CHROM	POSI	variant	bulk1_depth	bulk2_depth	p99	p95	bulk1_SNPindex	bulk2_SNPindex	delta_SNPindex
SL4.0ch01	12889786	indel	15	20	0.5333	0.4167	1.0	0.05	-0.95
SL4.0ch01	26946093	indel	24	17	0.4975	0.3873	0.0	1.0	1.0
SL4.0ch01	29279733	indel	17	25	0.5059	0.3882	0.0	0.92	0.92
SL4.0ch01	29855547	indel	19	17	0.5139	0.3963	0.2632	1.0	0.7368
SL4.0ch01	71525042	indel	16	15	0.55	0.425	0.9375	0.0	-0.9375
SL4.0ch02	1030757	snp	15	20	0.5333	0.4167	0.7333	0.15	-0.5833
SL4.0ch02	1970996	indel	26	37	0.4491	0.3565	0.5769	0.0541	-0.5229
SL4.0ch02	1971008	snp	20	33	0.4773	0.3667	0.6	0.0606	-0.5394
SL4.0ch02	2150431	snp	26	18	0.4915	0.3803	0.6923	0.1111	-0.5812
SL4.0ch02	3950156	snp	14	21	0.5238	0.4048	0.7143	0.1429	-0.5714
SL4.0ch02	5138389	snp	15	21	0.5238	0.4	0.6667	0.1429	-0.5238
SL4.0ch02	7353215	indel	8	18	0.5972	0.4722	1.0	0.1111	-0.8889
SL4.0ch02	8895924	indel	44	16	0.4886	0.3693	0.1364	0.625	0.4886
SL4.0ch02	10012916	indel	15	11	0.5758	0.4424	0.6667	0.0909	-0.5758
SL4.0ch02	10233186	snp	17	17	0.5294	0.4118	0.5882	0.0588	-0.5294
SL4.0ch02	10919180	indel	16	28	0.5	0.3839	0.6875	0.1786	-0.5089
SL4.0ch02	13238232	snp	9	26	0.5812	0.4658	0.7778	0.1538	-0.6239
SL4.0ch02	13242178	snp	13	13	0.5385	0.4615	0.6154	0.0769	-0.5385
SL4.0ch02	13918011	indel	13	23	0.5284	0.4114	1.0	0.2174	-0.7826
SL4.0ch02	14859644	snp	20	20	0.5	0.4	0.55	0.05	-0.5
SL4.0ch02	17832601	snp	14	30	0.5238	0.4143	0.6429	0.1	-0.5429
SL4.0ch02	19607990	indel	21	19	0.5138	0.3985	0.6667	0.0526	-0.614
SL4.0ch02	19818376	snp	17	17	0.5294	0.4118	0.5294	0.0	-0.5294
SL4.0ch02	23068864	indel	11	20	0.5682	0.4364	0.6364	0.05	-0.5864
SL4.0ch02	24232291	snp	9	22	0.5758	0.4545	0.6667	0.0909	-0.5758
SL4.0ch02	24375882	snp	10	24	0.5667	0.425	0.7	0.0	-0.7
SL4.0ch02	25026946	indel	18	20	0.5278	0.4167	0.7222	0.15	-0.5722
SL4.0ch02	25749554	indel	17	17	0.5294	0.4118	0.5294	0.0	-0.5294
SL4.0ch02	26426875	snp	14	21	0.5238	0.4048	0.7143	0.1905	-0.5238
SL4.0ch02	27246408	snp	15	24	0.5083	0.4	0.5333	0.0	-0.5333
SL4.0ch02	28313174	snp	8	18	0.5972	0.4722	0.75	0.0556	-0.6944
SL4.0ch02	32004492	indel	10	14	0.6143	0.4714	0.7	0.0714	-0.6286
SL4.0ch02	32096508	indel	10	14	0.6143	0.4714	0.9	0.1429	-0.7571
SL4.0ch02	32736002	indel	16	16	0.5625	0.4375	0.0625	0.625	0.5625
SL4.0ch02	33063178	snp	12	15	0.6	0.4667	0.6667	0.0667	-0.6
SL4.0ch02	33522997	indel	19	16	0.5296	0.4145	0.4211	1.0	0.5789
SL4.0ch02	35087002	indel	36	24	0.4583	0.375	0.6389	0.0833	-0.5556
SL4.0ch02	35704579	indel	14	9	0.6349	0.4921	0.0714	0.7778	0.7063
SL4.0ch02	36120602	indel	21	14	0.5238	0.4048	0.0476	0.5714	0.5238
SL4.0ch02	36463410	snp	21	16	0.5119	0.4018	0.0476	0.5625	0.5149
SL4.0ch02	36478467	indel	15	16	0.55	0.425	0.0667	0.625	0.5583
SL4.0ch02	38001824	snp	25	17	0.5059	0.3882	0.08	0.6471	0.5671
SL4.0ch02	38555195	indel	10	24	0.5667	0.425	0.9	0.0833	-0.8167
SL4.0ch02	39669601	snp	18	33	0.4848	0.3788	0.0556	0.5455	0.4899
SL4.0ch02	40140194	snp	20	19	0.4947	0.3868	0.55	0.0526	-0.4974
SL4.0ch02	40695287	indel	23	11	0.5613	0.4269	0.1304	1.0	0.8696
SL4.0ch02	48335344	indel	20	10	0.6	0.45	0.15	0.9	0.75
SL4.0ch02	50798439	indel	17	22	0.5241	0.4011	0.0	0.7727	0.7727
SL4.0ch03	5202800	indel	17	22	0.5241	0.4011	1.0	0.0	-1.0
SL4.0ch03	60758970	indel	12	18	0.5556	0.4444	0.0	1.0	1.0
SL4.0ch03	63745785	indel	8	19	0.6118	0.4737	0.125	1.0	0.875
SL4.0ch04	758548	indel	23	9	0.5845	0.4541	1.0	0.0	-1.0
SL4.0ch04	34949902	indel	20	12	0.55	0.4333	0.15	1.0	0.85
SL4.0ch04	34949910	indel	16	12	0.5625	0.4375	0.125	1.0	0.875
SL4.0ch04	58460882	indel	20	13	0.5423	0.4192	0.95	0.0	-0.95
SL4.0ch04	58481375	indel	19	12	0.5702	0.4342	0.1053	1.0	0.8947
SL4.0ch04	59017734	indel	14	29	0.5443	0.4064	0.0714	0.931	0.8596
