CHROM	POSI	variant	bulk1_depth	bulk2_depth	p99	p95	bulk1_SNPindex	bulk2_SNPindex	delta_SNPindex
SL4.0ch01	529266	snp	21	23	0.501	0.3747	0.619	0.0	-0.619
SL4.0ch01	529383	snp	11	19	0.5837	0.4498	0.6364	0.0	-0.6364
SL4.0ch01	529433	indel	23	18	0.5169	0.3937	0.5652	0.0	-0.5652
SL4.0ch01	537264	indel	30	26	0.459	0.359	0.6	0.0769	-0.5231
SL4.0ch01	537343	snp	26	18	0.5085	0.3974	0.7308	0.0556	-0.6752
SL4.0ch01	539748	indel	12	8	0.6667	0.5	0.9167	0.0	-0.9167
SL4.0ch01	540768	snp	23	22	0.5079	0.3775	0.5652	0.0	-0.5652
SL4.0ch01	540929	snp	16	24	0.5208	0.3958	0.5625	0.0	-0.5625
SL4.0ch01	541365	indel	26	23	0.4983	0.3829	0.5769	0.0435	-0.5334
SL4.0ch01	543192	snp	18	21	0.5238	0.4048	0.6111	0.0476	-0.5635
SL4.0ch01	544504	snp	18	25	0.5133	0.3933	0.5556	0.04	-0.5156
SL4.0ch01	545103	snp	27	21	0.4868	0.381	0.5556	0.0476	-0.5079
SL4.0ch01	545631	snp	18	27	0.5	0.3889	0.5	0.0	-0.5
SL4.0ch01	546158	snp	28	23	0.4689	0.3587	0.5357	0.0435	-0.4922
SL4.0ch01	547953	snp	35	27	0.4688	0.3524	0.5714	0.0	-0.5714
SL4.0ch01	547990	snp	29	32	0.4461	0.3459	0.6207	0.0	-0.6207
SL4.0ch01	548414	snp	12	12	0.5833	0.5	0.75	0.0	-0.75
SL4.0ch01	550160	snp	24	24	0.5	0.375	0.625	0.0	-0.625
SL4.0ch01	551269	snp	36	20	0.4778	0.3722	0.5556	0.05	-0.5056
SL4.0ch01	553272	snp	22	32	0.4631	0.3636	0.5455	0.0625	-0.483
SL4.0ch01	555010	indel	26	29	0.4549	0.3515	0.5769	0.0	-0.5769
SL4.0ch01	555096	snp	27	24	0.4861	0.3704	0.5926	0.0	-0.5926
SL4.0ch01	555129	indel	23	23	0.4783	0.3913	0.5652	0.0	-0.5652
SL4.0ch01	555369	snp	16	20	0.525	0.4125	0.625	0.0	-0.625
SL4.0ch01	555693	snp	20	36	0.4778	0.3722	0.75	0.0556	-0.6944
SL4.0ch01	556447	snp	31	15	0.5097	0.3806	0.7419	0.0	-0.7419
SL4.0ch01	556867	snp	14	17	0.563	0.4328	0.7857	0.0	-0.7857
SL4.0ch01	558511	snp	28	22	0.4838	0.3799	0.6429	0.0	-0.6429
SL4.0ch01	559074	snp	19	24	0.5175	0.3816	0.6316	0.0	-0.6316
SL4.0ch01	559214	snp	15	29	0.5218	0.3908	0.6	0.0345	-0.5655
SL4.0ch01	559973	indel	25	36	0.4633	0.3589	0.68	0.0278	-0.6522
SL4.0ch01	560091	indel	25	21	0.5067	0.379	0.68	0.0	-0.68
SL4.0ch01	560450	snp	25	28	0.4743	0.3629	0.56	0.0357	-0.5243
SL4.0ch01	560521	snp	26	28	0.4698	0.3681	0.5385	0.0357	-0.5027
SL4.0ch01	560761	snp	24	18	0.5139	0.3889	0.7083	0.0556	-0.6528
SL4.0ch01	560779	snp	21	18	0.5238	0.4048	0.7619	0.0556	-0.7063
SL4.0ch01	560982	snp	9	22	0.5909	0.4596	0.7778	0.0455	-0.7323
SL4.0ch01	561356	snp	20	26	0.5038	0.3885	0.6	0.0769	-0.5231
SL4.0ch01	562659	indel	26	19	0.4919	0.3806	0.7308	0.0	-0.7308
SL4.0ch01	562897	snp	16	31	0.496	0.3952	0.75	0.0323	-0.7177
SL4.0ch01	562902	snp	14	33	0.513	0.4026	0.7857	0.0303	-0.7554
SL4.0ch01	562954	indel	28	22	0.4838	0.3799	0.7857	0.0455	-0.7403
SL4.0ch01	563088	snp	16	22	0.5227	0.4034	0.625	0.0455	-0.5795
SL4.0ch01	564582	snp	35	31	0.4488	0.3382	0.7429	0.0	-0.7429
SL4.0ch01	564755	snp	33	28	0.4578	0.3506	0.697	0.0	-0.697
SL4.0ch01	565464	snp	28	30	0.4476	0.3524	0.5	0.0	-0.5
SL4.0ch01	565548	snp	21	25	0.5067	0.379	0.7143	0.0	-0.7143
SL4.0ch01	565871	indel	31	25	0.4774	0.3652	0.7097	0.08	-0.6297
SL4.0ch01	565949	snp	33	34	0.434	0.3422	0.6364	0.0882	-0.5481
SL4.0ch01	566708	snp	26	48	0.4503	0.3478	0.5385	0.0208	-0.5176
SL4.0ch01	568065	indel	22	24	0.4886	0.3864	0.7727	0.0833	-0.6894
SL4.0ch01	568395	snp	16	24	0.5208	0.3958	0.6875	0.0417	-0.6458
SL4.0ch01	569218	snp	26	32	0.4736	0.3654	0.5769	0.0312	-0.5457
SL4.0ch01	569237	indel	26	33	0.4522	0.359	0.5769	0.0303	-0.5466
SL4.0ch01	570737	snp	16	17	0.5257	0.4375	0.6875	0.0	-0.6875
SL4.0ch01	570805	snp	18	16	0.5278	0.4167	0.6667	0.0	-0.6667
SL4.0ch01	572575	snp	24	19	0.5175	0.3816	0.5833	0.0	-0.5833
SL4.0ch01	572837	snp	22	14	0.526	0.4156	0.5455	0.0	-0.5455
SL4.0ch01	573421	snp	15	17	0.5569	0.4314	0.6	0.0	-0.6
SL4.0ch01	574019	snp	18	22	0.5051	0.404	0.6111	0.0455	-0.5657
SL4.0ch01	574294	snp	22	27	0.4882	0.3687	0.6364	0.0741	-0.5623
SL4.0ch01	575170	snp	26	21	0.4744	0.3681	0.5385	0.0	-0.5385
SL4.0ch01	575544	indel	12	24	0.5417	0.4167	0.5833	0.0	-0.5833
SL4.0ch01	576512	snp	22	20	0.4818	0.3864	0.5455	0.0	-0.5455
SL4.0ch01	577371	snp	27	10	0.5407	0.4296	0.5556	0.0	-0.5556
SL4.0ch01	578380	snp	20	20	0.5	0.4	0.65	0.0	-0.65
SL4.0ch01	579200	snp	31	25	0.4774	0.3652	0.5806	0.04	-0.5406
SL4.0ch01	581767	snp	25	14	0.5057	0.4029	0.64	0.0	-0.64
SL4.0ch01	582041	snp	21	19	0.5088	0.3935	0.5238	0.0	-0.5238
SL4.0ch01	583391	snp	30	24	0.4667	0.3667	0.5	0.0	-0.5
SL4.0ch01	583399	snp	31	22	0.4751	0.3724	0.4839	0.0	-0.4839
SL4.0ch01	583498	snp	27	22	0.4882	0.3687	0.5556	0.0	-0.5556
SL4.0ch01	584096	snp	22	17	0.5053	0.4011	0.5455	0.0	-0.5455
SL4.0ch01	585278	snp	18	24	0.5139	0.3889	0.6111	0.0833	-0.5278
SL4.0ch01	585709	snp	32	18	0.4896	0.3785	0.5	0.0	-0.5
SL4.0ch01	586477	snp	16	20	0.525	0.4125	0.6875	0.0	-0.6875
SL4.0ch01	586585	snp	24	22	0.4886	0.3864	0.5417	0.0	-0.5417
SL4.0ch01	589404	snp	13	15	0.5692	0.4359	0.6923	0.0	-0.6923
SL4.0ch01	593289	snp	27	36	0.4444	0.3426	0.5185	0.0278	-0.4907
SL4.0ch01	595872	snp	27	19	0.5146	0.3879	0.5185	0.0	-0.5185
