CHROM	POSI	variant	bulk1_depth	bulk2_depth	p99	p95	bulk1_SNPindex	bulk2_SNPindex	delta_SNPindex
SL4.0ch00	1083770	snp	21	14	0.5238	0.4048	0.5714	0.0714	-0.5
SL4.0ch00	6165500	indel	9	8	0.6528	0.5417	0.5556	0.0	-0.5556
SL4.0ch01	674029	snp	19	22	0.5096	0.3971	0.2105	0.6364	0.4258
SL4.0ch01	702801	indel	16	24	0.5208	0.3958	0.0	0.4167	0.4167
SL4.0ch01	739766	snp	13	12	0.6026	0.4487	0.0	0.5	0.5
SL4.0ch01	746361	indel	18	26	0.4872	0.3889	0.1667	0.5769	0.4103
SL4.0ch01	746443	snp	14	16	0.5446	0.4196	0.0714	0.5	0.4286
SL4.0ch01	746472	snp	15	14	0.581	0.4429	0.2	0.7143	0.5143
SL4.0ch01	755201	snp	23	28	0.4814	0.3665	0.3043	0.6786	0.3742
SL4.0ch01	769985	indel	17	29	0.4929	0.3813	0.0588	0.5862	0.5274
SL4.0ch01	825976	snp	13	8	0.6442	0.4904	0.3077	0.875	0.5673
SL4.0ch01	842708	snp	11	15	0.5939	0.4606	0.0	0.4667	0.4667
SL4.0ch01	842913	snp	9	12	0.6389	0.5	0.0	0.5	0.5
SL4.0ch01	863868	snp	17	23	0.5192	0.4015	0.1176	0.5652	0.4476
SL4.0ch01	868165	indel	13	20	0.5423	0.4154	0.3846	0.8	0.4154
SL4.0ch01	880545	indel	11	16	0.5682	0.4432	0.6364	0.1875	-0.4489
SL4.0ch01	917288	snp	11	12	0.6439	0.4773	0.2727	0.75	0.4773
SL4.0ch01	926975	snp	16	21	0.5238	0.3988	0.0625	0.5714	0.5089
SL4.0ch01	933937	indel	12	12	0.5833	0.5	0.0833	0.6667	0.5833
SL4.0ch01	933964	snp	11	9	0.6162	0.5051	0.0	0.5556	0.5556
SL4.0ch01	941425	snp	16	9	0.6042	0.4653	0.0625	0.5556	0.4931
SL4.0ch01	955035	snp	17	19	0.548	0.4025	0.1765	0.6316	0.4551
SL4.0ch01	982098	snp	9	11	0.6162	0.5051	0.1111	0.6364	0.5253
SL4.0ch01	985369	snp	9	11	0.6162	0.5051	0.7778	0.2727	-0.5051
SL4.0ch01	1011185	snp	19	10	0.5842	0.4368	0.1579	0.7	0.5421
SL4.0ch01	1023392	snp	8	21	0.5893	0.4762	0.625	0.1429	-0.4821
SL4.0ch01	1031142	snp	9	13	0.6239	0.4786	0.0	0.5385	0.5385
SL4.0ch01	1032845	snp	15	15	0.5333	0.4	0.2	0.6	0.4
SL4.0ch01	1046308	indel	15	15	0.5333	0.4	0.2667	0.6667	0.4
SL4.0ch01	1056516	snp	13	15	0.5795	0.4359	0.0	0.4667	0.4667
SL4.0ch01	1057421	snp	10	9	0.6778	0.4889	0.2	0.7778	0.5778
SL4.0ch01	1074741	snp	11	16	0.5682	0.4432	0.0909	0.6875	0.5966
SL4.0ch01	1083868	indel	22	29	0.4734	0.3715	0.1364	0.5172	0.3809
SL4.0ch01	1112155	snp	16	22	0.5227	0.4091	0.6875	0.2727	-0.4148
SL4.0ch01	1112821	snp	15	19	0.5333	0.4175	0.0667	0.5789	0.5123
SL4.0ch01	1150978	indel	10	18	0.5778	0.4556	0.0	0.5	0.5
SL4.0ch01	1190425	snp	15	17	0.5412	0.4314	0.2	0.6471	0.4471
SL4.0ch01	1191878	snp	15	19	0.5333	0.4175	0.2	0.6316	0.4316
SL4.0ch01	1192008	snp	19	11	0.555	0.4402	0.2105	0.7273	0.5167
SL4.0ch01	1216429	indel	16	11	0.5682	0.4432	0.1875	0.6364	0.4489
SL4.0ch01	1266609	snp	8	19	0.6118	0.4868	0.0	0.5263	0.5263
SL4.0ch01	1278908	snp	18	20	0.5222	0.3944	0.1667	0.6	0.4333
SL4.0ch01	1282296	snp	12	10	0.6333	0.4667	0.0	0.6	0.6
SL4.0ch01	1282322	indel	14	9	0.6032	0.4921	0.0	0.5556	0.5556
SL4.0ch01	1289379	snp	17	22	0.5374	0.4011	0.1176	0.5909	0.4733
SL4.0ch01	1312367	snp	16	18	0.5347	0.4167	0.0625	0.6667	0.6042
SL4.0ch01	1314383	snp	16	15	0.5458	0.4208	0.3125	0.7333	0.4208
SL4.0ch01	1314640	snp	10	11	0.6182	0.5182	0.2	0.7273	0.5273
SL4.0ch01	1316234	indel	23	25	0.4991	0.3791	0.1739	0.6	0.4261
SL4.0ch01	1340301	snp	14	14	0.5714	0.4286	0.2857	0.7143	0.4286
SL4.0ch01	1346308	snp	10	14	0.6143	0.4857	0.0	0.7143	0.7143
SL4.0ch01	1353241	snp	8	14	0.6429	0.5	0.0	0.5714	0.5714
SL4.0ch01	1353761	indel	21	17	0.5266	0.409	0.2857	0.7059	0.4202
SL4.0ch01	1353880	snp	18	14	0.5476	0.4286	0.3333	0.7857	0.4524
SL4.0ch01	1376962	snp	26	16	0.5192	0.399	0.2308	0.6875	0.4567
SL4.0ch01	1399717	indel	12	16	0.5833	0.4583	0.0	0.625	0.625
SL4.0ch01	1402166	indel	17	19	0.548	0.4025	0.0	0.5263	0.5263
SL4.0ch01	1402168	snp	16	21	0.5238	0.3988	0.0625	0.619	0.5565
SL4.0ch01	1402228	snp	16	15	0.5458	0.4208	0.0	0.4667	0.4667
SL4.0ch01	1409770	snp	9	19	0.5789	0.462	0.1111	0.5789	0.4678
SL4.0ch01	1413706	indel	9	27	0.5926	0.4444	0.0	0.4444	0.4444
SL4.0ch01	1431273	snp	18	20	0.5222	0.3944	0.2778	0.75	0.4722
SL4.0ch01	1438336	snp	21	16	0.5238	0.3988	0.2857	0.6875	0.4018
SL4.0ch01	1454022	snp	15	16	0.5458	0.4208	0.2667	0.75	0.4833
SL4.0ch01	1458428	snp	13	15	0.5795	0.4359	0.1538	0.6	0.4462
SL4.0ch01	1471926	indel	9	22	0.5707	0.4596	0.1111	0.6364	0.5253
SL4.0ch01	1495867	snp	14	26	0.5165	0.4011	0.3571	0.7692	0.4121
SL4.0ch01	1501267	snp	11	11	0.6364	0.4545	0.0909	0.6364	0.5455
SL4.0ch01	1518878	snp	15	16	0.5458	0.4208	0.3333	0.8125	0.4792
SL4.0ch01	1527627	snp	17	21	0.5266	0.409	0.0588	0.5238	0.465
SL4.0ch01	1528945	indel	15	24	0.5	0.4	0.0667	0.5417	0.475
SL4.0ch01	1532375	snp	11	18	0.5758	0.4495	0.0909	0.6667	0.5758
SL4.0ch01	1534454	snp	14	12	0.5595	0.4643	0.1429	0.6667	0.5238
SL4.0ch01	1539487	snp	18	14	0.5476	0.4286	0.3333	0.7857	0.4524
SL4.0ch01	1541281	snp	16	18	0.5347	0.4167	0.3125	0.8333	0.5208
SL4.0ch01	1546941	snp	22	11	0.5455	0.4545	0.2273	0.7273	0.5
SL4.0ch01	1573014	indel	13	15	0.5795	0.4359	0.1538	0.6	0.4462
SL4.0ch01	1583043	snp	9	14	0.6032	0.4921	0.0	0.5714	0.5714