SL4.0ch04	59480638	indel	10	25	0.56	0.44	0.0	0.92	0.92
SL4.0ch05	572728	indel	31	13	0.5236	0.4069	0.9355	0.0	-0.9355
SL4.0ch05	27252301	indel	32	15	0.5104	0.3937	0.0	0.5333	0.5333
SL4.0ch05	40110107	snp	22	30	0.4758	0.3697	0.0909	0.6333	0.5424
SL4.0ch05	50235688	indel	18	12	0.5556	0.4444	0.0556	1.0	0.9444
SL4.0ch05	51932843	indel	18	20	0.5278	0.4167	1.0	0.1	-0.9
SL4.0ch05	53050832	indel	25	17	0.5059	0.3882	0.04	1.0	0.96
SL4.0ch05	60586485	indel	17	39	0.4902	0.3801	1.0	0.0769	-0.9231
SL4.0ch05	60745590	indel	11	19	0.5933	0.4498	0.0	0.9474	0.9474
SL4.0ch06	12677908	indel	12	20	0.55	0.4333	1.0	0.05	-0.95
SL4.0ch06	14133293	indel	34	12	0.5343	0.4167	0.0882	1.0	0.9118
SL4.0ch06	18141356	indel	17	29	0.499	0.3813	1.0	0.0345	-0.9655
SL4.0ch06	39776383	indel	20	16	0.55	0.4125	0.8	0.0625	-0.7375
SL4.0ch07	10240881	indel	37	19	0.468	0.3599	0.027	1.0	0.973
SL4.0ch07	11255163	snp	14	13	0.5604	0.4725	0.6429	0.0769	-0.5659
SL4.0ch07	35965597	snp	12	18	0.5556	0.4444	0.75	0.1667	-0.5833
SL4.0ch07	58350232	indel	13	18	0.547	0.4145	0.0	0.9444	0.9444
SL4.0ch08	53252575	indel	23	13	0.5284	0.4114	0.8261	0.0	-0.8261
SL4.0ch08	55990754	indel	22	18	0.5051	0.3939	0.9545	0.0	-0.9545
SL4.0ch09	2949306	snp	13	20	0.5423	0.4192	0.7692	0.0	-0.7692
SL4.0ch09	2950868	indel	9	21	0.5873	0.4603	0.6667	0.0476	-0.619
SL4.0ch09	2951145	snp	20	19	0.4947	0.3868	0.55	0.0526	-0.4974
SL4.0ch09	2960283	snp	16	15	0.55	0.425	0.625	0.0	-0.625
SL4.0ch09	2962513	snp	15	21	0.5238	0.4	0.6	0.0476	-0.5524
SL4.0ch09	2962520	indel	15	21	0.5238	0.4	0.6	0.0476	-0.5524
SL4.0ch09	2962775	indel	17	18	0.5425	0.4248	0.7647	0.0	-0.7647
SL4.0ch09	2962796	snp	16	18	0.5278	0.4097	0.6875	0.0556	-0.6319
SL4.0ch09	2965568	snp	14	20	0.5357	0.4286	0.6429	0.05	-0.5929
SL4.0ch09	2970149	snp	16	26	0.5096	0.4038	0.625	0.0	-0.625
SL4.0ch09	2971078	snp	19	32	0.477	0.3717	0.6316	0.125	-0.5066
SL4.0ch09	2977484	indel	14	18	0.5635	0.4365	0.7857	0.0556	-0.7302
SL4.0ch09	2977509	snp	14	17	0.5378	0.4202	0.7857	0.0588	-0.7269
SL4.0ch09	2977548	indel	13	18	0.547	0.4145	0.6923	0.1111	-0.5812
SL4.0ch09	2983465	snp	26	26	0.4615	0.3462	0.5	0.0385	-0.4615
SL4.0ch09	2983660	snp	24	17	0.4975	0.3873	0.5417	0.0	-0.5417
SL4.0ch09	2985215	indel	14	16	0.5625	0.4196	0.6429	0.0625	-0.5804
SL4.0ch09	2985270	snp	15	14	0.581	0.4429	0.6667	0.0	-0.6667
SL4.0ch09	2985322	indel	14	15	0.581	0.4429	0.7143	0.0	-0.7143
SL4.0ch09	2986857	snp	16	23	0.5136	0.4022	0.625	0.0435	-0.5815
SL4.0ch09	2989634	snp	23	21	0.501	0.3747	0.5652	0.0476	-0.5176
SL4.0ch09	2989955	snp	19	24	0.4978	0.3925	0.5789	0.0417	-0.5373
SL4.0ch09	3004108	indel	20	26	0.4923	0.3808	0.5	0.0	-0.5
SL4.0ch09	3004708	indel	17	23	0.5192	0.3862	0.5294	0.0	-0.5294
SL4.0ch09	3004712	snp	16	20	0.55	0.4125	0.5625	0.0	-0.5625
SL4.0ch09	3014260	snp	27	35	0.4603	0.3492	0.5926	0.0571	-0.5354
SL4.0ch09	3020780	snp	30	23	0.4623	0.3652	0.5667	0.0435	-0.5232
SL4.0ch09	3020899	snp	29	22	0.4843	0.373	0.6552	0.0455	-0.6097
SL4.0ch09	3021849	snp	18	16	0.5278	0.4097	0.6111	0.0625	-0.5486
SL4.0ch09	3025322	snp	15	18	0.5333	0.4333	0.5333	0.0	-0.5333
SL4.0ch09	3028966	indel	30	31	0.4688	0.3462	0.6333	0.0645	-0.5688
SL4.0ch09	3030296	indel	9	16	0.625	0.4653	0.6667	0.0	-0.6667
SL4.0ch09	3030630	snp	10	19	0.5895	0.4368	0.8	0.0526	-0.7474
SL4.0ch09	3031340	snp	19	24	0.4978	0.3925	0.5263	0.0	-0.5263
SL4.0ch09	3040503	snp	20	25	0.48	0.38	0.55	0.0	-0.55
SL4.0ch09	3041005	snp	18	29	0.4808	0.3774	0.6111	0.0	-0.6111
SL4.0ch09	3041247	snp	19	21	0.5138	0.3985	0.5263	0.0	-0.5263
SL4.0ch09	3042022	indel	25	26	0.4892	0.3723	0.52	0.0	-0.52
SL4.0ch09	3042129	snp	23	16	0.5136	0.4022	0.5652	0.0	-0.5652