SL4.0ch01	596540	indel	19	26	0.4919	0.3806	0.5789	0.0769	-0.502
SL4.0ch01	596547	snp	18	23	0.5169	0.3937	0.6111	0.0435	-0.5676
SL4.0ch01	599153	snp	15	20	0.5333	0.4167	0.6667	0.0	-0.6667
SL4.0ch01	599318	snp	17	25	0.5035	0.3882	0.5882	0.04	-0.5482
SL4.0ch01	599443	snp	9	19	0.5731	0.462	0.7778	0.0526	-0.7251
SL4.0ch01	601108	snp	17	23	0.5038	0.4015	0.6471	0.0435	-0.6036
SL4.0ch01	602889	snp	17	12	0.5637	0.4314	0.7059	0.0	-0.7059
SL4.0ch01	603460	snp	24	18	0.5139	0.3889	0.7917	0.0556	-0.7361
SL4.0ch01	608146	snp	24	18	0.5139	0.3889	0.7917	0.0	-0.7917
SL4.0ch01	610180	snp	23	17	0.5038	0.4015	0.5217	0.0	-0.5217
SL4.0ch01	611668	snp	10	22	0.5818	0.4364	0.7	0.0	-0.7
SL4.0ch01	615882	indel	16	16	0.5625	0.4375	0.625	0.0625	-0.5625
SL4.0ch01	617665	snp	19	16	0.5296	0.4243	0.6316	0.0	-0.6316
SL4.0ch01	618081	snp	17	19	0.5077	0.4025	0.5882	0.0	-0.5882
SL4.0ch01	618469	indel	21	17	0.5154	0.409	0.619	0.0588	-0.5602
SL4.0ch01	618790	snp	20	18	0.5222	0.4	0.85	0.0	-0.85
SL4.0ch01	621272	snp	20	24	0.5	0.3833	0.55	0.0	-0.55
SL4.0ch01	622414	snp	16	17	0.5257	0.4375	0.5625	0.0	-0.5625
SL4.0ch01	622505	snp	16	19	0.5296	0.4243	0.5625	0.0	-0.5625
SL4.0ch01	623193	snp	21	26	0.4744	0.3681	0.7143	0.0	-0.7143
SL4.0ch01	623527	snp	20	21	0.5119	0.3714	0.6	0.0	-0.6
SL4.0ch01	625322	snp	21	19	0.5088	0.3935	0.6667	0.0	-0.6667
SL4.0ch01	626289	snp	18	23	0.5169	0.3937	0.8333	0.0435	-0.7899
SL4.0ch01	626497	snp	27	18	0.5	0.3889	0.7037	0.0	-0.7037
SL4.0ch01	629870	snp	31	20	0.4984	0.3774	0.5484	0.0	-0.5484
SL4.0ch01	630167	snp	26	22	0.4825	0.3741	0.6154	0.0909	-0.5245
SL4.0ch01	631082	indel	14	13	0.5659	0.467	0.6429	0.0	-0.6429
SL4.0ch01	631505	snp	18	12	0.5833	0.4444	0.6667	0.0	-0.6667
SL4.0ch01	632053	snp	15	23	0.5188	0.4087	0.6	0.0	-0.6
SL4.0ch01	632173	snp	17	25	0.5035	0.3882	0.5882	0.0	-0.5882
SL4.0ch01	633187	indel	20	25	0.49	0.38	0.65	0.08	-0.57
SL4.0ch01	633801	snp	13	19	0.5304	0.4251	0.5385	0.0	-0.5385
SL4.0ch01	633943	snp	25	22	0.4927	0.3673	0.52	0.0	-0.52
SL4.0ch01	634567	snp	27	22	0.4882	0.3687	0.5926	0.0	-0.5926
SL4.0ch01	634595	indel	21	29	0.486	0.3777	0.5238	0.0	-0.5238
SL4.0ch01	635055	snp	16	16	0.5625	0.4375	0.625	0.0	-0.625
SL4.0ch01	635168	indel	15	14	0.5286	0.4429	0.5333	0.0	-0.5333
SL4.0ch01	635313	snp	25	25	0.48	0.36	0.52	0.0	-0.52
SL4.0ch01	636638	indel	14	18	0.5635	0.4365	0.5714	0.0	-0.5714
SL4.0ch01	637980	snp	23	30	0.4826	0.3725	0.5652	0.0	-0.5652
SL4.0ch01	638768	snp	17	15	0.5569	0.4314	0.7647	0.0	-0.7647
SL4.0ch01	639303	snp	13	22	0.542	0.4336	0.6154	0.0	-0.6154
SL4.0ch01	641201	snp	21	19	0.5088	0.3935	0.619	0.0526	-0.5664
SL4.0ch01	642126	snp	22	25	0.4927	0.3673	0.5909	0.0	-0.5909
SL4.0ch01	642640	indel	20	24	0.5	0.3833	0.5	0.0	-0.5
SL4.0ch01	647838	indel	13	21	0.5311	0.4176	0.6154	0.0	-0.6154
SL4.0ch01	648380	snp	20	24	0.5	0.3833	0.6	0.0417	-0.5583
SL4.0ch01	649830	snp	23	24	0.4891	0.3659	0.6087	0.0	-0.6087
SL4.0ch01	655543	indel	19	22	0.4952	0.3876	0.6316	0.0455	-0.5861
SL4.0ch01	656494	snp	22	19	0.4952	0.3876	0.7273	0.0	-0.7273
SL4.0ch01	658095	snp	17	16	0.5257	0.4375	0.7059	0.0625	-0.6434
SL4.0ch01	658255	snp	20	26	0.5038	0.3885	0.65	0.0	-0.65
SL4.0ch01	658352	snp	22	22	0.5	0.3636	0.6364	0.0	-0.6364
SL4.0ch01	659656	snp	21	23	0.501	0.3747	0.5714	0.0435	-0.528
SL4.0ch01	660220	snp	22	16	0.5227	0.4034	0.6364	0.0	-0.6364
SL4.0ch01	660238	indel	19	15	0.5368	0.4175	0.5789	0.0	-0.5789
SL4.0ch01	661039	indel	22	13	0.542	0.4336	0.7273	0.0	-0.7273
SL4.0ch01	661179	snp	15	14	0.5286	0.4429	0.7333	0.0	-0.7333
SL4.0ch01	663508	snp	24	26	0.4808	0.3654	0.7917	0.0385	-0.7532
SL4.0ch01	663791	snp	11	24	0.5606	0.4356	0.6364	0.0	-0.6364
SL4.0ch01	664616	indel	12	15	0.5833	0.45	0.6667	0.0	-0.6667
SL4.0ch01	666468	snp	16	32	0.5	0.375	0.5625	0.0	-0.5625
SL4.0ch01	666515	indel	14	28	0.5357	0.3929	0.5714	0.0	-0.5714
SL4.0ch01	666579	snp	21	33	0.4719	0.3636	0.4762	0.0	-0.4762
SL4.0ch01	667038	snp	17	25	0.5035	0.3882	0.5882	0.04	-0.5482
SL4.0ch01	667065	snp	16	24	0.5208	0.3958	0.5625	0.0417	-0.5208
SL4.0ch01	669795	snp	21	19	0.5088	0.3935	0.6667	0.0526	-0.614
SL4.0ch01	671493	snp	30	28	0.4476	0.3524	0.4667	0.0	-0.4667
SL4.0ch01	675799	snp	21	19	0.5088	0.3935	0.619	0.1053	-0.5138
SL4.0ch01	677689	snp	18	18	0.5	0.3889	0.6111	0.1111	-0.5
SL4.0ch01	679035	snp	25	18	0.5133	0.3933	0.72	0.1111	-0.6089
SL4.0ch01	679832	snp	22	26	0.4825	0.3741	0.5909	0.0	-0.5909
SL4.0ch01	683929	snp	20	18	0.5222	0.4	0.65	0.0556	-0.5944
SL4.0ch01	685350	snp	21	16	0.5268	0.4018	0.619	0.0	-0.619
SL4.0ch01	685948	indel	23	32	0.4647	0.3587	0.6087	0.0	-0.6087
SL4.0ch01	686115	snp	21	28	0.4881	0.381	0.5238	0.0	-0.5238
SL4.0ch01	689003	snp	15	20	0.5333	0.4167	0.6	0.05	-0.55
SL4.0ch01	690926	snp	16	23	0.4891	0.3832	0.5625	0.0	-0.5625
SL4.0ch01	692548	snp	19	24	0.5175	0.3816	0.5263	0.0	-0.5263
SL4.0ch01	697589	snp	19	23	0.4943	0.389	0.6316	0.0435	-0.5881
SL4.0ch01	699753	indel	22	27	0.4882	0.3687	0.7273	0.037	-0.6902
SL4.0ch01	699844	snp	22	32	0.4631	0.3636	0.5909	0.0312	-0.5597
SL4.0ch01	708205	snp	33	23	0.4704	0.3623	0.4848	0.0	-0.4848