SL4.0ch01	1584278	indel	10	16	0.5875	0.4625	0.2	0.75	0.55
SL4.0ch01	1587683	snp	15	17	0.5412	0.4314	0.2667	0.7059	0.4392
SL4.0ch01	1590702	indel	15	18	0.5333	0.4333	0.2667	0.7222	0.4556
SL4.0ch01	1604057	snp	8	13	0.6442	0.4904	0.125	0.6923	0.5673
SL4.0ch01	1609730	snp	17	13	0.5339	0.4208	0.1765	0.6154	0.4389
SL4.0ch01	1628487	snp	11	19	0.555	0.4402	0.2727	0.7895	0.5167
SL4.0ch01	1633255	snp	11	13	0.6154	0.4685	0.1818	0.6923	0.5105
SL4.0ch01	1644986	snp	18	28	0.4921	0.3849	0.1667	0.6071	0.4405
SL4.0ch01	1707188	snp	11	20	0.5682	0.4364	0.0909	0.6	0.5091
SL4.0ch01	1712876	snp	18	19	0.5146	0.4035	0.0556	0.4737	0.4181
SL4.0ch01	1729430	snp	11	11	0.6364	0.4545	0.0909	0.5455	0.4545
SL4.0ch01	1733929	indel	21	15	0.5333	0.419	0.0952	0.5333	0.4381
SL4.0ch01	1738067	snp	14	26	0.5165	0.4011	0.1429	0.5769	0.4341
SL4.0ch01	1738383	snp	10	21	0.5667	0.4619	0.2	0.6667	0.4667
SL4.0ch01	1743348	snp	11	17	0.6096	0.4599	0.1818	0.7059	0.5241
SL4.0ch01	1744636	snp	10	15	0.6	0.4667	0.0	0.5333	0.5333
SL4.0ch01	1745617	snp	10	10	0.6	0.5	0.5	0.0	-0.5
SL4.0ch01	1775486	snp	15	23	0.5391	0.4087	0.2	0.6522	0.4522
SL4.0ch01	1777227	snp	19	15	0.5333	0.4175	0.2632	0.8	0.5368
SL4.0ch01	1791435	snp	15	15	0.5333	0.4	0.2	0.6	0.4
SL4.0ch01	1810838	snp	14	28	0.5357	0.3929	0.2143	0.6071	0.3929
SL4.0ch01	1816400	snp	14	17	0.5504	0.4202	0.2143	0.6471	0.4328
SL4.0ch01	1818137	snp	17	30	0.4902	0.3725	0.1176	0.5667	0.449
SL4.0ch01	1844757	indel	16	21	0.5238	0.3988	0.1875	0.619	0.4315
SL4.0ch01	1855144	snp	18	23	0.5048	0.3937	0.1667	0.6087	0.442
SL4.0ch01	1876157	snp	13	22	0.542	0.4196	0.0769	0.5	0.4231
SL4.0ch01	1877425	snp	14	27	0.5238	0.4153	0.1429	0.6296	0.4868
SL4.0ch01	1886762	indel	10	21	0.5667	0.4619	0.0	0.6667	0.6667
SL4.0ch01	1886795	snp	8	14	0.6429	0.5	0.0	0.7143	0.7143
SL4.0ch01	1899730	snp	13	20	0.5423	0.4154	0.1538	0.6	0.4462
SL4.0ch01	1901987	snp	14	14	0.5714	0.4286	0.2857	0.7143	0.4286
SL4.0ch01	1907026	snp	10	11	0.6182	0.5182	0.8	0.2727	-0.5273
SL4.0ch01	1936526	snp	15	25	0.52	0.4	0.1333	0.56	0.4267
SL4.0ch01	1955943	snp	14	20	0.5429	0.4214	0.2857	0.75	0.4643
SL4.0ch01	1985965	indel	16	17	0.5221	0.4007	0.0625	0.5294	0.4669
SL4.0ch01	1988630	indel	12	17	0.5735	0.4412	0.0833	0.5294	0.4461
SL4.0ch01	1988643	snp	12	17	0.5735	0.4412	0.0833	0.5294	0.4461
SL4.0ch01	2003508	indel	26	19	0.4818	0.3765	0.1923	0.6316	0.4393
SL4.0ch01	2020942	snp	15	22	0.5485	0.4152	0.0667	0.5	0.4333
SL4.0ch01	2028630	snp	8	14	0.6429	0.5	0.0	0.5	0.5
SL4.0ch01	2039995	indel	23	12	0.5362	0.4348	0.1304	0.5833	0.4529
SL4.0ch01	2048070	snp	12	20	0.5667	0.4333	0.1667	0.75	0.5833
SL4.0ch01	2055937	snp	8	15	0.6167	0.4833	0.0	0.6	0.6
SL4.0ch01	2057384	snp	12	12	0.5833	0.5	0.5833	0.0833	-0.5
SL4.0ch01	2064996	snp	11	20	0.5682	0.4364	0.1818	0.7	0.5182
SL4.0ch01	2071329	indel	21	12	0.5595	0.4286	0.1905	0.6667	0.4762
SL4.0ch01	2085499	snp	13	15	0.5795	0.4359	0.2308	0.7333	0.5026
SL4.0ch01	2098471	snp	11	15	0.5939	0.4606	0.0	0.4667	0.4667
SL4.0ch01	2098475	indel	11	14	0.6039	0.461	0.0	0.5	0.5
SL4.0ch01	2119437	snp	16	16	0.5625	0.4375	0.0625	0.5	0.4375
SL4.0ch01	2132673	snp	23	16	0.5272	0.4022	0.2174	0.625	0.4076
SL4.0ch01	2159572	indel	15	14	0.581	0.4429	0.2667	0.7143	0.4476
SL4.0ch01	2161963	indel	18	11	0.5758	0.4495	0.1667	0.6364	0.4697
SL4.0ch01	2162040	snp	14	17	0.5504	0.4202	0.2857	0.7059	0.4202
SL4.0ch01	2186074	snp	8	15	0.6167	0.4833	0.125	0.6667	0.5417
SL4.0ch01	2210592	snp	8	8	0.75	0.5	0.625	0.125	-0.5
SL4.0ch01	2227981	indel	21	26	0.4927	0.3773	0.1429	0.5385	0.3956
SL4.0ch01	2287367	snp	12	20	0.5667	0.4333	0.0833	0.55	0.4667
SL4.0ch01	2293592	indel	19	29	0.4791	0.3739	0.0526	0.5172	0.4646
SL4.0ch01	2293610	indel	15	29	0.492	0.3885	0.0	0.4483	0.4483
SL4.0ch01	2293620	snp	16	29	0.5022	0.4052	0.0625	0.4828	0.4203
SL4.0ch01	2296335	snp	17	19	0.548	0.4025	0.2353	0.7368	0.5015
SL4.0ch01	2334133	snp	10	9	0.6778	0.4889	0.5	0.0	-0.5
SL4.0ch01	2335111	indel	14	14	0.5714	0.4286	0.1429	0.5714	0.4286
SL4.0ch01	2340208	snp	9	11	0.6162	0.5051	0.1111	0.7273	0.6162
SL4.0ch01	2341201	snp	19	21	0.4987	0.3985	0.2632	0.6667	0.4035
SL4.0ch01	2341845	indel	14	18	0.5476	0.4286	0.1429	0.6667	0.5238
SL4.0ch01	2341943	snp	12	18	0.5556	0.4444	0.1667	0.7778	0.6111
SL4.0ch01	2348704	snp	22	22	0.5	0.3636	0.2727	0.6364	0.3636
SL4.0ch01	2359222	snp	17	18	0.5425	0.4216	0.1765	0.6111	0.4346
SL4.0ch01	2359271	indel	20	15	0.55	0.4167	0.2	0.8	0.6
SL4.0ch01	2359668	snp	14	17	0.5504	0.4202	0.1429	0.5882	0.4454
SL4.0ch01	2431140	indel	9	10	0.6778	0.4889	0.1111	0.6	0.4889
SL4.0ch01	2442184	snp	14	24	0.5357	0.4107	0.0714	0.5417	0.4702
SL4.0ch01	2523210	indel	8	11	0.6932	0.5114	0.625	0.0909	-0.5341
SL4.0ch01	2557904	indel	8	17	0.6397	0.4632	0.0	0.5294	0.5294
SL4.0ch01	2558083	snp	15	15	0.5333	0.4	0.0667	0.4667	0.4
SL4.0ch01	2584499	indel	10	20	0.55	0.45	0.6	0.1	-0.5
SL4.0ch01	2596816	indel	14	13	0.5604	0.467	0.1429	0.6154	0.4725