SL4.0ch09	3042616	snp	17	17	0.5294	0.4118	0.5294	0.0	-0.5294
SL4.0ch09	3053278	indel	8	23	0.5761	0.4837	0.625	0.0435	-0.5815
SL4.0ch09	3058848	indel	13	21	0.5604	0.4359	0.6154	0.0	-0.6154
SL4.0ch09	3064170	snp	14	17	0.5378	0.4202	0.8571	0.0588	-0.7983
SL4.0ch09	3066041	snp	23	21	0.501	0.3747	0.6522	0.0952	-0.5569
SL4.0ch09	3066153	indel	27	21	0.4815	0.3704	0.7037	0.0476	-0.6561
SL4.0ch09	3070170	indel	22	16	0.5114	0.4034	0.5909	0.0	-0.5909
SL4.0ch09	3072108	snp	19	22	0.5024	0.3876	0.7368	0.1818	-0.555
SL4.0ch09	3075030	snp	23	26	0.5033	0.3829	0.6087	0.0	-0.6087
SL4.0ch09	3079008	snp	16	21	0.5119	0.4018	0.5625	0.0476	-0.5149
SL4.0ch09	3081593	indel	29	25	0.4676	0.3697	0.7241	0.12	-0.6041
SL4.0ch09	3083378	indel	26	27	0.4715	0.3618	0.6923	0.0741	-0.6182
SL4.0ch09	3083804	snp	23	17	0.5192	0.3862	0.5217	0.0	-0.5217
SL4.0ch09	3084519	snp	16	24	0.5208	0.4167	0.5625	0.0	-0.5625
SL4.0ch09	3084836	snp	24	28	0.4702	0.369	0.5833	0.0357	-0.5476
SL4.0ch09	3088531	snp	21	20	0.5119	0.3762	0.5714	0.05	-0.5214
SL4.0ch09	3090648	snp	26	19	0.496	0.3806	0.5	0.0	-0.5
SL4.0ch09	3093072	snp	17	23	0.5192	0.3862	0.7059	0.1304	-0.5754
SL4.0ch09	3098150	snp	13	23	0.5284	0.4114	0.6923	0.0435	-0.6488
SL4.0ch09	3107757	snp	19	25	0.5095	0.3895	0.6316	0.12	-0.5116
SL4.0ch09	3108459	snp	21	17	0.5266	0.3978	0.5714	0.0	-0.5714
SL4.0ch09	3109027	snp	22	21	0.4913	0.3939	0.5909	0.0	-0.5909
SL4.0ch09	3113342	snp	25	19	0.5095	0.3895	0.68	0.0526	-0.6274
SL4.0ch09	3117290	indel	21	24	0.5	0.3869	0.8095	0.125	-0.6845
SL4.0ch09	3120093	snp	18	23	0.5048	0.3986	0.6111	0.087	-0.5242
SL4.0ch09	3120664	snp	17	28	0.5042	0.3845	0.6471	0.1071	-0.5399
SL4.0ch09	3122479	snp	24	22	0.4886	0.375	0.5417	0.0455	-0.4962
SL4.0ch09	3125055	indel	18	22	0.5051	0.3939	0.6667	0.0909	-0.5758
SL4.0ch09	3129986	snp	24	22	0.4886	0.375	0.5417	0.0	-0.5417
SL4.0ch09	3130388	snp	15	19	0.5228	0.414	0.5333	0.0	-0.5333
SL4.0ch09	3130571	indel	17	21	0.5266	0.3978	0.5294	0.0	-0.5294
SL4.0ch09	3134164	snp	21	23	0.501	0.3747	0.619	0.087	-0.5321
SL4.0ch09	3140995	snp	23	20	0.4826	0.3783	0.5652	0.05	-0.5152
SL4.0ch09	3148559	snp	21	21	0.4762	0.381	0.4762	0.0	-0.4762
SL4.0ch09	3148698	snp	22	23	0.5079	0.3794	0.5909	0.0435	-0.5474
SL4.0ch09	3151270	snp	28	31	0.4528	0.356	0.5714	0.0323	-0.5392
SL4.0ch09	3155311	snp	15	21	0.5238	0.4	0.6	0.0	-0.6
SL4.0ch09	3158204	indel	23	15	0.5391	0.4087	0.6522	0.0667	-0.5855
SL4.0ch09	3159138	snp	23	24	0.4855	0.3659	0.5652	0.0417	-0.5236
SL4.0ch09	3159179	indel	20	18	0.5278	0.4167	0.55	0.0	-0.55
SL4.0ch09	3160478	indel	19	33	0.4864	0.3732	0.6316	0.0606	-0.571
SL4.0ch09	3169052	snp	12	23	0.5362	0.4058	0.6667	0.087	-0.5797
SL4.0ch09	3169136	indel	15	30	0.5	0.4	0.6667	0.0333	-0.6333
SL4.0ch09	3175239	snp	16	23	0.5136	0.4022	0.5625	0.0435	-0.519
SL4.0ch09	3178242	snp	8	23	0.5761	0.4837	0.625	0.0435	-0.5815
SL4.0ch09	3186106	snp	24	35	0.4643	0.3571	0.625	0.0857	-0.5393
SL4.0ch09	3195984	snp	14	23	0.5248	0.4099	0.6429	0.087	-0.5559
SL4.0ch09	3198539	snp	14	26	0.5165	0.4011	0.5714	0.0385	-0.533
SL4.0ch09	3201873	snp	17	16	0.5184	0.4044	0.5294	0.0	-0.5294
SL4.0ch09	3203225	indel	40	29	0.4431	0.3431	0.5	0.0345	-0.4655
SL4.0ch09	3206445	snp	11	21	0.5411	0.4416	0.5455	0.0	-0.5455
SL4.0ch09	3206611	indel	21	19	0.5138	0.3985	0.5238	0.0	-0.5238
SL4.0ch09	3206613	snp	21	18	0.5238	0.3968	0.5238	0.0	-0.5238
SL4.0ch09	3210371	snp	13	13	0.5385	0.4615	0.6154	0.0769	-0.5385
SL4.0ch09	3231040	snp	20	23	0.4826	0.3783	0.55	0.0	-0.55
SL4.0ch09	3233258	snp	18	20	0.5278	0.4167	0.8333	0.05	-0.7833
SL4.0ch09	3238568	snp	14	21	0.5238	0.4048	0.5714	0.0476	-0.5238
SL4.0ch09	3245307	snp	20	19	0.4947	0.3868	0.6	0.0	-0.6