SL4.0ch01	709637	snp	29	17	0.503	0.3955	0.5172	0.0	-0.5172
SL4.0ch01	709938	snp	23	20	0.4957	0.3891	0.6087	0.05	-0.5587
SL4.0ch01	712159	snp	30	26	0.459	0.359	0.5667	0.0	-0.5667
SL4.0ch01	715473	snp	34	28	0.4559	0.355	0.4706	0.0	-0.4706
SL4.0ch01	715510	indel	41	23	0.4655	0.3542	0.5122	0.0	-0.5122
SL4.0ch01	715564	snp	40	30	0.4583	0.35	0.575	0.0	-0.575
SL4.0ch01	720635	snp	21	33	0.4719	0.3636	0.5238	0.0303	-0.4935
SL4.0ch01	720880	snp	20	29	0.4897	0.3741	0.8	0.0	-0.8
SL4.0ch01	721887	snp	20	24	0.5	0.3833	0.65	0.0	-0.65
SL4.0ch01	722253	indel	20	28	0.4857	0.3714	0.6	0.0	-0.6
SL4.0ch01	722280	snp	19	27	0.5146	0.3879	0.5263	0.0	-0.5263
SL4.0ch01	726568	snp	9	15	0.6222	0.4667	0.7778	0.1333	-0.6444
SL4.0ch01	733561	indel	24	16	0.5208	0.3958	0.5833	0.0	-0.5833
SL4.0ch01	734301	indel	29	35	0.4443	0.3527	0.5862	0.0571	-0.5291
SL4.0ch01	738312	indel	17	21	0.5154	0.409	0.8235	0.0476	-0.7759
SL4.0ch01	738452	indel	25	26	0.4877	0.3708	0.6	0.0385	-0.5615
SL4.0ch01	739533	snp	28	21	0.4881	0.381	0.5	0.0	-0.5
SL4.0ch01	742252	indel	21	22	0.4957	0.3939	0.619	0.0455	-0.5736
SL4.0ch01	745932	snp	31	21	0.4716	0.361	0.5484	0.0	-0.5484
SL4.0ch01	746179	snp	21	24	0.5	0.381	0.5714	0.0417	-0.5298
SL4.0ch01	746615	indel	31	16	0.496	0.3952	0.5806	0.0625	-0.5181
SL4.0ch01	746648	snp	25	14	0.5057	0.4029	0.56	0.0	-0.56
SL4.0ch01	746788	snp	19	16	0.5296	0.4243	0.5789	0.0	-0.5789
SL4.0ch01	752611	indel	25	18	0.5133	0.3933	0.56	0.0	-0.56
SL4.0ch01	754573	indel	8	11	0.6591	0.5114	0.75	0.0	-0.75
SL4.0ch01	755201	snp	25	33	0.4582	0.3576	0.64	0.0606	-0.5794
SL4.0ch01	756833	snp	17	18	0.5392	0.4216	0.7059	0.0556	-0.6503
SL4.0ch01	758894	indel	27	24	0.4861	0.3704	0.5926	0.0	-0.5926
SL4.0ch01	759255	snp	21	20	0.5119	0.3714	0.7143	0.0	-0.7143
SL4.0ch01	761085	snp	26	23	0.4983	0.3829	0.6923	0.087	-0.6054
SL4.0ch01	767805	snp	29	23	0.4978	0.3763	0.5172	0.0	-0.5172
SL4.0ch01	768923	snp	16	18	0.5278	0.4167	0.6875	0.1111	-0.5764
SL4.0ch01	769478	snp	15	24	0.5083	0.4	0.6	0.0833	-0.5167
SL4.0ch01	769985	indel	31	21	0.4716	0.361	0.5484	0.0476	-0.5008
SL4.0ch01	774323	snp	23	23	0.4783	0.3913	0.5217	0.0	-0.5217
SL4.0ch01	775806	snp	24	22	0.4886	0.3864	0.5833	0.0455	-0.5379
SL4.0ch01	776660	snp	26	25	0.4877	0.3708	0.5769	0.0	-0.5769
SL4.0ch01	779914	snp	28	26	0.4698	0.3681	0.5714	0.0385	-0.533
SL4.0ch01	782302	snp	26	19	0.4919	0.3806	0.5769	0.0	-0.5769
SL4.0ch01	782599	snp	19	26	0.4919	0.3806	0.6842	0.0769	-0.6073
SL4.0ch01	783177	indel	21	30	0.4762	0.381	0.5714	0.0333	-0.5381
SL4.0ch01	785718	snp	13	20	0.5423	0.4192	0.6923	0.05	-0.6423
SL4.0ch01	786428	indel	20	19	0.5342	0.3868	0.55	0.0	-0.55
SL4.0ch01	786604	snp	23	22	0.5079	0.3775	0.6087	0.0455	-0.5632
SL4.0ch01	789178	snp	26	30	0.459	0.359	0.5769	0.1	-0.4769
SL4.0ch01	789368	snp	29	27	0.4649	0.3589	0.5517	0.037	-0.5147
SL4.0ch01	792170	snp	19	19	0.5263	0.4211	0.7368	0.0	-0.7368
SL4.0ch01	793779	indel	22	19	0.4952	0.3876	0.6818	0.0526	-0.6292
SL4.0ch01	800017	snp	19	26	0.4919	0.3806	0.5789	0.0769	-0.502
SL4.0ch01	800098	indel	26	31	0.4665	0.3635	0.5385	0.0323	-0.5062
SL4.0ch01	801491	snp	26	18	0.5085	0.3974	0.6154	0.0556	-0.5598
SL4.0ch01	807026	snp	15	22	0.5273	0.397	0.6	0.0455	-0.5545
SL4.0ch01	809249	snp	24	19	0.5175	0.3816	0.5417	0.0	-0.5417
SL4.0ch01	813953	indel	26	22	0.4825	0.3741	0.5769	0.0909	-0.486
SL4.0ch01	816315	snp	19	28	0.4887	0.3797	0.5263	0.0	-0.5263
SL4.0ch01	816782	snp	16	15	0.5458	0.4208	0.5625	0.0	-0.5625
SL4.0ch01	818901	snp	17	15	0.5569	0.4314	0.7647	0.1333	-0.6314
SL4.0ch01	825335	snp	25	23	0.4957	0.3722	0.64	0.1304	-0.5096
SL4.0ch01	827819	indel	23	30	0.4826	0.3725	0.5217	0.0	-0.5217
SL4.0ch01	829745	indel	20	29	0.4897	0.3741	0.65	0.0	-0.65
SL4.0ch01	830217	snp	22	21	0.4957	0.3939	0.5455	0.0476	-0.4978
SL4.0ch01	833805	indel	36	20	0.4778	0.3722	0.6944	0.05	-0.6444
SL4.0ch01	838975	snp	32	16	0.5	0.375	0.5625	0.0625	-0.5
SL4.0ch01	839753	snp	18	16	0.5278	0.4167	0.6667	0.0625	-0.6042
SL4.0ch01	844682	snp	28	30	0.4476	0.3524	0.5357	0.0333	-0.5024
SL4.0ch01	844795	snp	20	26	0.5038	0.3885	0.65	0.0385	-0.6115
SL4.0ch01	845100	snp	27	23	0.4863	0.3688	0.5926	0.087	-0.5056
SL4.0ch01	845976	snp	17	29	0.503	0.3955	0.5882	0.069	-0.5193
SL4.0ch01	846852	snp	21	19	0.5088	0.3935	0.619	0.0	-0.619
SL4.0ch01	854180	snp	24	17	0.5074	0.3971	0.6667	0.1176	-0.549
SL4.0ch01	855498	indel	20	32	0.4812	0.3812	0.6	0.0312	-0.5687
SL4.0ch01	856281	snp	20	26	0.5038	0.3885	0.6	0.0385	-0.5615
SL4.0ch01	856307	indel	21	24	0.5	0.381	0.6667	0.0833	-0.5833
SL4.0ch01	857313	snp	24	20	0.5	0.3833	0.5	0.0	-0.5
SL4.0ch01	857409	snp	24	22	0.4886	0.3864	0.5417	0.0	-0.5417
SL4.0ch01	858586	snp	13	12	0.6026	0.4487	0.6154	0.0	-0.6154
SL4.0ch01	861298	snp	20	16	0.525	0.4125	0.7	0.0625	-0.6375
SL4.0ch01	862444	snp	13	15	0.5692	0.4359	0.6923	0.0	-0.6923
SL4.0ch01	863238	snp	21	23	0.501	0.3747	0.619	0.0435	-0.5756
SL4.0ch01	864619	snp	22	22	0.5	0.3636	0.7273	0.0455	-0.6818
SL4.0ch01	865856	snp	22	17	0.5053	0.4011	0.6364	0.0	-0.6364