SL4.0ch01	2599793	indel	22	18	0.5152	0.404	0.1364	0.5556	0.4192
SL4.0ch01	2603478	snp	13	18	0.5684	0.4359	0.0769	0.6111	0.5342
SL4.0ch01	2610628	indel	13	19	0.5344	0.4291	0.0	0.5789	0.5789
SL4.0ch01	2610687	snp	13	21	0.5311	0.4249	0.0	0.5714	0.5714
SL4.0ch01	2610819	snp	10	15	0.6	0.4667	0.0	0.4667	0.4667
SL4.0ch01	2626209	indel	8	10	0.675	0.525	0.75	0.1	-0.65
SL4.0ch01	2639012	snp	15	13	0.5795	0.4359	0.2	0.6923	0.4923
SL4.0ch01	2654153	indel	15	20	0.55	0.4167	0.1333	0.55	0.4167
SL4.0ch01	2654210	snp	11	22	0.5455	0.4545	0.0909	0.5455	0.4545
SL4.0ch01	2669810	snp	18	17	0.5425	0.4216	0.2222	0.7059	0.4837
SL4.0ch01	2692959	indel	17	14	0.5504	0.4202	0.2353	0.7143	0.479
SL4.0ch01	2699464	snp	12	22	0.5606	0.4318	0.0833	0.5909	0.5076
SL4.0ch01	2702769	indel	14	13	0.5604	0.467	0.1429	0.6154	0.4725
SL4.0ch01	2708937	snp	9	24	0.5694	0.4444	0.1111	0.75	0.6389
SL4.0ch01	2711792	snp	10	17	0.5647	0.4471	0.0	0.4706	0.4706
SL4.0ch01	2717964	snp	18	21	0.5159	0.3968	0.1667	0.5714	0.4048
SL4.0ch01	2728303	indel	14	21	0.5238	0.4048	0.2143	0.6667	0.4524
SL4.0ch01	2764064	indel	14	23	0.5528	0.4099	0.1429	0.5652	0.4224
SL4.0ch01	2766988	snp	17	23	0.5192	0.4015	0.1176	0.7391	0.6215
SL4.0ch01	2770883	snp	10	14	0.6143	0.4857	0.2	0.7857	0.5857
SL4.0ch01	2772318	indel	16	18	0.5347	0.4167	0.125	0.5556	0.4306
SL4.0ch01	2772431	snp	13	13	0.6154	0.4615	0.0769	0.5385	0.4615
SL4.0ch01	2779023	snp	17	14	0.5504	0.4202	0.0588	0.5714	0.5126
SL4.0ch01	2786590	snp	12	16	0.5833	0.4583	0.1667	0.625	0.4583
SL4.0ch01	2788842	snp	13	14	0.5604	0.467	0.0769	0.6429	0.5659
SL4.0ch01	2791940	snp	11	20	0.5682	0.4364	0.0909	0.55	0.4591
SL4.0ch01	2794539	snp	13	16	0.5673	0.4423	0.0	0.5	0.5
SL4.0ch01	2816801	indel	14	20	0.5429	0.4214	0.1429	0.6	0.4571
SL4.0ch01	2816884	snp	11	23	0.5613	0.4269	0.0909	0.5217	0.4308
SL4.0ch01	2816911	snp	8	17	0.6397	0.4632	0.0	0.5882	0.5882
SL4.0ch01	2847351	snp	10	8	0.675	0.525	0.1	0.625	0.525
SL4.0ch01	2847836	indel	16	20	0.525	0.4125	0.3125	0.75	0.4375
SL4.0ch01	2881961	snp	14	19	0.5564	0.4173	0.0	0.4211	0.4211
SL4.0ch01	2887713	snp	14	26	0.5165	0.4011	0.2143	0.6538	0.4396
SL4.0ch01	2896998	snp	9	18	0.6111	0.4444	0.1111	0.7778	0.6667
SL4.0ch01	2923256	snp	12	13	0.6026	0.4487	0.1667	0.6154	0.4487
SL4.0ch01	2928855	snp	8	16	0.625	0.5	0.125	0.625	0.5
SL4.0ch01	2980410	snp	12	10	0.6333	0.4667	0.0	0.6	0.6
SL4.0ch01	2988024	snp	9	9	0.6667	0.5556	0.0	0.6667	0.6667
SL4.0ch01	2994160	snp	18	25	0.4978	0.3933	0.1111	0.56	0.4489
SL4.0ch01	2996377	snp	20	28	0.4786	0.3786	0.15	0.6071	0.4571
SL4.0ch01	3011682	snp	13	17	0.5339	0.4208	0.2308	0.7647	0.5339
SL4.0ch01	3017148	snp	13	19	0.5344	0.4291	0.2308	0.6842	0.4534
SL4.0ch01	3028163	indel	10	29	0.5552	0.4241	0.2	0.6552	0.4552
SL4.0ch01	3029194	indel	17	12	0.5735	0.4412	0.0588	0.5833	0.5245
SL4.0ch01	3035966	snp	18	11	0.5758	0.4495	0.1111	0.6364	0.5253
SL4.0ch01	3039038	snp	15	15	0.5333	0.4	0.2	0.6	0.4
SL4.0ch01	3055173	snp	11	19	0.555	0.4402	0.1818	0.6316	0.4498
SL4.0ch01	3061094	snp	9	19	0.5789	0.462	0.0	0.4737	0.4737
SL4.0ch01	3065631	snp	13	18	0.5684	0.4359	0.1538	0.6111	0.4573
SL4.0ch01	3070657	snp	15	13	0.5795	0.4359	0.1333	0.6154	0.4821
SL4.0ch01	3106581	snp	9	17	0.6013	0.4837	0.0	0.5882	0.5882
SL4.0ch01	3122184	snp	26	10	0.5692	0.4385	0.0385	0.5	0.4615
SL4.0ch01	3126122	snp	14	20	0.5429	0.4214	0.2143	0.65	0.4357
SL4.0ch01	3131117	snp	10	10	0.6	0.5	0.0	0.5	0.5
SL4.0ch01	3133627	snp	12	17	0.5735	0.4412	0.0	0.5294	0.5294
SL4.0ch01	3136290	snp	17	18	0.5425	0.4216	0.0588	0.5	0.4412
SL4.0ch01	3137288	indel	17	12	0.5735	0.4412	0.0	0.5	0.5
SL4.0ch01	3163788	snp	17	28	0.4916	0.395	0.1765	0.5714	0.395
SL4.0ch01	3193489	snp	15	30	0.5	0.4	0.0667	0.4667	0.4
SL4.0ch01	3193641	snp	17	20	0.5235	0.4059	0.1176	0.55	0.4324
SL4.0ch01	3230829	snp	16	17	0.5221	0.4007	0.0	0.5294	0.5294
SL4.0ch01	3443367	indel	13	24	0.5481	0.4071	0.0769	0.5833	0.5064
SL4.0ch01	3487114	snp	20	18	0.5222	0.3944	0.1	0.5	0.4
SL4.0ch01	3559954	snp	15	13	0.5795	0.4359	0.4	0.9231	0.5231
SL4.0ch01	3559969	snp	14	15	0.581	0.4429	0.4286	0.9333	0.5048
SL4.0ch01	3560323	snp	9	23	0.5845	0.4541	0.4444	0.9565	0.5121
SL4.0ch01	3567707	snp	15	30	0.5	0.4	0.5333	0.9667	0.4333
SL4.0ch01	3570342	indel	10	19	0.5842	0.4368	0.4	1.0	0.6
SL4.0ch01	3572240	snp	20	19	0.4921	0.3868	0.55	1.0	0.45
SL4.0ch01	3572369	indel	26	22	0.479	0.3671	0.6154	1.0	0.3846
SL4.0ch01	3572462	snp	18	20	0.5222	0.3944	0.5556	1.0	0.4444
SL4.0ch01	3572877	snp	8	16	0.625	0.5	0.5	1.0	0.5
SL4.0ch01	3576266	snp	17	17	0.5294	0.4118	0.5882	1.0	0.4118
SL4.0ch01	3580663	snp	12	10	0.6333	0.4667	0.4167	0.9	0.4833
SL4.0ch01	3586699	snp	11	14	0.6039	0.461	0.2727	0.9286	0.6558
SL4.0ch01	3600250	snp	11	13	0.6154	0.4685	0.1818	0.7692	0.5874
SL4.0ch01	3608879	snp	12	12	0.5833	0.5	0.4167	1.0	0.5833
SL4.0ch01	3610377	snp	10	13	0.6	0.4692	0.3	0.8462	0.5462
SL4.0ch01	3615175	snp	16	20	0.525	0.4125	0.3125	0.85	0.5375
SL4.0ch01	3621299	indel	11	9	0.6162	0.5051	0.4545	1.0	0.5455