SL4.0ch09	3248379	indel	10	14	0.6143	0.4714	0.7	0.0714	-0.6286
SL4.0ch09	3249005	snp	17	27	0.5054	0.3943	0.6471	0.037	-0.61
SL4.0ch09	3269140	indel	18	28	0.496	0.3889	0.5556	0.0357	-0.5198
SL4.0ch09	3271027	indel	17	21	0.5266	0.3978	0.6471	0.0	-0.6471
SL4.0ch09	3276523	snp	16	23	0.5136	0.4022	0.625	0.0435	-0.5815
SL4.0ch09	3276814	indel	20	31	0.4774	0.3742	0.7	0.0645	-0.6355
SL4.0ch09	3276834	snp	16	28	0.5	0.3839	0.5625	0.0357	-0.5268
SL4.0ch09	3278365	indel	22	28	0.4773	0.3701	0.5455	0.0	-0.5455
SL4.0ch09	3278977	indel	17	19	0.5139	0.3963	0.5882	0.0526	-0.5356
SL4.0ch09	3282474	indel	25	28	0.4786	0.3586	0.52	0.0357	-0.4843
SL4.0ch09	3282522	snp	21	30	0.4762	0.3667	0.5714	0.0333	-0.5381
SL4.0ch09	3284536	snp	25	24	0.4717	0.3517	0.6	0.125	-0.475
SL4.0ch09	3285020	snp	13	20	0.5423	0.4192	0.7692	0.0	-0.7692
SL4.0ch09	3286757	indel	12	12	0.5833	0.5	0.6667	0.0	-0.6667
SL4.0ch09	3289294	indel	13	20	0.5423	0.4192	0.6923	0.1	-0.5923
SL4.0ch09	3289773	indel	15	24	0.5083	0.4	0.6	0.0417	-0.5583
SL4.0ch09	3292337	snp	17	19	0.5139	0.3963	0.6471	0.0526	-0.5944
SL4.0ch09	3292611	snp	21	14	0.5238	0.4048	0.6667	0.0	-0.6667
SL4.0ch09	3296576	snp	21	15	0.5238	0.4	0.619	0.0	-0.619
SL4.0ch09	3296843	snp	24	18	0.5139	0.4028	0.625	0.0556	-0.5694
SL4.0ch09	3298176	snp	22	19	0.5024	0.3876	0.6364	0.1053	-0.5311
SL4.0ch09	3298510	snp	20	19	0.4947	0.3868	0.65	0.0	-0.65
SL4.0ch09	3298663	indel	24	19	0.4978	0.3925	0.5417	0.0	-0.5417
SL4.0ch09	3300969	snp	24	15	0.5083	0.4	0.625	0.0	-0.625
SL4.0ch09	3302015	indel	26	24	0.484	0.3654	0.6538	0.1667	-0.4872
SL4.0ch09	3308121	snp	31	40	0.4452	0.3387	0.6129	0.05	-0.5629
SL4.0ch09	3309222	snp	32	23	0.4701	0.3641	0.5625	0.0435	-0.519
SL4.0ch09	3310845	snp	30	21	0.4762	0.3667	0.5	0.0	-0.5
SL4.0ch09	3315428	indel	30	21	0.4762	0.3667	0.5333	0.0	-0.5333
SL4.0ch09	3319373	snp	12	24	0.5417	0.4167	0.75	0.0417	-0.7083
SL4.0ch09	3319971	snp	21	23	0.501	0.3747	0.5714	0.0	-0.5714
SL4.0ch09	3320919	indel	24	22	0.4886	0.375	0.625	0.0909	-0.5341
SL4.0ch09	3321059	snp	22	24	0.4886	0.375	0.5909	0.0833	-0.5076
SL4.0ch09	3322095	snp	8	24	0.5833	0.4583	0.625	0.0	-0.625
SL4.0ch09	3324208	snp	31	30	0.4688	0.3462	0.6774	0.1	-0.5774
SL4.0ch09	3330711	snp	10	29	0.5517	0.4241	0.9	0.0345	-0.8655
SL4.0ch09	3341023	indel	31	27	0.4504	0.3536	0.6129	0.1111	-0.5018
SL4.0ch09	3341472	indel	30	31	0.4688	0.3462	0.6	0.0323	-0.5677
SL4.0ch09	3342936	snp	29	21	0.486	0.3695	0.5862	0.0952	-0.491
SL4.0ch09	3348330	snp	31	20	0.4774	0.3742	0.6452	0.1	-0.5452
SL4.0ch09	3350666	snp	28	24	0.4702	0.369	0.5714	0.0833	-0.4881
SL4.0ch09	3351723	snp	33	21	0.4762	0.3723	0.6061	0.0952	-0.5108
SL4.0ch09	3352382	snp	29	23	0.4888	0.3688	0.5517	0.0	-0.5517
SL4.0ch09	3356538	indel	40	25	0.47	0.355	0.55	0.04	-0.51
SL4.0ch09	3357112	snp	12	24	0.5417	0.4167	0.6667	0.0833	-0.5833
SL4.0ch09	3359263	snp	22	16	0.5114	0.4034	0.6818	0.0	-0.6818
SL4.0ch09	3360589	indel	20	20	0.5	0.4	0.55	0.0	-0.55
SL4.0ch09	3360731	snp	20	25	0.48	0.38	0.6	0.04	-0.56
SL4.0ch09	3363328	snp	13	19	0.5587	0.4291	0.6154	0.0	-0.6154
SL4.0ch09	3364192	snp	23	29	0.4888	0.3688	0.5652	0.0345	-0.5307
SL4.0ch09	3365689	indel	17	13	0.5928	0.4389	0.7059	0.0769	-0.629
SL4.0ch09	3370123	indel	15	22	0.5303	0.4152	0.6667	0.0455	-0.6212
SL4.0ch09	3370166	snp	18	15	0.5333	0.4333	0.6111	0.0667	-0.5444
SL4.0ch09	3370840	snp	20	23	0.4826	0.3783	0.6	0.0435	-0.5565
SL4.0ch09	3371468	snp	19	31	0.4992	0.3735	0.6316	0.0645	-0.5671
SL4.0ch09	3375044	snp	16	21	0.5119	0.4018	0.625	0.0476	-0.5774
SL4.0ch09	3378574	snp	18	14	0.5635	0.4365	0.7222	0.0714	-0.6508
SL4.0ch09	3379589	snp	22	21	0.4913	0.3939	0.6818	0.0476	-0.6342