SL4.0ch01	867307	snp	23	20	0.4957	0.3891	0.6087	0.0	-0.6087
SL4.0ch01	867915	snp	18	20	0.5222	0.4	0.5556	0.0	-0.5556
SL4.0ch01	870336	snp	23	25	0.4957	0.3722	0.5652	0.04	-0.5252
SL4.0ch01	873185	snp	16	36	0.5069	0.3958	0.625	0.0278	-0.5972
SL4.0ch01	877159	snp	12	21	0.5714	0.4286	0.75	0.0	-0.75
SL4.0ch01	877470	snp	19	30	0.4947	0.3789	0.6842	0.0	-0.6842
SL4.0ch01	877699	indel	14	23	0.5248	0.4099	0.6429	0.0	-0.6429
SL4.0ch01	877767	snp	12	19	0.5482	0.4342	0.6667	0.0	-0.6667
SL4.0ch01	877781	indel	14	19	0.5414	0.4173	0.6429	0.0	-0.6429
SL4.0ch01	877878	snp	14	15	0.5286	0.4429	0.5714	0.0	-0.5714
SL4.0ch01	885151	snp	21	19	0.5088	0.3935	0.5714	0.0	-0.5714
SL4.0ch01	885182	indel	18	24	0.5139	0.3889	0.6111	0.0	-0.6111
SL4.0ch01	887633	snp	19	13	0.5304	0.4251	0.5789	0.0	-0.5789
SL4.0ch01	890628	indel	20	21	0.5119	0.3714	0.55	0.0	-0.55
SL4.0ch01	896762	snp	29	23	0.4978	0.3763	0.5862	0.0435	-0.5427
SL4.0ch01	902688	snp	27	22	0.4882	0.3687	0.5926	0.0909	-0.5017
SL4.0ch01	902823	snp	33	22	0.4697	0.3485	0.5455	0.0455	-0.5
SL4.0ch01	904863	snp	27	27	0.4815	0.3704	0.6667	0.1111	-0.5556
SL4.0ch01	906093	snp	16	31	0.496	0.3952	0.5	0.0	-0.5
SL4.0ch01	907415	snp	17	22	0.5053	0.4011	0.5882	0.0	-0.5882
SL4.0ch01	907836	indel	11	19	0.5837	0.4498	0.7273	0.0526	-0.6746
SL4.0ch01	910938	snp	26	23	0.4983	0.3829	0.5385	0.0	-0.5385
SL4.0ch01	911441	snp	21	18	0.5238	0.4048	0.5238	0.0	-0.5238
SL4.0ch01	911910	indel	18	24	0.5139	0.3889	0.6667	0.125	-0.5417
SL4.0ch01	912173	snp	23	16	0.4891	0.3832	0.6522	0.125	-0.5272
SL4.0ch01	912394	snp	26	22	0.4825	0.3741	0.5385	0.0455	-0.493
SL4.0ch01	912470	indel	25	18	0.5133	0.3933	0.68	0.0556	-0.6244
SL4.0ch01	916975	snp	20	28	0.4857	0.3714	0.7	0.0714	-0.6286
SL4.0ch01	919475	snp	19	20	0.5342	0.3868	0.7368	0.05	-0.6868
SL4.0ch01	922281	indel	14	23	0.5248	0.4099	0.6429	0.0435	-0.5994
SL4.0ch01	923540	indel	24	22	0.4886	0.3864	0.5833	0.0909	-0.4924
SL4.0ch01	926975	snp	26	14	0.522	0.4066	0.5769	0.0	-0.5769
SL4.0ch01	928271	snp	15	16	0.5458	0.4208	0.6667	0.0625	-0.6042
SL4.0ch01	929346	indel	17	22	0.5053	0.4011	0.7059	0.0	-0.7059
SL4.0ch01	934340	snp	17	17	0.5294	0.4118	0.5294	0.0	-0.5294
SL4.0ch01	939174	snp	14	17	0.563	0.4328	0.7143	0.0588	-0.6555
SL4.0ch01	941904	snp	25	25	0.48	0.36	0.56	0.08	-0.48
SL4.0ch01	942846	indel	17	22	0.5053	0.4011	0.5882	0.0455	-0.5428
SL4.0ch01	943206	snp	26	29	0.4549	0.3515	0.6154	0.0345	-0.5809
SL4.0ch01	943236	indel	28	24	0.4762	0.375	0.6071	0.0417	-0.5655
SL4.0ch01	943999	snp	26	31	0.4665	0.3635	0.5	0.0	-0.5
SL4.0ch01	944853	snp	28	23	0.4689	0.3587	0.5357	0.0	-0.5357
SL4.0ch01	945457	indel	14	15	0.5286	0.4429	0.5714	0.0	-0.5714
SL4.0ch01	946234	indel	22	34	0.4786	0.361	0.5909	0.0882	-0.5027
SL4.0ch01	950130	snp	20	19	0.5342	0.3868	0.7	0.0526	-0.6474
SL4.0ch01	955035	snp	21	29	0.486	0.3777	0.6667	0.0	-0.6667
SL4.0ch01	955276	snp	18	34	0.4837	0.3791	0.5556	0.0294	-0.5261
SL4.0ch01	955836	indel	22	21	0.4957	0.3939	0.5909	0.0476	-0.5433
SL4.0ch01	962588	snp	14	28	0.5357	0.3929	0.6429	0.0	-0.6429
SL4.0ch01	962793	snp	22	31	0.4751	0.3724	0.5909	0.0323	-0.5587
SL4.0ch01	963075	snp	26	21	0.4744	0.3681	0.5769	0.0476	-0.5293
SL4.0ch01	963747	snp	22	20	0.4818	0.3864	0.5	0.0	-0.5
SL4.0ch01	963832	snp	28	28	0.4643	0.3571	0.5357	0.0357	-0.5
SL4.0ch01	964033	snp	31	24	0.4731	0.3589	0.5806	0.0	-0.5806
SL4.0ch01	966007	snp	25	25	0.48	0.36	0.72	0.0	-0.72
SL4.0ch01	966978	snp	26	29	0.4549	0.3515	0.4615	0.0	-0.4615
SL4.0ch01	968829	indel	10	16	0.5875	0.4625	0.7	0.0	-0.7
SL4.0ch01	968839	snp	10	15	0.6	0.4667	0.7	0.0	-0.7
SL4.0ch01	970792	snp	20	16	0.525	0.4125	0.65	0.0625	-0.5875
SL4.0ch01	972831	snp	26	20	0.5038	0.3885	0.5385	0.0	-0.5385
SL4.0ch01	973855	snp	19	20	0.5342	0.3868	0.6316	0.05	-0.5816
SL4.0ch01	976993	snp	22	18	0.5051	0.404	0.5909	0.0556	-0.5354
SL4.0ch01	977246	indel	22	23	0.5079	0.3775	0.5455	0.0	-0.5455
SL4.0ch01	977252	snp	20	20	0.5	0.4	0.55	0.0	-0.55
SL4.0ch01	979304	snp	20	26	0.5038	0.3885	0.7	0.0385	-0.6615
SL4.0ch01	979355	indel	24	20	0.5	0.3833	0.6667	0.05	-0.6167
SL4.0ch01	979520	snp	25	24	0.4733	0.3817	0.52	0.0417	-0.4783
SL4.0ch01	980117	snp	22	23	0.5079	0.3775	0.6818	0.087	-0.5949
SL4.0ch01	981319	snp	20	17	0.5235	0.4059	0.65	0.0	-0.65
SL4.0ch01	981501	indel	25	19	0.5095	0.3895	0.56	0.0	-0.56
SL4.0ch01	981512	snp	24	18	0.5139	0.3889	0.625	0.0	-0.625
SL4.0ch01	981935	indel	25	26	0.4877	0.3708	0.72	0.1154	-0.6046
SL4.0ch01	981995	snp	18	17	0.5392	0.4216	0.7222	0.1176	-0.6046
SL4.0ch01	982320	indel	23	25	0.4957	0.3722	0.6087	0.08	-0.5287
SL4.0ch01	985883	snp	22	17	0.5053	0.4011	0.5909	0.0	-0.5909
SL4.0ch01	986810	snp	21	22	0.4957	0.3939	0.5714	0.0455	-0.526
SL4.0ch01	989213	snp	14	23	0.5248	0.4099	0.6429	0.087	-0.5559
SL4.0ch01	990503	snp	22	14	0.526	0.4156	0.5455	0.0	-0.5455
SL4.0ch01	992843	indel	22	21	0.4957	0.3939	0.5455	0.0476	-0.4978
SL4.0ch01	1001758	indel	16	26	0.5048	0.3942	0.6875	0.0385	-0.649
SL4.0ch01	1001863	snp	22	22	0.5	0.3636	0.6818	0.0909	-0.5909