SL4.0ch01	3624806	snp	15	15	0.5333	0.4	0.6	1.0	0.4
SL4.0ch01	3642839	snp	14	17	0.5504	0.4202	0.4286	0.0	-0.4286
SL4.0ch01	3672056	indel	9	22	0.5707	0.4596	0.5556	0.0909	-0.4646
SL4.0ch01	3784604	snp	17	17	0.5294	0.4118	0.1765	0.6471	0.4706
SL4.0ch01	3837056	snp	10	16	0.5875	0.4625	0.1	0.5625	0.4625
SL4.0ch01	3893503	snp	10	17	0.5647	0.4471	0.5	0.0	-0.5
SL4.0ch01	3898197	indel	9	15	0.6	0.4889	0.5556	0.0667	-0.4889
SL4.0ch01	4020775	snp	17	9	0.6013	0.4837	0.6471	0.1111	-0.5359
SL4.0ch01	4024729	indel	10	21	0.5667	0.4619	0.6	0.0476	-0.5524
SL4.0ch01	4095428	snp	14	16	0.5446	0.4196	0.5714	0.0625	-0.5089
SL4.0ch01	4146875	snp	13	25	0.5292	0.4092	0.5385	0.12	-0.4185
SL4.0ch01	4199222	snp	12	34	0.5147	0.3971	0.6667	0.2059	-0.4608
SL4.0ch01	4491942	snp	11	21	0.5801	0.4416	0.1818	0.8095	0.6277
SL4.0ch01	20150196	snp	10	9	0.6778	0.4889	0.5	0.0	-0.5
SL4.0ch01	20680161	indel	13	20	0.5423	0.4154	1.0	0.05	-0.95
SL4.0ch01	21482485	indel	13	20	0.5423	0.4154	0.0	1.0	1.0
SL4.0ch01	24587269	snp	12	20	0.5667	0.4333	0.75	0.1	-0.65
SL4.0ch01	26946093	indel	14	20	0.5429	0.4214	0.9286	0.0	-0.9286
SL4.0ch01	27468578	indel	11	20	0.5682	0.4364	1.0	0.1	-0.9
SL4.0ch01	40104670	indel	16	17	0.5221	0.4007	0.0	1.0	1.0
SL4.0ch01	47761566	snp	8	12	0.6667	0.5	0.625	0.0833	-0.5417
SL4.0ch01	69992703	indel	11	23	0.5613	0.4269	0.0	0.8261	0.8261
SL4.0ch01	70472578	indel	17	13	0.5339	0.4208	0.0	0.4615	0.4615
SL4.0ch01	72198121	indel	12	21	0.5595	0.4286	0.8333	0.2857	-0.5476
SL4.0ch02	21930099	indel	13	28	0.5247	0.4121	1.0	0.1071	-0.8929
SL4.0ch02	38653729	snp	21	19	0.4987	0.3985	0.8571	0.2632	-0.594
SL4.0ch02	45728971	indel	13	22	0.542	0.4196	1.0	0.0455	-0.9545
SL4.0ch02	48735646	snp	16	22	0.5227	0.4091	1.0	0.5909	-0.4091
SL4.0ch02	50798439	indel	12	23	0.5362	0.4348	0.0	0.7826	0.7826
SL4.0ch02	52933059	snp	14	21	0.5238	0.4048	0.2143	0.6667	0.4524
SL4.0ch03	4936864	snp	9	16	0.6042	0.4653	0.5556	0.0	-0.5556
SL4.0ch03	4937370	snp	19	26	0.4818	0.3765	0.6842	0.1923	-0.4919
SL4.0ch03	4938064	indel	16	22	0.5227	0.4091	0.625	0.0	-0.625
SL4.0ch03	4942626	indel	8	10	0.675	0.525	0.75	0.2	-0.55
SL4.0ch03	4956856	snp	11	20	0.5682	0.4364	0.6364	0.1	-0.5364
SL4.0ch03	4959305	indel	16	30	0.5125	0.3875	0.5625	0.0333	-0.5292
SL4.0ch03	4961375	snp	10	29	0.5552	0.4241	0.7	0.1379	-0.5621
SL4.0ch03	4969792	indel	16	18	0.5347	0.4167	0.5	0.0	-0.5
SL4.0ch03	4978674	snp	14	24	0.5357	0.4107	0.5714	0.0833	-0.4881
SL4.0ch03	4981657	snp	16	18	0.5347	0.4167	0.4375	0.0	-0.4375
SL4.0ch03	4981827	indel	11	13	0.6154	0.4685	0.5455	0.0769	-0.4685
SL4.0ch03	4984971	snp	17	29	0.4929	0.3813	0.4706	0.069	-0.4016
SL4.0ch03	4990846	snp	8	16	0.625	0.5	0.75	0.1875	-0.5625
SL4.0ch03	4993825	indel	10	27	0.5667	0.4407	0.7	0.2222	-0.4778
SL4.0ch03	8518000	snp	12	28	0.5238	0.4167	0.5	0.0714	-0.4286
SL4.0ch03	10963551	snp	13	28	0.5247	0.4121	0.1538	0.5714	0.4176
SL4.0ch03	15787611	snp	12	10	0.6333	0.4667	0.1667	0.7	0.5333
SL4.0ch03	17655149	snp	12	18	0.5556	0.4444	0.75	0.2222	-0.5278
SL4.0ch03	19307309	snp	13	19	0.5344	0.4291	0.6154	0.1053	-0.5101
SL4.0ch03	19983339	snp	12	14	0.5595	0.4643	0.6667	0.1429	-0.5238
SL4.0ch03	20431737	snp	11	17	0.6096	0.4599	0.2727	0.7647	0.492
SL4.0ch03	22635147	snp	13	17	0.5339	0.4208	0.5385	0.1176	-0.4208
SL4.0ch03	27648896	snp	11	8	0.6932	0.5114	0.0909	0.875	0.7841
SL4.0ch03	40973252	snp	15	18	0.5333	0.4333	0.3333	0.7778	0.4444
SL4.0ch03	42773349	snp	9	20	0.5889	0.4389	0.0	0.45	0.45
SL4.0ch03	46097814	snp	8	23	0.5761	0.4783	0.75	0.0	-0.75
SL4.0ch03	48347531	snp	15	15	0.5333	0.4	0.0	0.4	0.4
SL4.0ch03	60758970	indel	13	20	0.5423	0.4154	0.0	1.0	1.0
SL4.0ch04	43144001	indel	17	23	0.5192	0.4015	1.0	0.087	-0.913
SL4.0ch05	510326	indel	19	25	0.4968	0.3895	1.0	0.08	-0.92
SL4.0ch05	2410474	indel	14	13	0.5604	0.467	0.9286	0.0	-0.9286
SL4.0ch05	6041016	indel	19	23	0.5126	0.389	0.8421	0.3478	-0.4943
SL4.0ch05	21330219	snp	10	18	0.5778	0.4556	0.9	0.2778	-0.6222
SL4.0ch05	60586485	indel	11	24	0.5682	0.4356	1.0	0.0833	-0.9167
SL4.0ch05	61899104	indel	10	25	0.56	0.44	1.0	0.12	-0.88
SL4.0ch06	3276942	snp	9	21	0.5873	0.4444	0.4444	0.0	-0.4444
SL4.0ch06	7291745	indel	12	21	0.5595	0.4286	0.6667	0.0476	-0.619
SL4.0ch06	15958653	indel	12	17	0.5735	0.4412	0.75	0.2353	-0.5147
SL4.0ch06	32854284	indel	8	19	0.6118	0.4868	0.5	0.0	-0.5
SL4.0ch06	39646780	snp	16	19	0.5493	0.4243	0.5625	0.1053	-0.4572
SL4.0ch06	39646786	snp	18	20	0.5222	0.3944	0.6111	0.1	-0.5111
SL4.0ch07	7267077	indel	22	20	0.5136	0.3818	0.7727	0.05	-0.7227
SL4.0ch07	8605891	snp	12	10	0.6333	0.4667	0.5	0.0	-0.5
SL4.0ch07	12645343	snp	15	26	0.5308	0.4051	0.2	0.7692	0.5692
SL4.0ch07	16025836	snp	17	10	0.5647	0.4471	0.4706	0.0	-0.4706
SL4.0ch07	17350096	snp	10	12	0.6333	0.4667	0.6	0.0	-0.6
SL4.0ch07	19246607	snp	13	12	0.6026	0.4487	0.6154	0.0	-0.6154
SL4.0ch07	24240970	indel	19	19	0.5263	0.4211	1.0	0.0	-1.0