SL4.0ch09	3381068	snp	14	16	0.5625	0.4196	0.7857	0.0625	-0.7232
SL4.0ch09	3382739	indel	20	19	0.4947	0.3868	0.55	0.0526	-0.4974
SL4.0ch09	3382825	snp	29	16	0.5022	0.3922	0.5172	0.0	-0.5172
SL4.0ch09	3385755	snp	20	17	0.5235	0.4059	0.65	0.0588	-0.5912
SL4.0ch09	3385758	indel	22	18	0.5051	0.3939	0.5909	0.0556	-0.5354
SL4.0ch09	3386614	snp	12	29	0.5374	0.4195	0.6667	0.069	-0.5977
SL4.0ch09	3388268	snp	23	19	0.5195	0.389	0.6087	0.0526	-0.5561
SL4.0ch09	3390027	indel	24	28	0.4702	0.369	0.5417	0.0	-0.5417
SL4.0ch09	3394031	snp	21	22	0.4913	0.3939	0.6667	0.0	-0.6667
SL4.0ch09	3398925	snp	25	29	0.4676	0.3697	0.52	0.0345	-0.4855
SL4.0ch09	3399751	snp	30	25	0.4733	0.36	0.5	0.0	-0.5
SL4.0ch09	3407606	indel	23	34	0.4731	0.3708	0.6087	0.0588	-0.5499
SL4.0ch09	3410539	snp	30	26	0.4641	0.3641	0.5667	0.0769	-0.4897
SL4.0ch09	3419262	snp	15	18	0.5333	0.4333	0.6	0.0	-0.6
SL4.0ch09	3433585	snp	11	22	0.5909	0.4545	0.9091	0.0455	-0.8636
SL4.0ch09	3433620	indel	17	20	0.5235	0.4059	0.7059	0.05	-0.6559
SL4.0ch09	3436112	indel	29	27	0.4649	0.3563	0.5172	0.037	-0.4802
SL4.0ch09	3437931	snp	19	25	0.5095	0.3895	0.5789	0.04	-0.5389
SL4.0ch09	3439695	indel	17	12	0.5637	0.4314	0.6471	0.0833	-0.5637
SL4.0ch09	3447102	snp	24	22	0.4886	0.375	0.5833	0.0455	-0.5379
SL4.0ch09	3449283	indel	25	19	0.5095	0.3895	0.6	0.0526	-0.5474
SL4.0ch09	3449389	snp	27	19	0.4932	0.3821	0.7037	0.1579	-0.5458
SL4.0ch09	3462397	indel	23	23	0.4783	0.3913	0.5652	0.087	-0.4783
SL4.0ch09	3463094	indel	11	19	0.5933	0.4498	0.7273	0.1053	-0.622
SL4.0ch09	3464283	indel	21	16	0.5119	0.4018	0.7143	0.125	-0.5893
SL4.0ch09	3465908	snp	19	24	0.4978	0.3925	0.6316	0.0	-0.6316
SL4.0ch09	3466164	snp	21	21	0.4762	0.381	0.5238	0.0	-0.5238
SL4.0ch09	3471783	snp	29	23	0.4888	0.3688	0.6552	0.1304	-0.5247
SL4.0ch09	3472852	snp	30	19	0.4895	0.3789	0.5667	0.0526	-0.514
SL4.0ch09	3473196	snp	30	17	0.498	0.3824	0.5	0.0	-0.5
SL4.0ch09	3473383	indel	30	19	0.4895	0.3789	0.7	0.0	-0.7
SL4.0ch09	3473385	snp	28	19	0.5038	0.3816	0.6786	0.0	-0.6786
SL4.0ch09	3474568	indel	35	27	0.4603	0.3492	0.5429	0.0	-0.5429
SL4.0ch09	3474618	snp	27	26	0.4715	0.3618	0.5185	0.0385	-0.4801
SL4.0ch09	3486193	snp	17	21	0.5266	0.3978	0.5294	0.0	-0.5294
SL4.0ch09	3492481	indel	15	20	0.5333	0.4167	0.5333	0.0	-0.5333
SL4.0ch09	3492770	snp	19	19	0.5263	0.4211	0.6842	0.1053	-0.5789
SL4.0ch09	3500168	snp	22	22	0.5	0.4091	0.5909	0.0455	-0.5455
SL4.0ch09	3501557	snp	30	28	0.45	0.3476	0.5333	0.0	-0.5333
SL4.0ch09	3502563	snp	27	31	0.4504	0.3536	0.7407	0.0645	-0.6762
SL4.0ch09	3505529	indel	13	14	0.5604	0.4725	0.8462	0.0	-0.8462
SL4.0ch09	3505537	indel	13	15	0.5692	0.4359	0.8462	0.0667	-0.7795
SL4.0ch09	3505856	snp	11	13	0.5874	0.4685	0.7273	0.0	-0.7273
SL4.0ch09	3507118	snp	12	21	0.5476	0.4167	0.6667	0.0952	-0.5714
SL4.0ch09	3508432	indel	17	15	0.5569	0.4314	0.7647	0.2	-0.5647
SL4.0ch09	3512454	snp	26	18	0.4915	0.3803	0.6538	0.1111	-0.5427
SL4.0ch09	3513152	snp	27	16	0.5162	0.3889	0.8148	0.1875	-0.6273
SL4.0ch09	3513275	indel	26	26	0.4615	0.3462	0.7692	0.2308	-0.5385
SL4.0ch09	3513337	snp	39	28	0.4423	0.3397	0.7179	0.2143	-0.5037
SL4.0ch09	3513569	indel	17	17	0.5294	0.4118	0.6471	0.0588	-0.5882
SL4.0ch09	3514314	snp	21	20	0.5119	0.3762	0.6667	0.15	-0.5167
SL4.0ch09	3517655	snp	14	18	0.5635	0.4365	0.7143	0.0556	-0.6587
SL4.0ch09	3518186	snp	26	31	0.4727	0.3648	0.6538	0.129	-0.5248
SL4.0ch09	3519565	snp	20	27	0.4907	0.3796	0.85	0.1481	-0.7019
SL4.0ch09	3520416	snp	8	17	0.6397	0.4706	0.875	0.1176	-0.7574
SL4.0ch09	3521150	indel	27	35	0.4603	0.3492	0.7037	0.2286	-0.4751
SL4.0ch09	3523560	indel	27	17	0.5054	0.3943	0.6296	0.0588	-0.5708
SL4.0ch09	3529787	indel	14	17	0.5378	0.4202	0.7857	0.0588	-0.7269