SL4.0ch01	1003153	snp	17	22	0.5053	0.4011	0.5882	0.0455	-0.5428
SL4.0ch01	1003341	snp	20	24	0.5	0.3833	0.65	0.125	-0.525
SL4.0ch01	1004779	snp	26	30	0.459	0.359	0.5	0.0333	-0.4667
SL4.0ch01	1005468	snp	11	23	0.5573	0.4269	0.6364	0.0435	-0.5929
SL4.0ch01	1009730	indel	20	20	0.5	0.4	0.55	0.0	-0.55
SL4.0ch01	1010959	indel	29	16	0.5151	0.3901	0.5517	0.0	-0.5517
SL4.0ch01	1011916	snp	26	17	0.4977	0.3801	0.5769	0.0588	-0.5181
SL4.0ch01	1012366	snp	12	21	0.5714	0.4286	0.75	0.0476	-0.7024
SL4.0ch01	1013180	snp	18	24	0.5139	0.3889	0.7222	0.0417	-0.6806
SL4.0ch01	1018769	snp	14	14	0.5714	0.4286	0.5714	0.0	-0.5714
SL4.0ch01	1020364	snp	27	17	0.512	0.3943	0.7037	0.0588	-0.6449
SL4.0ch01	1025683	indel	15	31	0.5097	0.3806	0.6	0.0	-0.6
SL4.0ch01	1026755	snp	21	21	0.4762	0.381	0.5238	0.0	-0.5238
SL4.0ch01	1029985	indel	15	16	0.5458	0.4208	0.7333	0.125	-0.6083
SL4.0ch01	1039824	snp	19	21	0.5088	0.3935	0.6842	0.0476	-0.6366
SL4.0ch01	1044842	snp	19	26	0.4919	0.3806	0.5263	0.0	-0.5263
SL4.0ch01	1046308	indel	10	12	0.6167	0.4667	0.8	0.0	-0.8
SL4.0ch01	1048020	snp	16	26	0.5048	0.3942	0.6875	0.0769	-0.6106
SL4.0ch01	1048180	snp	17	31	0.4858	0.3833	0.5294	0.0323	-0.4972
SL4.0ch01	1051472	snp	21	29	0.486	0.3777	0.619	0.0345	-0.5846
SL4.0ch01	1053094	snp	16	21	0.5268	0.4018	0.6875	0.1429	-0.5446
SL4.0ch01	1053515	snp	29	19	0.4791	0.3775	0.5517	0.0526	-0.4991
SL4.0ch01	1067380	indel	15	19	0.5368	0.4175	0.6667	0.0526	-0.614
SL4.0ch01	1067397	snp	13	17	0.5747	0.4389	0.6923	0.0588	-0.6335
SL4.0ch01	1067863	snp	16	16	0.5625	0.4375	0.5625	0.0	-0.5625
SL4.0ch01	1071356	snp	22	24	0.4886	0.3864	0.6818	0.0833	-0.5985
SL4.0ch01	1071635	snp	22	24	0.4886	0.3864	0.6818	0.125	-0.5568
SL4.0ch01	1074741	snp	26	22	0.4825	0.3741	0.5385	0.0455	-0.493
SL4.0ch01	1078482	snp	12	16	0.5833	0.4375	0.6667	0.0	-0.6667
SL4.0ch01	1078492	indel	13	15	0.5692	0.4359	0.6923	0.0	-0.6923
SL4.0ch01	1078720	snp	14	29	0.5123	0.4039	0.7857	0.0345	-0.7512
SL4.0ch01	1079243	snp	15	30	0.5	0.4	0.6	0.0667	-0.5333
SL4.0ch01	1079460	indel	23	35	0.4671	0.354	0.5652	0.0857	-0.4795
SL4.0ch01	1079745	indel	21	30	0.4762	0.381	0.5714	0.0667	-0.5048
SL4.0ch01	1080059	indel	27	26	0.4729	0.3604	0.5556	0.0	-0.5556
SL4.0ch01	1080082	snp	31	27	0.4683	0.362	0.5484	0.0	-0.5484
SL4.0ch01	1080300	snp	23	20	0.4957	0.3891	0.5652	0.0	-0.5652
SL4.0ch01	1080803	snp	16	24	0.5208	0.3958	0.625	0.0833	-0.5417
SL4.0ch01	1082588	indel	18	30	0.5	0.3889	0.5556	0.0333	-0.5222
SL4.0ch01	1091583	snp	20	23	0.4957	0.3891	0.5	0.0	-0.5
SL4.0ch01	1092714	snp	12	19	0.5482	0.4342	0.6667	0.0	-0.6667
SL4.0ch01	1094832	snp	17	16	0.5257	0.4375	0.5294	0.0	-0.5294
SL4.0ch01	1095295	snp	24	30	0.4667	0.3667	0.5833	0.1	-0.4833
SL4.0ch01	1095450	indel	25	21	0.5067	0.379	0.6	0.0476	-0.5524
SL4.0ch01	1095508	snp	27	24	0.4861	0.3704	0.6667	0.125	-0.5417
SL4.0ch01	1095581	snp	23	25	0.4957	0.3722	0.6522	0.04	-0.6122
SL4.0ch01	1098390	snp	13	14	0.5659	0.467	0.6923	0.0714	-0.6209
SL4.0ch01	1098523	snp	9	8	0.6528	0.5278	0.7778	0.0	-0.7778
SL4.0ch01	1099443	indel	21	27	0.4868	0.381	0.5714	0.0741	-0.4974
SL4.0ch01	1099622	snp	21	26	0.4744	0.3681	0.5714	0.0769	-0.4945
SL4.0ch01	1100057	indel	13	23	0.5518	0.4214	0.6154	0.0	-0.6154
SL4.0ch01	1101182	indel	40	22	0.4659	0.3682	0.55	0.0455	-0.5045
SL4.0ch01	1102552	snp	20	22	0.4818	0.3864	0.6	0.0909	-0.5091
SL4.0ch01	1105346	snp	12	18	0.5833	0.4444	0.75	0.1111	-0.6389
SL4.0ch01	1105501	indel	14	12	0.5952	0.4643	0.7857	0.0833	-0.7024
SL4.0ch01	1105502	snp	13	12	0.6026	0.4487	0.7692	0.0833	-0.6859
SL4.0ch01	1105514	snp	15	13	0.5692	0.4359	0.8	0.0769	-0.7231
SL4.0ch01	1106006	snp	15	25	0.52	0.4	0.6	0.08	-0.52
SL4.0ch01	1106862	snp	20	19	0.5342	0.3868	0.7	0.1053	-0.5947
SL4.0ch01	1107383	snp	22	25	0.4927	0.3673	0.6364	0.08	-0.5564
SL4.0ch01	1113392	snp	14	17	0.563	0.4328	0.6429	0.0588	-0.584
SL4.0ch01	1115293	snp	15	19	0.5368	0.4175	0.7333	0.0526	-0.6807
SL4.0ch01	1115434	indel	15	29	0.5218	0.3908	0.6	0.0345	-0.5655
SL4.0ch01	1115585	snp	11	20	0.5682	0.4273	0.6364	0.05	-0.5864
SL4.0ch01	1122164	snp	13	20	0.5423	0.4192	0.6923	0.05	-0.6423
SL4.0ch01	1126233	snp	20	20	0.5	0.4	0.7	0.2	-0.5
SL4.0ch01	1126419	indel	20	20	0.5	0.4	0.75	0.2	-0.55
SL4.0ch01	1127289	indel	23	21	0.501	0.3747	0.6087	0.0952	-0.5135
SL4.0ch01	1127952	snp	22	24	0.4886	0.3864	0.6364	0.0417	-0.5947
SL4.0ch01	1134528	snp	22	32	0.4631	0.3636	0.5909	0.0312	-0.5597
SL4.0ch01	1137477	indel	29	28	0.4421	0.367	0.5517	0.1071	-0.4446
SL4.0ch01	1137595	indel	24	27	0.4861	0.3704	0.625	0.037	-0.588
SL4.0ch01	1137603	snp	23	26	0.4983	0.3829	0.6522	0.0769	-0.5753
SL4.0ch01	1139326	snp	20	17	0.5235	0.4059	0.75	0.1765	-0.5735
SL4.0ch01	1149789	snp	23	32	0.4647	0.3587	0.6522	0.0312	-0.6209
SL4.0ch01	1150428	snp	18	18	0.5	0.3889	0.7222	0.0	-0.7222
SL4.0ch01	1151906	snp	29	24	0.4684	0.3635	0.7241	0.0417	-0.6825
SL4.0ch01	1154553	snp	22	22	0.5	0.3636	0.5909	0.0455	-0.5455
SL4.0ch01	1159521	snp	19	25	0.5095	0.3895	0.6316	0.04	-0.5916
SL4.0ch01	1159560	indel	25	29	0.4621	0.3641	0.56	0.0	-0.56