SL4.0ch07	28219282	snp	18	22	0.5152	0.404	0.0	0.4091	0.4091
SL4.0ch07	32615753	snp	17	23	0.5192	0.4015	0.5882	0.0435	-0.5448
SL4.0ch07	33630203	snp	17	17	0.5294	0.4118	0.2941	0.7059	0.4118
SL4.0ch07	37440143	snp	12	16	0.5833	0.4583	0.6667	0.0625	-0.6042
SL4.0ch07	38769805	snp	15	9	0.6	0.4889	0.6	0.1111	-0.4889
SL4.0ch07	50150626	snp	21	22	0.4935	0.3939	0.6667	0.0909	-0.5758
SL4.0ch07	52324736	snp	18	14	0.5476	0.4286	0.6111	0.0714	-0.5397
SL4.0ch07	55140097	indel	10	16	0.5875	0.4625	0.5	0.0	-0.5
SL4.0ch08	1665745	indel	12	20	0.5667	0.4333	0.0	0.95	0.95
SL4.0ch08	22282910	snp	14	19	0.5564	0.4173	0.4286	0.0	-0.4286
SL4.0ch08	49238994	indel	13	17	0.5339	0.4208	0.0769	0.5882	0.5113
SL4.0ch08	54610181	indel	8	31	0.5847	0.4597	0.0	0.9677	0.9677
SL4.0ch08	61513571	indel	11	20	0.5682	0.4364	0.4545	0.0	-0.4545
SL4.0ch09	2794285	indel	12	18	0.5556	0.4444	0.1667	0.6111	0.4444
SL4.0ch09	19885053	snp	17	22	0.5374	0.4011	0.4706	0.0455	-0.4251
SL4.0ch10	19288280	indel	12	19	0.5482	0.4342	1.0	0.0526	-0.9474
SL4.0ch10	19839331	indel	18	19	0.5146	0.4035	0.8333	0.4211	-0.4123
SL4.0ch11	21256915	snp	18	14	0.5476	0.4286	0.2778	0.7143	0.4365
SL4.0ch11	30769274	indel	35	35	0.4571	0.3429	0.1714	0.5143	0.3429
SL4.0ch11	50535984	indel	13	27	0.5442	0.4017	0.0	0.9259	0.9259
SL4.0ch11	53165876	snp	11	19	0.555	0.4402	0.5455	0.0526	-0.4928
SL4.0ch11	53166719	indel	19	13	0.5344	0.4291	0.5263	0.0769	-0.4494
SL4.0ch11	53167223	snp	18	16	0.5347	0.4167	0.6667	0.0625	-0.6042
SL4.0ch11	53174050	snp	9	16	0.6042	0.4653	0.6667	0.1875	-0.4792
SL4.0ch11	53176645	snp	8	16	0.625	0.5	0.5	0.0	-0.5
SL4.0ch11	53187730	indel	17	22	0.5374	0.4011	1.0	0.1364	-0.8636
SL4.0ch11	53259749	snp	19	24	0.489	0.3925	0.4211	0.0	-0.4211
SL4.0ch11	53273898	snp	15	22	0.5485	0.4152	0.4667	0.0	-0.4667
SL4.0ch11	53306340	indel	12	24	0.5417	0.4167	0.5	0.0417	-0.4583
SL4.0ch11	53339121	indel	19	27	0.499	0.3879	0.4211	0.0	-0.4211
SL4.0ch11	53345418	indel	12	14	0.5595	0.4643	0.5	0.0	-0.5
SL4.0ch11	53397096	snp	16	21	0.5238	0.3988	0.5625	0.0	-0.5625
SL4.0ch11	53397929	snp	13	28	0.5247	0.4121	0.6154	0.0	-0.6154
SL4.0ch11	53399443	snp	14	15	0.581	0.4429	0.5	0.0	-0.5
SL4.0ch11	53399760	snp	14	17	0.5504	0.4202	0.5	0.0	-0.5
SL4.0ch11	53400033	snp	15	18	0.5333	0.4333	0.4667	0.0	-0.4667
SL4.0ch11	53401112	indel	17	24	0.5074	0.4069	0.4706	0.0	-0.4706
SL4.0ch11	53402595	snp	13	10	0.6	0.4692	0.6923	0.1	-0.5923
SL4.0ch11	53403307	snp	15	17	0.5412	0.4314	0.4667	0.0	-0.4667
SL4.0ch11	53404866	snp	14	22	0.539	0.4221	0.4286	0.0	-0.4286
SL4.0ch11	53404972	indel	9	21	0.5873	0.4444	0.4444	0.0	-0.4444
SL4.0ch11	53405115	snp	11	21	0.5801	0.4416	0.5455	0.0	-0.5455
SL4.0ch11	53406166	snp	12	27	0.5463	0.4167	0.4167	0.0	-0.4167
SL4.0ch11	53407507	snp	17	29	0.4929	0.3813	0.4706	0.0345	-0.4361
SL4.0ch11	53408314	snp	21	22	0.4935	0.3939	0.4762	0.0	-0.4762
SL4.0ch11	53408600	snp	11	18	0.5758	0.4495	0.6364	0.0	-0.6364
SL4.0ch11	53410476	snp	19	30	0.4895	0.3754	0.5789	0.0333	-0.5456
SL4.0ch11	53411382	indel	13	26	0.5385	0.4231	0.5385	0.0	-0.5385
SL4.0ch11	53412450	indel	19	10	0.5842	0.4368	0.6316	0.0	-0.6316
SL4.0ch11	53412507	snp	15	11	0.5939	0.4606	0.5333	0.0	-0.5333
SL4.0ch11	53412673	indel	19	17	0.548	0.4025	0.4737	0.0588	-0.4149
SL4.0ch11	53415663	snp	17	19	0.548	0.4025	0.5294	0.0	-0.5294
SL4.0ch11	53415864	snp	21	22	0.4935	0.3939	0.7143	0.0	-0.7143
SL4.0ch11	53415907	indel	22	22	0.5	0.3636	0.6818	0.0	-0.6818
SL4.0ch11	53419273	snp	13	21	0.5311	0.4249	0.6154	0.0	-0.6154
SL4.0ch11	53420935	snp	9	22	0.5707	0.4596	0.5556	0.0	-0.5556
SL4.0ch11	53422178	indel	10	8	0.675	0.525	0.8	0.0	-0.8
SL4.0ch11	53423793	snp	14	18	0.5476	0.4286	0.5714	0.0	-0.5714
SL4.0ch11	53424206	snp	8	16	0.625	0.5	0.5	0.0	-0.5
SL4.0ch11	53431542	snp	14	12	0.5595	0.4643	0.5714	0.0	-0.5714
SL4.0ch11	53432311	snp	13	17	0.5339	0.4208	0.7692	0.0588	-0.7104
SL4.0ch11	53432724	snp	17	18	0.5425	0.4216	0.5882	0.0556	-0.5327
SL4.0ch11	53433577	indel	13	13	0.6154	0.4615	0.6923	0.0	-0.6923
SL4.0ch11	53433685	snp	8	15	0.6167	0.4833	0.625	0.0	-0.625
SL4.0ch11	53434599	snp	16	18	0.5347	0.4167	0.5625	0.0556	-0.5069
SL4.0ch11	53434734	indel	13	27	0.5442	0.4017	0.5385	0.0	-0.5385
SL4.0ch11	53435216	snp	18	18	0.5556	0.3889	0.6111	0.0	-0.6111
SL4.0ch11	53437351	snp	13	13	0.6154	0.4615	0.4615	0.0	-0.4615
SL4.0ch11	53437834	snp	18	26	0.4872	0.3889	0.3889	0.0	-0.3889
SL4.0ch11	53441918	snp	8	18	0.5972	0.4722	0.5	0.0	-0.5
SL4.0ch11	53443353	snp	20	17	0.5235	0.4059	0.5	0.0	-0.5
SL4.0ch11	53443596	indel	13	13	0.6154	0.4615	0.4615	0.0	-0.4615
SL4.0ch11	53444730	indel	13	21	0.5311	0.4249	0.6154	0.0952	-0.5201
SL4.0ch11	53446774	snp	16	16	0.5625	0.4375	0.5	0.0625	-0.4375
SL4.0ch11	53446893	snp	9	18	0.6111	0.4444	0.5556	0.0556	-0.5
SL4.0ch11	53449379	snp	15	12	0.5833	0.45	0.6	0.0	-0.6
SL4.0ch11	53449957	snp	15	21	0.5333	0.419	0.5333	0.0952	-0.4381
SL4.0ch11	53450133	snp	15	21	0.5333	0.419	0.4667	0.0	-0.4667