SL4.0ch09	3533754	snp	24	22	0.4886	0.375	0.7917	0.0909	-0.7008
SL4.0ch09	3534852	snp	32	19	0.477	0.3717	0.6875	0.1579	-0.5296
SL4.0ch09	3536037	snp	24	15	0.5083	0.4	0.7083	0.0667	-0.6417
SL4.0ch09	3541837	indel	18	8	0.5972	0.4722	0.7778	0.125	-0.6528
SL4.0ch09	3542940	snp	8	23	0.5761	0.4837	0.875	0.087	-0.788
SL4.0ch09	3543835	snp	20	25	0.48	0.38	0.7	0.08	-0.62
SL4.0ch09	3547051	indel	20	15	0.5333	0.4167	0.6	0.0667	-0.5333
SL4.0ch09	3547077	indel	23	18	0.5048	0.3986	0.6087	0.0556	-0.5531
SL4.0ch09	3550455	snp	32	26	0.4808	0.363	0.7188	0.2308	-0.488
SL4.0ch09	3550693	snp	27	21	0.4815	0.3704	0.6296	0.1429	-0.4868
SL4.0ch09	3551156	snp	8	29	0.5647	0.4612	0.75	0.0345	-0.7155
SL4.0ch09	3551616	snp	23	24	0.4855	0.3659	0.6522	0.1667	-0.4855
SL4.0ch09	3552263	snp	23	17	0.5192	0.3862	0.6522	0.0588	-0.5934
SL4.0ch09	3553443	snp	21	31	0.4869	0.3625	0.6667	0.1613	-0.5054
SL4.0ch09	3557069	snp	17	17	0.5294	0.4118	0.7059	0.1765	-0.5294
SL4.0ch09	3557151	snp	16	29	0.5022	0.3922	0.625	0.1034	-0.5216
SL4.0ch09	3559425	snp	23	14	0.5248	0.4099	0.8261	0.2143	-0.6118
SL4.0ch09	3561085	indel	10	22	0.5364	0.4364	0.8	0.1364	-0.6636
SL4.0ch09	3563682	indel	22	18	0.5051	0.3939	0.8182	0.1111	-0.7071
SL4.0ch09	3563689	snp	21	16	0.5119	0.4018	0.7619	0.125	-0.6369
SL4.0ch09	3565898	indel	14	17	0.5378	0.4202	0.7857	0.1765	-0.6092
SL4.0ch09	3566662	indel	16	15	0.55	0.425	0.75	0.0667	-0.6833
SL4.0ch09	3568233	snp	13	8	0.6442	0.4904	0.6923	0.0	-0.6923
SL4.0ch09	3568895	snp	16	10	0.5875	0.4625	0.8125	0.2	-0.6125
SL4.0ch09	3569368	snp	26	32	0.4808	0.363	0.5	0.0	-0.5
SL4.0ch09	3571050	indel	14	30	0.5238	0.4143	0.6429	0.1	-0.5429
SL4.0ch09	3571702	indel	17	21	0.5266	0.3978	0.8235	0.2857	-0.5378
SL4.0ch09	3575767	snp	25	26	0.4892	0.3723	0.72	0.1923	-0.5277
SL4.0ch09	3575904	snp	24	13	0.5192	0.4071	0.625	0.0769	-0.5481
SL4.0ch09	3576401	snp	18	18	0.5	0.3889	0.7222	0.1667	-0.5556
SL4.0ch09	3577282	snp	14	25	0.5286	0.4029	0.8571	0.24	-0.6171
SL4.0ch09	3577586	snp	10	20	0.6	0.45	0.7	0.0	-0.7
SL4.0ch09	3577910	snp	11	19	0.5933	0.4498	0.8182	0.0	-0.8182
SL4.0ch09	3579389	indel	28	24	0.4702	0.369	0.6071	0.125	-0.4821
SL4.0ch09	3580321	snp	13	25	0.5292	0.4092	0.7692	0.16	-0.6092
SL4.0ch09	3581276	snp	22	28	0.4773	0.3701	0.7727	0.1786	-0.5942
SL4.0ch09	3581304	indel	22	25	0.4927	0.3836	0.6818	0.16	-0.5218
SL4.0ch09	3583676	snp	16	22	0.5114	0.4034	0.5625	0.0	-0.5625
SL4.0ch09	3585021	snp	17	15	0.5569	0.4314	0.8824	0.1333	-0.749
SL4.0ch09	3585059	indel	22	17	0.5241	0.4011	0.7727	0.1765	-0.5963
SL4.0ch09	3585153	snp	24	19	0.4978	0.3925	0.7083	0.1053	-0.6031
SL4.0ch09	3585604	indel	29	25	0.4676	0.3697	0.6552	0.16	-0.4952
SL4.0ch09	3585779	snp	26	19	0.496	0.3806	0.8077	0.1053	-0.7024
SL4.0ch09	3591024	indel	30	19	0.4895	0.3789	0.7667	0.1579	-0.6088
SL4.0ch09	3592520	snp	25	28	0.4786	0.3586	0.76	0.1071	-0.6529
SL4.0ch09	3593371	snp	29	24	0.4741	0.3621	0.7931	0.2083	-0.5848
SL4.0ch09	3593913	snp	19	30	0.4895	0.3789	0.6316	0.1	-0.5316
SL4.0ch09	3596785	snp	26	27	0.4715	0.3618	0.6538	0.1111	-0.5427
SL4.0ch09	3597000	indel	16	18	0.5278	0.4097	0.75	0.1111	-0.6389
SL4.0ch09	3601488	snp	25	28	0.4786	0.3586	0.68	0.1429	-0.5371
SL4.0ch09	3606446	indel	22	16	0.5114	0.4034	0.6818	0.0625	-0.6193
SL4.0ch09	3606478	snp	20	11	0.5682	0.4364	0.65	0.0	-0.65
SL4.0ch09	3608170	snp	15	18	0.5333	0.4333	0.5333	0.0	-0.5333
SL4.0ch09	3608641	snp	12	32	0.5312	0.4167	0.75	0.1875	-0.5625
SL4.0ch09	3612797	indel	21	21	0.4762	0.381	0.619	0.0952	-0.5238
SL4.0ch09	3614102	snp	20	23	0.4826	0.3783	0.7	0.087	-0.613
SL4.0ch09	3615097	snp	17	23	0.5192	0.3862	0.6471	0.0435	-0.6036