SL4.0ch01	1160179	snp	27	28	0.4563	0.3757	0.6296	0.1071	-0.5225
SL4.0ch01	1163489	snp	16	24	0.5208	0.3958	0.6875	0.125	-0.5625
SL4.0ch01	1165816	indel	18	26	0.5085	0.3974	0.5556	0.0	-0.5556
SL4.0ch01	1166139	snp	25	33	0.4582	0.3576	0.64	0.0909	-0.5491
SL4.0ch01	1166396	snp	14	26	0.522	0.4066	0.6429	0.0769	-0.5659
SL4.0ch01	1166539	indel	16	20	0.525	0.4125	0.75	0.1	-0.65
SL4.0ch01	1172169	snp	9	22	0.5909	0.4596	0.6667	0.0455	-0.6212
SL4.0ch01	1183825	snp	24	22	0.4886	0.3864	0.5	0.0	-0.5
SL4.0ch01	1183929	snp	27	35	0.4688	0.3524	0.5556	0.0	-0.5556
SL4.0ch01	1184381	snp	23	15	0.5188	0.4087	0.6522	0.1333	-0.5188
SL4.0ch01	1185081	snp	22	21	0.4957	0.3939	0.6364	0.0952	-0.5411
SL4.0ch01	1192849	snp	17	24	0.5074	0.3971	0.5882	0.0417	-0.5466
SL4.0ch01	1193443	snp	33	21	0.4719	0.3636	0.7576	0.0952	-0.6623
SL4.0ch01	1218223	snp	17	20	0.5235	0.4059	0.6471	0.05	-0.5971
SL4.0ch01	1221348	snp	21	29	0.486	0.3777	0.5238	0.0	-0.5238
SL4.0ch01	1225932	snp	13	20	0.5423	0.4192	0.7692	0.05	-0.7192
SL4.0ch01	1225972	snp	10	19	0.5842	0.4421	0.7	0.0526	-0.6474
SL4.0ch01	1230615	snp	9	15	0.6222	0.4667	0.6667	0.0	-0.6667
SL4.0ch01	1231941	snp	11	20	0.5682	0.4273	0.6364	0.0	-0.6364
SL4.0ch01	1233484	snp	18	27	0.5	0.3889	0.5556	0.037	-0.5185
SL4.0ch01	1241990	snp	20	34	0.4853	0.3765	0.75	0.0882	-0.6618
SL4.0ch01	1242172	snp	22	33	0.4697	0.3485	0.5455	0.0606	-0.4848
SL4.0ch01	1246770	snp	24	31	0.4731	0.3589	0.5417	0.0645	-0.4772
SL4.0ch01	1252580	snp	23	15	0.5188	0.4087	0.6957	0.1333	-0.5623
SL4.0ch01	1252715	snp	24	29	0.4684	0.3635	0.5417	0.069	-0.4727
SL4.0ch01	1254170	indel	15	13	0.5692	0.4359	0.7333	0.0769	-0.6564
SL4.0ch01	1254242	indel	14	13	0.5659	0.467	0.5714	0.0	-0.5714
SL4.0ch01	1254624	indel	17	26	0.4977	0.3801	0.5882	0.0769	-0.5113
SL4.0ch01	1257342	snp	27	32	0.4711	0.3542	0.6296	0.0938	-0.5359
SL4.0ch01	1257623	snp	21	21	0.4762	0.381	0.5714	0.0476	-0.5238
SL4.0ch01	1261829	snp	24	19	0.5175	0.3816	0.625	0.0	-0.625
SL4.0ch01	1267133	snp	18	21	0.5238	0.4048	0.6667	0.0952	-0.5714
SL4.0ch01	1269174	snp	17	20	0.5235	0.4059	0.7059	0.15	-0.5559
SL4.0ch01	1269175	snp	18	20	0.5222	0.4	0.7222	0.15	-0.5722
SL4.0ch01	1271594	snp	23	27	0.4863	0.3688	0.5217	0.0	-0.5217
SL4.0ch01	1275617	snp	20	25	0.49	0.38	0.55	0.04	-0.51
SL4.0ch01	1279465	snp	16	22	0.5227	0.4034	0.6875	0.0909	-0.5966
SL4.0ch01	1285969	snp	16	17	0.5257	0.4375	0.625	0.0588	-0.5662
SL4.0ch01	1287794	indel	19	25	0.5095	0.3895	0.6842	0.04	-0.6442
SL4.0ch01	1292923	snp	23	28	0.4689	0.3587	0.5217	0.0357	-0.486
SL4.0ch01	1297381	indel	18	15	0.5556	0.4222	0.6111	0.0	-0.6111
SL4.0ch01	1298031	snp	13	22	0.542	0.4336	0.6923	0.0	-0.6923
SL4.0ch01	1300613	snp	19	29	0.4791	0.3775	0.6316	0.1034	-0.5281
SL4.0ch01	1302755	snp	19	24	0.5175	0.3816	0.6316	0.0417	-0.5899
SL4.0ch01	1302896	snp	18	28	0.4921	0.381	0.5556	0.0357	-0.5198
SL4.0ch01	1306280	snp	21	34	0.4608	0.3683	0.6667	0.1176	-0.549
SL4.0ch01	1307717	snp	17	16	0.5257	0.4375	0.5294	0.0	-0.5294
SL4.0ch01	1315897	indel	13	20	0.5423	0.4192	0.6923	0.05	-0.6423
SL4.0ch01	1316450	snp	18	22	0.5051	0.404	0.6667	0.1364	-0.5303
SL4.0ch01	1316724	snp	19	16	0.5296	0.4243	0.6842	0.0625	-0.6217
SL4.0ch01	1316956	indel	17	19	0.5077	0.4025	0.5294	0.0	-0.5294
SL4.0ch01	1320041	snp	17	25	0.5035	0.3882	0.6471	0.0	-0.6471
SL4.0ch01	1320329	snp	24	20	0.5	0.3833	0.625	0.05	-0.575
SL4.0ch01	1324638	snp	17	17	0.5294	0.4118	0.7647	0.0	-0.7647
SL4.0ch01	1324658	indel	18	15	0.5556	0.4222	0.7222	0.0	-0.7222
SL4.0ch01	1329802	indel	25	25	0.48	0.36	0.52	0.04	-0.48
SL4.0ch01	1331551	snp	10	25	0.54	0.42	0.6	0.04	-0.56
SL4.0ch01	1331877	snp	23	24	0.4891	0.3659	0.6087	0.0417	-0.567
SL4.0ch01	1338890	snp	20	18	0.5222	0.4	0.65	0.1111	-0.5389
SL4.0ch01	1340816	snp	16	20	0.525	0.4125	0.6875	0.1	-0.5875
SL4.0ch01	1342322	indel	19	13	0.5304	0.4251	0.6842	0.0769	-0.6073
SL4.0ch01	1344028	indel	17	25	0.5035	0.3882	0.7059	0.2	-0.5059
SL4.0ch01	1344178	snp	25	28	0.4743	0.3629	0.6	0.1071	-0.4929
SL4.0ch01	1349730	indel	23	13	0.5518	0.4214	0.6957	0.0	-0.6957
SL4.0ch01	1353761	indel	25	15	0.52	0.4	0.64	0.0667	-0.5733
SL4.0ch01	1357731	snp	10	13	0.6154	0.4692	0.7	0.0	-0.7
SL4.0ch01	1359139	snp	26	27	0.4729	0.3604	0.5385	0.0	-0.5385
SL4.0ch01	1360109	snp	20	12	0.55	0.4167	0.6	0.0	-0.6
SL4.0ch01	1368271	snp	24	21	0.5	0.381	0.5	0.0	-0.5
SL4.0ch01	1373400	snp	21	20	0.5119	0.3714	0.619	0.0	-0.619
SL4.0ch01	1373421	indel	24	17	0.5074	0.3971	0.625	0.0	-0.625
SL4.0ch01	1374747	snp	15	18	0.5556	0.4222	0.8	0.1111	-0.6889
SL4.0ch01	1381575	snp	25	22	0.4927	0.3673	0.56	0.0455	-0.5145
SL4.0ch01	1387454	snp	28	29	0.4421	0.367	0.6071	0.069	-0.5382
SL4.0ch01	1390940	indel	26	16	0.5048	0.3942	0.6923	0.0625	-0.6298
SL4.0ch01	1393633	snp	15	20	0.5333	0.4167	0.6	0.05	-0.55
SL4.0ch01	1394131	snp	28	20	0.4857	0.3714	0.5357	0.05	-0.4857
SL4.0ch01	1402653	indel	14	19	0.5414	0.4173	0.7143	0.0	-0.7143
SL4.0ch01	1409055	snp	27	23	0.4863	0.3688	0.6296	0.087	-0.5427
SL4.0ch01	1409120	indel	23	28	0.4689	0.3587	0.6087	0.1071	-0.5016