SL4.0ch11	53450291	snp	18	24	0.5	0.3889	0.5556	0.0	-0.5556
SL4.0ch11	53451546	snp	9	23	0.5845	0.4541	0.5556	0.0	-0.5556
SL4.0ch11	53452517	snp	11	16	0.5682	0.4432	0.4545	0.0	-0.4545
SL4.0ch11	53454022	snp	12	11	0.6439	0.4773	0.5	0.0	-0.5
SL4.0ch11	53454496	indel	20	21	0.5167	0.4095	0.45	0.0	-0.45
SL4.0ch11	53454557	indel	20	21	0.5167	0.4095	0.5	0.0	-0.5
SL4.0ch11	53454898	indel	20	24	0.5	0.3917	0.7	0.0	-0.7
SL4.0ch11	53454993	snp	18	18	0.5556	0.3889	0.5	0.0	-0.5
SL4.0ch11	53456181	snp	11	10	0.6182	0.5182	0.5455	0.0	-0.5455
SL4.0ch11	53456682	snp	11	12	0.6439	0.4773	0.5455	0.0	-0.5455
SL4.0ch11	53458842	snp	13	27	0.5442	0.4017	0.5385	0.0	-0.5385
SL4.0ch11	53459093	snp	13	28	0.5247	0.4121	0.5385	0.0	-0.5385
SL4.0ch11	53459196	indel	11	24	0.5682	0.4356	0.7273	0.0	-0.7273
SL4.0ch11	53459225	snp	13	22	0.542	0.4196	0.6154	0.0	-0.6154
SL4.0ch11	53459701	indel	11	18	0.5758	0.4495	0.6364	0.0	-0.6364
SL4.0ch11	53459779	snp	15	21	0.5333	0.419	0.5333	0.0476	-0.4857
SL4.0ch11	53460574	snp	19	19	0.5263	0.4211	0.5789	0.0	-0.5789
SL4.0ch11	53460610	indel	25	21	0.4971	0.379	0.56	0.0	-0.56
SL4.0ch11	53467816	snp	16	15	0.5458	0.4208	0.5625	0.0	-0.5625
SL4.0ch11	53467826	indel	17	15	0.5412	0.4314	0.5294	0.0	-0.5294
SL4.0ch11	53468724	snp	13	28	0.5247	0.4121	0.7692	0.0357	-0.7335
SL4.0ch11	53469822	snp	16	23	0.5272	0.4022	0.5	0.0	-0.5
SL4.0ch11	53471750	snp	9	11	0.6162	0.5051	0.5556	0.0	-0.5556
SL4.0ch11	53479294	snp	13	25	0.5292	0.4092	0.6154	0.04	-0.5754
SL4.0ch11	53479480	snp	13	20	0.5423	0.4154	0.8462	0.0	-0.8462
SL4.0ch11	53481448	snp	18	25	0.4978	0.3933	0.5556	0.04	-0.5156
SL4.0ch11	53482121	snp	17	24	0.5074	0.4069	0.5294	0.0	-0.5294
SL4.0ch11	53483671	snp	22	19	0.5096	0.3971	0.5455	0.0	-0.5455
SL4.0ch11	53483821	indel	18	24	0.5	0.3889	0.5556	0.0	-0.5556
SL4.0ch11	53484769	snp	11	23	0.5613	0.4269	0.5455	0.0	-0.5455
SL4.0ch11	53487472	snp	9	19	0.5789	0.462	0.5556	0.0	-0.5556
SL4.0ch11	53487612	indel	18	19	0.5146	0.4035	0.5556	0.0526	-0.5029
SL4.0ch11	53487893	indel	10	20	0.55	0.45	0.6	0.0	-0.6
SL4.0ch11	53487934	indel	15	20	0.55	0.4167	0.5333	0.0	-0.5333
SL4.0ch11	53488406	snp	19	16	0.5493	0.4243	0.7368	0.0	-0.7368
SL4.0ch11	53488700	indel	17	19	0.548	0.4025	0.4706	0.0	-0.4706
SL4.0ch11	53489732	indel	18	25	0.4978	0.3933	0.6667	0.04	-0.6267
SL4.0ch11	53489801	snp	21	20	0.5167	0.4095	0.619	0.05	-0.569
SL4.0ch11	53490534	indel	23	23	0.5217	0.3913	0.4348	0.0435	-0.3913
SL4.0ch11	53490663	indel	17	20	0.5235	0.4059	0.5882	0.15	-0.4382
SL4.0ch11	53490806	snp	15	20	0.55	0.4167	0.6667	0.2	-0.4667
SL4.0ch11	53490828	indel	15	17	0.5412	0.4314	0.7333	0.1765	-0.5569
SL4.0ch11	53491735	snp	18	29	0.4885	0.3851	0.5	0.1034	-0.3966
SL4.0ch11	53492452	snp	9	8	0.6528	0.5417	0.6667	0.0	-0.6667
SL4.0ch11	53494984	indel	9	14	0.6032	0.4921	0.6667	0.0	-0.6667
SL4.0ch11	53495078	snp	8	18	0.5972	0.4722	0.5	0.0	-0.5
SL4.0ch11	53496022	indel	18	21	0.5159	0.3968	0.5	0.0952	-0.4048
SL4.0ch11	53496027	snp	15	22	0.5485	0.4152	0.5333	0.0909	-0.4424
SL4.0ch11	53497428	indel	9	18	0.6111	0.4444	0.5556	0.0	-0.5556
SL4.0ch11	53497856	snp	14	14	0.5714	0.4286	0.4286	0.0	-0.4286
SL4.0ch11	53499761	snp	8	20	0.6	0.475	0.5	0.0	-0.5
SL4.0ch11	53504580	indel	18	25	0.4978	0.3933	0.6667	0.08	-0.5867
SL4.0ch11	53505368	snp	9	17	0.6013	0.4837	0.6667	0.0588	-0.6078
SL4.0ch11	53505564	snp	10	25	0.56	0.44	0.5	0.0	-0.5
SL4.0ch11	53506925	snp	14	12	0.5595	0.4643	0.5714	0.0833	-0.4881
SL4.0ch11	53509098	indel	17	23	0.5192	0.4015	0.4706	0.0	-0.4706
SL4.0ch11	53509118	snp	14	24	0.5357	0.4107	0.5	0.0	-0.5
SL4.0ch11	53509867	snp	10	24	0.5667	0.4417	0.9	0.0	-0.9
SL4.0ch11	53511186	snp	21	30	0.481	0.3762	0.5714	0.0333	-0.5381
SL4.0ch11	53511360	snp	16	23	0.5272	0.4022	0.5625	0.0435	-0.519
SL4.0ch11	53511487	indel	28	26	0.478	0.3681	0.5	0.0769	-0.4231
SL4.0ch11	53511601	snp	21	19	0.4987	0.3985	0.4286	0.0	-0.4286
SL4.0ch11	53512093	snp	11	17	0.6096	0.4599	0.9091	0.0588	-0.8503
SL4.0ch11	53513788	snp	9	15	0.6	0.4889	0.6667	0.0	-0.6667
SL4.0ch11	53514561	snp	15	16	0.5458	0.4208	0.6	0.0	-0.6
SL4.0ch11	53516155	snp	9	20	0.5889	0.4389	0.4444	0.0	-0.4444
SL4.0ch11	53520207	snp	12	27	0.5463	0.4167	0.5	0.037	-0.463
SL4.0ch11	53520777	indel	14	18	0.5476	0.4286	0.5	0.0556	-0.4444
SL4.0ch11	53521346	snp	13	15	0.5795	0.4359	0.4615	0.0	-0.4615
SL4.0ch11	53521974	snp	19	12	0.5482	0.4342	0.4737	0.0	-0.4737
SL4.0ch11	53522134	snp	17	14	0.5504	0.4202	0.5294	0.0714	-0.458
SL4.0ch11	53528775	snp	18	28	0.4921	0.3849	0.5	0.0714	-0.4286
SL4.0ch11	53529373	snp	13	13	0.6154	0.4615	0.6154	0.0	-0.6154
SL4.0ch11	53529625	indel	9	24	0.5694	0.4444	0.5556	0.0417	-0.5139
SL4.0ch11	53529952	snp	13	12	0.6026	0.4487	0.4615	0.0	-0.4615
SL4.0ch11	53534577	snp	13	21	0.5311	0.4249	0.6923	0.0952	-0.5971
SL4.0ch11	53535060	snp	14	21	0.5238	0.4048	0.4286	0.0	-0.4286
SL4.0ch11	53535172	snp	15	22	0.5485	0.4152	0.4667	0.0	-0.4667
SL4.0ch11	53535964	snp	17	20	0.5235	0.4059	0.5882	0.05	-0.5382