SL4.0ch09	3618008	indel	35	24	0.4643	0.3571	0.6286	0.125	-0.5036
SL4.0ch09	3618010	snp	35	29	0.4552	0.3527	0.5714	0.069	-0.5025
SL4.0ch09	3618353	snp	10	26	0.5846	0.4538	0.8	0.1923	-0.6077
SL4.0ch09	3618412	indel	10	30	0.5667	0.4333	0.8	0.2	-0.6
SL4.0ch09	3618445	snp	16	27	0.5162	0.3889	0.875	0.1481	-0.7269
SL4.0ch09	3619678	snp	17	18	0.5425	0.4248	0.8235	0.2222	-0.6013
SL4.0ch09	3621003	indel	20	24	0.5	0.3833	0.65	0.125	-0.525
SL4.0ch09	3621247	snp	12	19	0.5702	0.4342	0.5833	0.0	-0.5833
SL4.0ch09	3622187	snp	17	18	0.5425	0.4248	0.7647	0.1111	-0.6536
SL4.0ch09	3622638	snp	34	20	0.4735	0.3676	0.7353	0.2	-0.5353
SL4.0ch09	3625123	snp	24	22	0.4886	0.375	0.625	0.0455	-0.5795
SL4.0ch09	3628304	indel	18	17	0.5425	0.4248	0.8333	0.1765	-0.6569
SL4.0ch09	3628357	indel	10	18	0.5889	0.4667	0.8	0.1667	-0.6333
SL4.0ch09	3632312	indel	25	25	0.48	0.36	0.64	0.12	-0.52
SL4.0ch09	3634245	snp	20	17	0.5235	0.4059	0.65	0.1176	-0.5324
SL4.0ch09	3643276	indel	16	17	0.5184	0.4044	0.6875	0.1176	-0.5699
SL4.0ch09	3645744	snp	27	27	0.4444	0.3704	0.6296	0.1852	-0.4444
SL4.0ch09	3645797	indel	29	32	0.4623	0.3459	0.7241	0.1875	-0.5366
SL4.0ch09	3648752	indel	15	21	0.5238	0.4	0.7333	0.1905	-0.5429
SL4.0ch09	3652359	snp	28	20	0.4857	0.3714	0.5	0.0	-0.5
SL4.0ch09	3657604	snp	14	17	0.5378	0.4202	0.6429	0.0588	-0.584
SL4.0ch09	3660606	indel	28	18	0.496	0.3889	0.8214	0.2778	-0.5437
SL4.0ch09	3661452	snp	17	17	0.5294	0.4118	0.7059	0.1765	-0.5294
SL4.0ch09	3661636	snp	22	20	0.5182	0.3864	0.7273	0.1	-0.6273
SL4.0ch09	3664425	snp	28	20	0.4857	0.3714	0.6071	0.1	-0.5071
SL4.0ch09	3665786	indel	28	16	0.5	0.3839	0.5714	0.0625	-0.5089
SL4.0ch09	3668442	indel	21	20	0.5119	0.3762	0.6667	0.15	-0.5167
SL4.0ch09	3669000	indel	24	23	0.4855	0.3659	0.6667	0.087	-0.5797
SL4.0ch09	3670075	snp	11	22	0.5909	0.4545	0.6364	0.0455	-0.5909
SL4.0ch09	3670863	snp	28	20	0.4857	0.3714	0.6071	0.1	-0.5071
SL4.0ch09	3671962	snp	20	11	0.5682	0.4364	0.7	0.0909	-0.6091
SL4.0ch09	3674108	snp	16	16	0.5625	0.4375	0.8125	0.125	-0.6875
SL4.0ch09	3687007	snp	31	22	0.4692	0.371	0.6774	0.1364	-0.5411
SL4.0ch09	3688006	snp	16	19	0.5296	0.4145	0.75	0.0526	-0.6974
SL4.0ch09	3689175	indel	11	13	0.5874	0.4685	0.6364	0.0	-0.6364
SL4.0ch09	3689371	snp	11	9	0.6364	0.5051	0.9091	0.1111	-0.798
SL4.0ch09	3690988	snp	18	23	0.5048	0.3986	0.7222	0.2174	-0.5048
SL4.0ch09	3694084	snp	18	15	0.5333	0.4333	0.6111	0.0	-0.6111
SL4.0ch09	3695350	snp	21	32	0.4658	0.369	0.619	0.125	-0.494
SL4.0ch09	3695708	snp	36	30	0.4389	0.3444	0.6667	0.1667	-0.5
SL4.0ch09	3695887	snp	30	39	0.4436	0.3513	0.8	0.1795	-0.6205
SL4.0ch09	3696020	snp	27	26	0.4715	0.3618	0.8148	0.1538	-0.661
SL4.0ch09	3697277	snp	14	28	0.5	0.3929	0.6429	0.1429	-0.5
SL4.0ch09	3698096	snp	21	25	0.4819	0.3771	0.7619	0.28	-0.4819
SL4.0ch09	3699635	snp	21	21	0.4762	0.381	0.5238	0.0476	-0.4762
SL4.0ch09	3699763	snp	23	21	0.501	0.3747	0.6522	0.0952	-0.5569
SL4.0ch09	3699983	indel	25	19	0.5095	0.3895	0.64	0.0526	-0.5874
SL4.0ch09	3700709	snp	22	16	0.5114	0.4034	0.6364	0.125	-0.5114
SL4.0ch09	3701493	indel	16	19	0.5296	0.4145	0.5625	0.0	-0.5625
SL4.0ch09	3702097	snp	15	28	0.5095	0.381	0.7333	0.1429	-0.5905
SL4.0ch09	3702165	indel	10	28	0.55	0.4429	0.8	0.0714	-0.7286
SL4.0ch09	3702420	snp	15	8	0.6167	0.4833	0.6667	0.0	-0.6667
SL4.0ch09	3703168	snp	19	23	0.5195	0.389	0.7895	0.2609	-0.5286
SL4.0ch09	3708498	snp	32	24	0.4688	0.3646	0.8125	0.2083	-0.6042
SL4.0ch09	3710025	snp	18	17	0.5425	0.4248	0.7778	0.1176	-0.6601
SL4.0ch09	3710918	snp	21	35	0.4762	0.3714	0.6667	0.1143	-0.5524
SL4.0ch09	3715173	indel	20	20	0.5	0.4	0.8	0.3	-0.5
SL4.0ch09	3715694	snp	35	20	0.4714	0.3714	0.7143	0.15	-0.5643