SL4.0ch01	1415917	snp	19	23	0.4943	0.389	0.6316	0.087	-0.5446
SL4.0ch01	1420424	snp	19	23	0.4943	0.389	0.5263	0.0	-0.5263
SL4.0ch01	1422350	indel	17	21	0.5154	0.409	0.6471	0.0952	-0.5518
SL4.0ch01	1430517	snp	13	18	0.5684	0.4359	0.6923	0.1111	-0.5812
SL4.0ch01	1435245	snp	10	17	0.5824	0.4471	0.7	0.1176	-0.5824
SL4.0ch01	1435868	snp	28	21	0.4881	0.381	0.5	0.0	-0.5
SL4.0ch01	1440727	snp	19	20	0.5342	0.3868	0.5789	0.0	-0.5789
SL4.0ch01	1450375	snp	27	29	0.4649	0.3589	0.5185	0.0345	-0.484
SL4.0ch01	1453373	snp	30	24	0.4667	0.3667	0.5667	0.0833	-0.4833
SL4.0ch01	1459609	snp	29	21	0.486	0.3777	0.6552	0.1429	-0.5123
SL4.0ch01	1479178	snp	16	17	0.5257	0.4375	0.6875	0.0	-0.6875
SL4.0ch01	1480428	snp	25	25	0.48	0.36	0.52	0.0	-0.52
SL4.0ch01	1483894	snp	23	23	0.4783	0.3913	0.7391	0.0	-0.7391
SL4.0ch01	1485818	indel	20	20	0.5	0.4	0.6	0.0	-0.6
SL4.0ch01	1501170	snp	17	24	0.5074	0.3971	0.6471	0.125	-0.5221
SL4.0ch01	1505779	snp	19	22	0.4952	0.3876	0.6316	0.1364	-0.4952
SL4.0ch01	1506828	indel	22	21	0.4957	0.3939	0.5455	0.0476	-0.4978
SL4.0ch01	1514503	snp	23	23	0.4783	0.3913	0.5217	0.0435	-0.4783
SL4.0ch01	1517240	indel	27	20	0.4778	0.3778	0.5926	0.05	-0.5426
SL4.0ch01	1528630	snp	18	19	0.5175	0.4064	0.6111	0.0526	-0.5585
SL4.0ch01	1529716	snp	20	20	0.5	0.4	0.55	0.05	-0.5
SL4.0ch01	1533480	snp	29	24	0.4684	0.3635	0.5517	0.0833	-0.4684
SL4.0ch01	1561078	snp	21	19	0.5088	0.3935	0.6667	0.1053	-0.5614
SL4.0ch01	1581989	snp	19	15	0.5368	0.4175	0.6316	0.0667	-0.5649
SL4.0ch01	1593770	indel	11	24	0.5606	0.4356	0.8182	0.2083	-0.6098
SL4.0ch01	1595584	snp	16	31	0.496	0.3952	0.5625	0.0645	-0.498
SL4.0ch01	1605784	snp	25	24	0.4733	0.3817	0.52	0.0417	-0.4783
SL4.0ch01	1606267	snp	21	30	0.4762	0.381	0.619	0.1	-0.519
SL4.0ch01	1609730	snp	14	21	0.5476	0.4286	0.5714	0.0	-0.5714
SL4.0ch01	1631788	snp	19	18	0.5175	0.4064	0.5263	0.0	-0.5263
SL4.0ch01	1644754	indel	26	26	0.4615	0.3462	0.5769	0.1154	-0.4615
SL4.0ch01	1648905	indel	21	20	0.5119	0.3714	0.6667	0.1	-0.5667
SL4.0ch01	1661825	snp	27	30	0.4556	0.363	0.6296	0.0667	-0.563
SL4.0ch01	1665031	snp	23	19	0.4943	0.389	0.7826	0.1053	-0.6773
SL4.0ch01	1665322	indel	17	23	0.5038	0.4015	0.7647	0.0435	-0.7212
SL4.0ch01	1680347	snp	17	18	0.5392	0.4216	0.6471	0.0556	-0.5915
SL4.0ch01	1682235	snp	22	20	0.4818	0.3864	0.6364	0.05	-0.5864
SL4.0ch01	1687596	snp	22	24	0.4886	0.3864	0.5	0.0	-0.5
SL4.0ch01	1688431	snp	17	19	0.5077	0.4025	0.5882	0.0526	-0.5356
SL4.0ch01	1694465	snp	15	22	0.5273	0.397	0.6667	0.1364	-0.5303
SL4.0ch01	1697136	snp	19	17	0.5077	0.4025	0.5263	0.0	-0.5263
SL4.0ch01	1707367	snp	16	26	0.5048	0.3942	0.5625	0.0385	-0.524
SL4.0ch01	1712571	indel	15	25	0.52	0.4	0.6	0.08	-0.52
SL4.0ch01	1715671	snp	8	20	0.625	0.475	0.625	0.0	-0.625
SL4.0ch01	1723708	snp	16	22	0.5227	0.4034	0.625	0.0	-0.625
SL4.0ch01	1730773	snp	11	25	0.5382	0.4182	0.7273	0.08	-0.6473
SL4.0ch01	1756412	snp	23	27	0.4863	0.3688	0.5652	0.037	-0.5282
SL4.0ch01	1770061	snp	21	28	0.4881	0.381	0.619	0.0357	-0.5833
SL4.0ch01	1770226	indel	32	24	0.4583	0.3646	0.5312	0.0	-0.5312
SL4.0ch01	1770670	indel	22	25	0.4927	0.3673	0.5455	0.04	-0.5055
SL4.0ch01	1772877	snp	19	19	0.5263	0.4211	0.5789	0.0526	-0.5263
SL4.0ch01	1788747	snp	18	22	0.5051	0.404	0.5556	0.0455	-0.5101
SL4.0ch01	1794482	snp	11	20	0.5682	0.4273	0.6364	0.05	-0.5864
SL4.0ch01	1799639	indel	22	25	0.4927	0.3673	0.5909	0.04	-0.5509
SL4.0ch01	1799728	snp	23	25	0.4957	0.3722	0.5652	0.0	-0.5652
SL4.0ch01	1816682	indel	23	23	0.4783	0.3913	0.5652	0.087	-0.4783
SL4.0ch01	1818137	snp	34	26	0.457	0.3575	0.5	0.0385	-0.4615
SL4.0ch01	1820830	indel	23	16	0.4891	0.3832	0.6957	0.125	-0.5707
SL4.0ch01	1821103	indel	21	18	0.5238	0.4048	0.5238	0.0	-0.5238
SL4.0ch01	1826355	snp	14	22	0.526	0.4156	0.5714	0.0455	-0.526
SL4.0ch01	1833060	snp	18	18	0.5	0.3889	0.5556	0.0556	-0.5
SL4.0ch01	1836863	snp	17	34	0.5	0.3824	0.7059	0.1765	-0.5294
SL4.0ch01	1852361	snp	23	16	0.4891	0.3832	0.5652	0.0	-0.5652
SL4.0ch01	1880368	indel	19	29	0.4791	0.3775	0.7368	0.0345	-0.7024
SL4.0ch01	1894342	snp	20	20	0.5	0.4	0.55	0.05	-0.5
SL4.0ch01	1898618	snp	22	26	0.4825	0.3741	0.5909	0.0385	-0.5524
SL4.0ch01	1907758	indel	16	15	0.5458	0.4208	0.625	0.0667	-0.5583
SL4.0ch01	1942482	snp	16	26	0.5048	0.3942	0.625	0.0769	-0.5481
SL4.0ch01	1943101	snp	26	28	0.4698	0.3681	0.5769	0.1071	-0.4698
SL4.0ch01	1956595	snp	12	13	0.6026	0.4487	0.6667	0.0	-0.6667
SL4.0ch01	1969908	indel	20	20	0.5	0.4	0.5	0.0	-0.5
SL4.0ch01	1973427	snp	29	26	0.4549	0.3515	0.6207	0.0	-0.6207
SL4.0ch01	1983709	indel	15	28	0.5143	0.4024	0.5333	0.0	-0.5333
SL4.0ch01	2004691	indel	29	17	0.503	0.3955	0.5517	0.0	-0.5517
SL4.0ch01	2019290	indel	19	18	0.5175	0.4064	0.5789	0.0556	-0.5234
SL4.0ch01	2020431	snp	24	32	0.4583	0.3646	0.5	0.0312	-0.4688
SL4.0ch01	2045135	snp	13	19	0.5304	0.4251	0.5385	0.0	-0.5385
SL4.0ch01	2051350	snp	18	15	0.5556	0.4222	0.5556	0.0	-0.5556
SL4.0ch01	2058545	snp	17	17	0.5294	0.4118	0.5882	0.0588	-0.5294
SL4.0ch01	2079115	snp	24	16	0.5208	0.3958	0.625	0.0	-0.625