SL4.0ch11	53536359	snp	15	20	0.55	0.4167	0.4667	0.05	-0.4167
SL4.0ch11	53536726	indel	8	15	0.6167	0.4833	0.5	0.0	-0.5
SL4.0ch11	53536767	snp	9	19	0.5789	0.462	0.5556	0.0	-0.5556
SL4.0ch11	53539240	indel	11	22	0.5455	0.4545	0.5455	0.0	-0.5455
SL4.0ch11	53540260	snp	10	29	0.5552	0.4241	0.5	0.0345	-0.4655
SL4.0ch11	53540980	snp	17	26	0.5136	0.3801	0.4706	0.0385	-0.4321
SL4.0ch11	53542278	snp	12	18	0.5556	0.4444	0.5833	0.0556	-0.5278
SL4.0ch11	53542522	snp	14	21	0.5238	0.4048	0.5	0.0476	-0.4524
SL4.0ch11	53544465	snp	16	26	0.5192	0.399	0.5625	0.0	-0.5625
SL4.0ch11	53545944	snp	17	24	0.5074	0.4069	0.4118	0.0	-0.4118
SL4.0ch11	53546581	snp	12	22	0.5606	0.4318	0.5	0.0	-0.5
SL4.0ch11	53546745	snp	13	24	0.5481	0.4071	0.5385	0.0	-0.5385
SL4.0ch11	53547624	indel	25	27	0.4637	0.3585	0.52	0.037	-0.483
SL4.0ch11	53547676	snp	20	26	0.4923	0.3808	0.6	0.0769	-0.5231
SL4.0ch11	53548195	indel	11	12	0.6439	0.4773	0.8182	0.1667	-0.6515
SL4.0ch11	53548215	snp	12	12	0.5833	0.5	0.75	0.1667	-0.5833
SL4.0ch11	53549523	snp	19	26	0.4818	0.3765	0.5789	0.0769	-0.502
SL4.0ch11	53550111	snp	17	14	0.5504	0.4202	0.5294	0.0714	-0.458
SL4.0ch11	53550215	snp	21	14	0.5238	0.4048	0.5238	0.0714	-0.4524
SL4.0ch11	53552797	snp	21	24	0.506	0.3869	0.5714	0.0	-0.5714
SL4.0ch11	53553910	indel	19	25	0.4968	0.3895	0.8421	0.0	-0.8421
SL4.0ch11	53553954	indel	13	21	0.5311	0.4249	0.7692	0.0	-0.7692
SL4.0ch11	53555606	snp	10	16	0.5875	0.4625	0.7	0.0	-0.7
SL4.0ch11	53555792	snp	13	13	0.6154	0.4615	0.6154	0.0	-0.6154
SL4.0ch11	53556379	snp	13	18	0.5684	0.4359	0.6154	0.0	-0.6154
SL4.0ch11	53556587	snp	21	16	0.5238	0.3988	0.4762	0.0	-0.4762
SL4.0ch11	53557690	snp	21	17	0.5266	0.409	0.4762	0.0588	-0.4174
SL4.0ch11	53558096	snp	15	25	0.52	0.4	0.6	0.12	-0.48
SL4.0ch11	53559171	snp	13	16	0.5673	0.4423	0.5385	0.0625	-0.476
SL4.0ch11	53559572	snp	14	25	0.5286	0.4171	0.5714	0.12	-0.4514
SL4.0ch11	53559858	snp	12	18	0.5556	0.4444	0.6667	0.0	-0.6667
SL4.0ch11	53559963	snp	10	23	0.5696	0.4522	0.6	0.0	-0.6
SL4.0ch11	53560203	snp	21	21	0.5238	0.381	0.4762	0.0	-0.4762
SL4.0ch11	53563370	snp	14	13	0.5604	0.467	0.5714	0.0769	-0.4945
SL4.0ch11	53565021	snp	13	20	0.5423	0.4154	0.6154	0.05	-0.5654
SL4.0ch11	53565281	indel	8	25	0.595	0.47	0.5	0.0	-0.5
SL4.0ch11	53565545	snp	14	17	0.5504	0.4202	0.5714	0.0588	-0.5126
SL4.0ch11	53569951	snp	17	12	0.5735	0.4412	0.5882	0.0	-0.5882
SL4.0ch11	53571836	indel	15	26	0.5308	0.4051	0.6667	0.1154	-0.5513
SL4.0ch11	53576674	snp	14	27	0.5238	0.4153	0.5	0.0	-0.5
SL4.0ch11	53577323	snp	12	27	0.5463	0.4167	0.5	0.0	-0.5
SL4.0ch11	53577458	indel	16	25	0.515	0.4025	0.5	0.04	-0.46
SL4.0ch11	53580025	snp	23	25	0.4991	0.3791	0.5217	0.08	-0.4417
SL4.0ch11	53582824	indel	13	22	0.542	0.4196	0.4615	0.0	-0.4615
SL4.0ch11	53582988	snp	13	28	0.5247	0.4121	0.5385	0.0714	-0.467
SL4.0ch11	53584545	snp	12	21	0.5595	0.4286	0.5	0.0	-0.5
SL4.0ch11	53586749	snp	13	27	0.5442	0.4017	0.5385	0.037	-0.5014
SL4.0ch11	53591431	snp	20	22	0.5136	0.3818	0.45	0.0455	-0.4045
SL4.0ch11	53591596	indel	14	21	0.5238	0.4048	0.4286	0.0	-0.4286
SL4.0ch11	53593906	snp	19	29	0.4791	0.3739	0.5263	0.1379	-0.3884
SL4.0ch11	53596329	snp	11	29	0.5298	0.4169	0.5455	0.0345	-0.511
SL4.0ch11	53596627	indel	12	12	0.5833	0.5	0.5	0.0	-0.5
SL4.0ch11	53597647	snp	13	10	0.6	0.4692	0.6154	0.1	-0.5154
SL4.0ch11	53602358	snp	8	15	0.6167	0.4833	0.5	0.0	-0.5
SL4.0ch11	53603739	snp	18	16	0.5347	0.4167	0.5556	0.0	-0.5556
SL4.0ch11	53604386	snp	13	16	0.5673	0.4423	0.6923	0.0	-0.6923
SL4.0ch11	53604650	snp	16	27	0.5046	0.3912	0.5625	0.1111	-0.4514
SL4.0ch11	53607014	snp	24	25	0.505	0.385	0.4583	0.04	-0.4183
SL4.0ch11	53608426	snp	25	20	0.5	0.39	0.56	0.1	-0.46
SL4.0ch11	53609026	snp	23	16	0.5272	0.4022	0.6087	0.0625	-0.5462
SL4.0ch11	53609345	snp	13	23	0.5518	0.4214	0.5385	0.087	-0.4515
SL4.0ch11	53609698	snp	13	16	0.5673	0.4423	0.5385	0.0	-0.5385
SL4.0ch11	53610685	indel	16	18	0.5347	0.4167	0.5625	0.0	-0.5625
SL4.0ch11	53611174	indel	14	27	0.5238	0.4153	0.6429	0.1481	-0.4947
SL4.0ch11	53613106	snp	14	14	0.5714	0.4286	0.5	0.0714	-0.4286
SL4.0ch11	53614739	snp	13	15	0.5795	0.4359	0.5385	0.0667	-0.4718
SL4.0ch11	53615125	indel	15	15	0.5333	0.4	0.5333	0.0	-0.5333
SL4.0ch11	53615698	snp	11	16	0.5682	0.4432	0.6364	0.0	-0.6364
SL4.0ch11	53615891	snp	12	25	0.5533	0.4267	0.5833	0.08	-0.5033
SL4.0ch11	53616014	snp	16	20	0.525	0.4125	0.625	0.1	-0.525
SL4.0ch11	53616875	snp	12	10	0.6333	0.4667	0.6667	0.0	-0.6667
SL4.0ch11	53617485	snp	8	13	0.6442	0.4904	0.625	0.0769	-0.5481
SL4.0ch11	53618036	snp	10	16	0.5875	0.4625	0.7	0.0625	-0.6375
SL4.0ch11	53619353	snp	14	19	0.5564	0.4173	0.5714	0.0526	-0.5188
SL4.0ch11	53619663	indel	8	8	0.75	0.5	0.5	0.0	-0.5
SL4.0ch11	53623993	snp	16	22	0.5227	0.4091	0.6875	0.0909	-0.5966
SL4.0ch11	53626019	snp	12	18	0.5556	0.4444	0.5833	0.0556	-0.5278
SL4.0ch11	53626767	snp	16	18	0.5347	0.4167	0.4375	0.0	-0.4375
SL4.0ch11	53627198	snp	11	24	0.5682	0.4356	0.6364	0.125	-0.5114
SL4.0ch11	53627820	indel	16	15	0.5458	0.4208	0.4375	0.0	-0.4375
SL4.0ch11	53628076	snp	15	15	0.5333	0.4	0.6	0.0667	-0.5333
SL4.0ch11	53628739	snp	21	18	0.5159	0.3968	0.4762	0.0556	-0.4206
SL4.0ch11	53629426	indel	15	24	0.5	0.4	0.5333	0.0417	-0.4917
SL4.0ch11	53633594	snp	11	23	0.5613	0.4269	0.5455	0.0435	-0.502
SL4.0ch11	53635861	snp	14	21	0.5238	0.4048	0.4286	0.0	-0.4286
SL4.0ch11	53636568	snp	14	23	0.5528	0.4099	0.5	0.0435	-0.4565
SL4.0ch11	53636693	snp	14	22	0.539	0.4221	0.5	0.0	-0.5
SL4.0ch11	53637503	snp	21	12	0.5595	0.4286	0.619	0.0	-0.619
SL4.0ch11	53637704	indel	28	28	0.4643	0.3571	0.3929	0.0	-0.3929
SL4.0ch11	53638838	snp	11	18	0.5758	0.4495	0.4545	0.0	-0.4545
SL4.0ch11	53639844	indel	23	25	0.4991	0.3791	0.5652	0.04	-0.5252
SL4.0ch11	53639959	indel	18	27	0.4815	0.3889	0.5	0.0	-0.5
SL4.0ch11	53640378	snp	12	16	0.5833	0.4583	0.5	0.0	-0.5
SL4.0ch11	53640684	snp	13	22	0.542	0.4196	0.6154	0.0455	-0.5699
SL4.0ch11	53640976	indel	11	21	0.5801	0.4416	0.5455	0.0	-0.5455
SL4.0ch11	53641023	snp	10	26	0.5692	0.4385	0.5	0.0	-0.5
SL4.0ch11	53641155	indel	15	19	0.5333	0.4175	0.6	0.0	-0.6
SL4.0ch11	53641433	snp	11	21	0.5801	0.4416	0.4545	0.0	-0.4545
SL4.0ch11	53643759	indel	11	22	0.5455	0.4545	0.6364	0.1364	-0.5
SL4.0ch11	53644632	snp	10	14	0.6143	0.4857	0.5	0.0	-0.5
SL4.0ch11	53646977	snp	9	15	0.6	0.4889	0.5556	0.0667	-0.4889
SL4.0ch11	53648036	snp	20	21	0.5167	0.4095	0.55	0.0476	-0.5024
SL4.0ch11	53648102	indel	25	25	0.48	0.36	0.48	0.04	-0.44
SL4.0ch11	53650829	snp	12	24	0.5417	0.4167	0.5	0.0417	-0.4583
SL4.0ch11	53654285	snp	15	25	0.52	0.4	0.5333	0.08	-0.4533
SL4.0ch11	53654564	indel	22	22	0.5	0.3636	0.5	0.0	-0.5
SL4.0ch11	53654702	snp	8	15	0.6167	0.4833	0.5	0.0	-0.5
SL4.0ch11	53655110	snp	20	26	0.4923	0.3808	0.5	0.0769	-0.4231
SL4.0ch11	53655335	snp	16	21	0.5238	0.3988	0.5	0.0476	-0.4524
SL4.0ch11	53655830	snp	16	25	0.515	0.4025	0.5	0.04	-0.46
SL4.0ch11	53656850	snp	11	19	0.555	0.4402	0.5455	0.0526	-0.4928
SL4.0ch11	53657095	snp	16	21	0.5238	0.3988	0.5	0.0	-0.5
SL4.0ch11	53657467	indel	11	20	0.5682	0.4364	0.5455	0.1	-0.4455
SL4.0ch11	53658782	snp	15	19	0.5333	0.4175	0.6	0.0	-0.6
SL4.0ch11	53660501	indel	17	17	0.5294	0.4118	0.4706	0.0588	-0.4118
SL4.0ch11	53662098	snp	21	15	0.5333	0.419	0.4762	0.0	-0.4762
SL4.0ch11	53663685	snp	9	19	0.5789	0.462	0.6667	0.0	-0.6667
SL4.0ch11	53663727	indel	11	23	0.5613	0.4269	0.5455	0.0	-0.5455
SL4.0ch11	53668371	snp	10	25	0.56	0.44	0.5	0.04	-0.46
SL4.0ch11	53668412	indel	9	28	0.5675	0.4563	0.5556	0.0	-0.5556
SL4.0ch11	53670570	snp	9	20	0.5889	0.4389	0.5556	0.05	-0.5056
SL4.0ch11	53670899	indel	11	19	0.555	0.4402	0.4545	0.0	-0.4545
SL4.0ch11	53671901	indel	11	18	0.5758	0.4495	0.4545	0.0	-0.4545
SL4.0ch11	53671933	snp	11	19	0.555	0.4402	0.4545	0.0	-0.4545
SL4.0ch11	53674857	indel	16	13	0.5673	0.4423	0.5625	0.0	-0.5625
SL4.0ch11	53675235	snp	10	36	0.55	0.4278	0.6	0.0556	-0.5444
SL4.0ch11	53678093	snp	13	15	0.5795	0.4359	0.5385	0.0667	-0.4718
SL4.0ch11	53679538	snp	21	26	0.4927	0.3773	0.5714	0.0769	-0.4945
SL4.0ch11	53680356	indel	18	22	0.5152	0.404	0.5556	0.0	-0.5556
SL4.0ch11	53703899	snp	11	18	0.5758	0.4495	0.4545	0.0	-0.4545
SL4.0ch11	53713312	snp	12	27	0.5463	0.4167	0.5	0.0	-0.5
SL4.0ch11	53713326	indel	11	25	0.5491	0.4291	0.4545	0.0	-0.4545
SL4.0ch11	53723330	snp	13	23	0.5518	0.4214	0.5385	0.0435	-0.495
SL4.0ch11	53730296	snp	16	26	0.5192	0.399	0.5	0.0	-0.5
SL4.0ch11	53831555	snp	14	16	0.5446	0.4196	0.5	0.0625	-0.4375
SL4.0ch11	53846074	snp	11	15	0.5939	0.4606	0.5455	0.0	-0.5455
SL4.0ch11	53853689	snp	19	26	0.4818	0.3765	0.5263	0.1154	-0.4109
SL4.0ch11	53870532	snp	13	13	0.6154	0.4615	0.6154	0.1538	-0.4615
SL4.0ch11	53937114	indel	15	21	0.5333	0.419	0.6667	0.0476	-0.619
SL4.0ch11	53937159	snp	14	20	0.5429	0.4214	0.5714	0.05	-0.5214
SL4.0ch11	54072272	snp	19	20	0.4921	0.3868	0.4737	0.05	-0.4237
SL4.0ch11	54083896	snp	8	12	0.6667	0.5	0.5	0.0	-0.5
SL4.0ch11	54130367	snp	11	23	0.5613	0.4269	0.6364	0.087	-0.5494
SL4.0ch11	54172600	snp	17	12	0.5735	0.4412	0.5294	0.0	-0.5294
SL4.0ch11	54176825	snp	14	24	0.5357	0.4107	0.5714	0.125	-0.4464
SL4.0ch11	54176990	snp	21	28	0.4762	0.369	0.5238	0.1429	-0.381
SL4.0ch11	54180805	snp	25	20	0.5	0.39	0.52	0.1	-0.42
SL4.0ch11	54203024	indel	17	32	0.4871	0.3695	0.4706	0.0938	-0.3768
SL4.0ch11	54214761	indel	12	18	0.5556	0.4444	0.5833	0.1111	-0.4722
SL4.0ch11	54315696	snp	17	24	0.5074	0.4069	0.5294	0.0833	-0.4461
SL4.0ch12	8306450	snp	13	18	0.5684	0.4359	0.0769	0.5556	0.4786
SL4.0ch12	31519185	snp	11	23	0.5613	0.4269	0.6364	0.1739	-0.4625
SL4.0ch12	33911735	snp	20	24	0.5	0.3917	0.75	0.3333	-0.4167
SL4.0ch12	39750822	snp	12	18	0.5556	0.4444	0.5833	0.0	-0.5833
SL4.0ch12	40846871	snp	16	25	0.515	0.4025	0.3125	0.72	0.4075
SL4.0ch12	64387683	indel	10	22	0.5727	0.4364	1.0	0.0455	-0.9545
SL4.0ch12	66282275	snp	11	20	0.5682	0.4364	0.2727	1.0	0.7273