SL4.0ch01	2151013	snp	22	16	0.5227	0.4034	0.6818	0.0625	-0.6193
SL4.0ch01	2159726	snp	26	26	0.4615	0.3462	0.5385	0.0769	-0.4615
SL4.0ch01	2175365	snp	23	13	0.5518	0.4214	0.5652	0.0	-0.5652
SL4.0ch01	2180470	snp	19	22	0.4952	0.3876	0.5263	0.0	-0.5263
SL4.0ch01	2199970	snp	28	17	0.5126	0.3971	0.5357	0.0	-0.5357
SL4.0ch01	2205403	snp	24	25	0.4733	0.3817	0.5833	0.04	-0.5433
SL4.0ch01	2267405	snp	27	18	0.5	0.3889	0.5556	0.0556	-0.5
SL4.0ch01	2270089	snp	13	23	0.5518	0.4214	0.6154	0.0435	-0.5719
SL4.0ch01	2280766	snp	10	18	0.5778	0.4556	0.6	0.0	-0.6
SL4.0ch01	2304617	snp	26	26	0.4615	0.3462	0.5385	0.0385	-0.5
SL4.0ch01	2311588	snp	14	14	0.5714	0.4286	0.6429	0.0714	-0.5714
SL4.0ch01	2311735	snp	23	17	0.5038	0.4015	0.5217	0.0	-0.5217
SL4.0ch01	2323737	snp	22	26	0.4825	0.3741	0.5909	0.0769	-0.514
SL4.0ch01	2328319	snp	35	26	0.4549	0.3495	0.5429	0.0769	-0.4659
SL4.0ch01	2328413	indel	27	16	0.5162	0.3912	0.5185	0.0	-0.5185
SL4.0ch01	2329287	snp	23	22	0.5079	0.3775	0.5652	0.0455	-0.5198
SL4.0ch01	2341943	snp	12	17	0.5637	0.4314	0.6667	0.0	-0.6667
SL4.0ch01	2344775	snp	27	18	0.5	0.3889	0.5556	0.0556	-0.5
SL4.0ch01	2350996	snp	22	21	0.4957	0.3939	0.5455	0.0476	-0.4978
SL4.0ch01	2425762	snp	17	32	0.4871	0.386	0.5882	0.0625	-0.5257
SL4.0ch01	2428769	snp	25	24	0.4733	0.3817	0.56	0.0833	-0.4767
SL4.0ch01	2443221	indel	25	15	0.52	0.4	0.56	0.0	-0.56
SL4.0ch01	2473580	snp	16	32	0.5	0.375	0.5625	0.0625	-0.5
SL4.0ch01	2534171	snp	15	25	0.52	0.4	0.7333	0.0	-0.7333
SL4.0ch01	2534990	indel	17	24	0.5074	0.3971	0.6471	0.125	-0.5221
SL4.0ch01	2546088	snp	16	21	0.5268	0.4018	0.625	0.0952	-0.5298
SL4.0ch01	2554207	indel	19	18	0.5175	0.4064	0.5789	0.0	-0.5789
SL4.0ch01	2816485	snp	25	19	0.5095	0.3895	0.52	0.0	-0.52
SL4.0ch01	6654298	indel	25	20	0.49	0.38	0.04	1.0	0.96
SL4.0ch01	12889776	indel	21	16	0.5268	0.4018	0.0952	1.0	0.9048
SL4.0ch01	16315784	indel	13	24	0.5481	0.4231	1.0	0.0833	-0.9167
SL4.0ch01	20680161	indel	20	18	0.5222	0.4	0.1	1.0	0.9
SL4.0ch01	24277067	indel	11	18	0.5758	0.4293	1.0	0.0	-1.0
SL4.0ch01	28517869	indel	14	23	0.5248	0.4099	0.0	0.913	0.913
SL4.0ch01	69992703	indel	23	19	0.4943	0.389	0.913	0.0	-0.913
SL4.0ch01	81572656	indel	24	13	0.5192	0.4006	0.8333	0.0	-0.8333
SL4.0ch01	81572658	indel	23	13	0.5518	0.4214	0.9565	0.0	-0.9565
SL4.0ch02	7353215	indel	21	18	0.5238	0.4048	0.1429	1.0	0.8571
SL4.0ch02	8231306	indel	27	23	0.4863	0.3752	0.3704	0.8696	0.4992
SL4.0ch02	37854939	indel	16	28	0.5089	0.3929	1.0	0.0714	-0.9286
SL4.0ch02	38146405	indel	21	11	0.5758	0.4416	0.0952	0.9091	0.8139
SL4.0ch02	48335344	indel	10	15	0.6	0.4667	1.0	0.0667	-0.9333
SL4.0ch03	4945968	snp	13	25	0.5292	0.4123	0.7692	0.2	-0.5692
SL4.0ch03	4949255	snp	20	18	0.5222	0.4	0.55	0.0	-0.55
SL4.0ch03	5079015	snp	20	19	0.5342	0.3868	0.85	0.3158	-0.5342
SL4.0ch03	5148643	indel	9	34	0.5654	0.4477	0.7778	0.0882	-0.6895
SL4.0ch03	5165581	indel	16	18	0.5278	0.4167	0.75	0.1667	-0.5833
SL4.0ch03	5189998	indel	22	28	0.4838	0.3799	0.6818	0.1786	-0.5032
SL4.0ch03	5338156	snp	16	15	0.5458	0.4208	0.8125	0.2	-0.6125
SL4.0ch03	5345510	snp	21	26	0.4744	0.3681	0.6667	0.1923	-0.4744
SL4.0ch03	5353382	indel	12	21	0.5714	0.4286	0.6667	0.0952	-0.5714
SL4.0ch03	5381275	indel	30	21	0.4762	0.381	0.6667	0.1905	-0.4762
SL4.0ch03	5485355	snp	8	19	0.6118	0.4737	0.625	0.0	-0.625
SL4.0ch03	5526429	snp	14	20	0.5571	0.4286	0.6429	0.05	-0.5929
SL4.0ch03	5574361	snp	9	20	0.5889	0.4667	0.7778	0.1	-0.6778
SL4.0ch03	21368437	snp	19	19	0.5263	0.4211	0.6316	0.1053	-0.5263
SL4.0ch03	41560295	snp	28	12	0.5476	0.4167	0.7143	0.0	-0.7143
SL4.0ch03	63745785	indel	21	18	0.5238	0.4048	1.0	0.0	-1.0
SL4.0ch04	32951538	indel	10	15	0.6	0.4667	0.1	1.0	0.9
SL4.0ch04	34949902	indel	16	26	0.5048	0.3942	1.0	0.0769	-0.9231
SL4.0ch04	34949910	indel	16	24	0.5208	0.3958	1.0	0.0417	-0.9583
SL4.0ch04	58460882	indel	14	21	0.5476	0.4286	0.0	1.0	1.0
SL4.0ch04	59480638	indel	26	20	0.5038	0.3885	0.8846	0.0	-0.8846
SL4.0ch05	2410474	indel	19	8	0.6118	0.4737	0.9474	0.0	-0.9474
SL4.0ch05	4404918	indel	25	15	0.52	0.4	0.92	0.0	-0.92
SL4.0ch05	50235688	indel	17	28	0.5126	0.3971	1.0	0.1071	-0.8929
SL4.0ch05	52779844	indel	24	9	0.5972	0.4444	1.0	0.0	-1.0
SL4.0ch05	62341780	indel	18	13	0.5684	0.4359	0.2222	0.8462	0.6239
SL4.0ch06	12672277	indel	22	15	0.5273	0.397	0.0455	1.0	0.9545
SL4.0ch06	42118102	snp	15	24	0.5083	0.4	0.8	0.25	-0.55
SL4.0ch07	24240970	indel	18	29	0.5019	0.3851	0.0	0.931	0.931
SL4.0ch07	65240482	indel	23	14	0.5248	0.4099	0.0435	1.0	0.9565
SL4.0ch07	67788826	snp	19	15	0.5368	0.4175	0.1053	0.8	0.6947
SL4.0ch08	1665745	indel	16	18	0.5278	0.4167	0.0	1.0	1.0
SL4.0ch08	48114953	snp	20	16	0.525	0.4125	0.7	0.0625	-0.6375
SL4.0ch08	56065482	indel	21	19	0.5088	0.3935	1.0	0.0	-1.0
SL4.0ch09	48793181	snp	23	27	0.4863	0.3688	0.087	0.6296	0.5427
SL4.0ch09	57775375	indel	13	12	0.6026	0.4487	0.0	1.0	1.0
SL4.0ch11	50535984	indel	25	14	0.5057	0.4029	0.96	0.0	-0.96
SL4.0ch12	579473	indel	18	20	0.5222	0.4	1.0	0.05	-0.95
SL4.0ch12	63986259	indel	18	13	0.5684	0.4359	1.0	0.0	-1.0