SL4.0ch09	3715895	snp	31	20	0.4774	0.3742	0.8065	0.15	-0.6565
SL4.0ch09	3716261	indel	10	9	0.6778	0.4889	0.9	0.2222	-0.6778
SL4.0ch09	3718960	snp	12	19	0.5702	0.4342	0.6667	0.0526	-0.614
SL4.0ch09	3722836	snp	15	20	0.5333	0.4167	0.5333	0.0	-0.5333
SL4.0ch09	3722944	snp	28	24	0.4702	0.369	0.6786	0.0833	-0.5952
SL4.0ch09	3724795	indel	23	20	0.4826	0.3783	0.6522	0.15	-0.5022
SL4.0ch09	3725109	snp	12	32	0.5312	0.4167	0.75	0.0938	-0.6562
SL4.0ch09	3727595	snp	23	23	0.4783	0.3913	0.6957	0.087	-0.6087
SL4.0ch09	3727710	snp	16	25	0.5325	0.4075	0.6875	0.12	-0.5675
SL4.0ch09	3727876	snp	11	26	0.549	0.4196	0.9091	0.1538	-0.7552
SL4.0ch09	3727915	indel	12	22	0.553	0.4318	0.6667	0.0	-0.6667
SL4.0ch09	3727934	indel	19	26	0.496	0.3806	0.7895	0.1923	-0.5972
SL4.0ch09	3728163	snp	12	19	0.5702	0.4342	0.6667	0.0526	-0.614
SL4.0ch09	3728512	indel	18	20	0.5278	0.4167	0.7222	0.05	-0.6722
SL4.0ch09	3728583	snp	19	21	0.5138	0.3985	0.6842	0.0476	-0.6366
SL4.0ch09	3729568	indel	19	16	0.5296	0.4145	0.6842	0.0625	-0.6217
SL4.0ch09	3729758	indel	18	13	0.547	0.4145	0.8333	0.1538	-0.6795
SL4.0ch09	3729767	snp	16	12	0.5625	0.4375	0.8125	0.0833	-0.7292
SL4.0ch09	3730054	snp	16	22	0.5114	0.4034	0.6875	0.0909	-0.5966
SL4.0ch09	3731209	snp	20	18	0.5278	0.4167	0.6	0.0556	-0.5444
SL4.0ch09	3731729	snp	16	25	0.5325	0.4075	0.8125	0.2	-0.6125
SL4.0ch09	3734031	indel	27	14	0.5265	0.4153	0.7037	0.1429	-0.5608
SL4.0ch09	3736109	indel	25	18	0.5067	0.3867	0.72	0.1667	-0.5533
SL4.0ch09	3739182	snp	16	29	0.5022	0.3922	0.9375	0.2414	-0.6961
SL4.0ch09	3739896	snp	21	21	0.4762	0.381	0.7143	0.2381	-0.4762
SL4.0ch09	3743295	snp	21	20	0.5119	0.3762	0.7143	0.1	-0.6143
SL4.0ch09	3743487	snp	19	18	0.5146	0.4064	0.8421	0.2222	-0.6199
SL4.0ch09	3743581	indel	16	25	0.5325	0.4075	0.75	0.12	-0.63
SL4.0ch09	3744227	snp	14	15	0.581	0.4429	0.7143	0.0667	-0.6476
SL4.0ch09	3744887	snp	17	20	0.5235	0.4059	0.6471	0.05	-0.5971
SL4.0ch09	3748886	snp	23	15	0.5391	0.4087	0.6957	0.1333	-0.5623
SL4.0ch09	3751524	snp	24	24	0.5	0.375	0.7083	0.125	-0.5833
SL4.0ch09	3752243	snp	23	25	0.4991	0.3791	0.6522	0.04	-0.6122
SL4.0ch09	3753940	snp	16	24	0.5208	0.4167	0.625	0.0417	-0.5833
SL4.0ch09	3754159	snp	24	21	0.5	0.3869	0.7083	0.1429	-0.5655
SL4.0ch09	3754566	snp	23	32	0.4701	0.3641	0.6087	0.0312	-0.5774
SL4.0ch09	3754841	snp	14	25	0.5286	0.4029	0.7857	0.16	-0.6257
SL4.0ch09	3754977	snp	9	21	0.5873	0.4603	0.6667	0.0476	-0.619
SL4.0ch09	3759108	snp	27	21	0.4815	0.3704	0.7037	0.1429	-0.5608
SL4.0ch09	3760099	snp	25	17	0.5059	0.3882	0.8	0.1765	-0.6235
SL4.0ch09	3760479	snp	12	29	0.5374	0.4195	0.75	0.1379	-0.6121
SL4.0ch09	3763089	snp	19	28	0.5038	0.3816	0.7895	0.25	-0.5395
SL4.0ch09	3764163	indel	31	21	0.4869	0.3625	0.7097	0.0952	-0.6144
SL4.0ch09	3764592	snp	14	32	0.5045	0.4018	0.5714	0.0625	-0.5089
SL4.0ch09	3766623	snp	21	25	0.4819	0.3771	0.7143	0.16	-0.5543
SL4.0ch09	3768183	snp	24	19	0.4978	0.3925	0.6667	0.0	-0.6667
SL4.0ch09	3769372	snp	19	21	0.5138	0.3985	0.9474	0.2381	-0.7093
SL4.0ch09	3771461	snp	16	22	0.5114	0.4034	0.6875	0.1364	-0.5511
SL4.0ch09	3771638	snp	23	22	0.5079	0.3794	0.6957	0.1818	-0.5138
SL4.0ch09	3772576	snp	30	22	0.4758	0.3697	0.7	0.0455	-0.6545
SL4.0ch09	3772674	snp	35	24	0.4643	0.3571	0.6571	0.0833	-0.5738
SL4.0ch09	3773273	snp	15	25	0.52	0.4	0.7333	0.16	-0.5733
SL4.0ch09	3776426	indel	20	14	0.5357	0.4286	0.75	0.2143	-0.5357
SL4.0ch09	3782499	snp	12	16	0.5625	0.4375	0.6667	0.0	-0.6667
SL4.0ch09	3782513	indel	11	15	0.5758	0.4424	0.7273	0.0667	-0.6606
SL4.0ch09	3782557	indel	18	17	0.5425	0.4248	0.7778	0.1176	-0.6601
SL4.0ch09	3784502	snp	25	34	0.4553	0.3565	0.8	0.1176	-0.6824
SL4.0ch09	3787686	snp	12	23	0.5362	0.4058	0.5833	0.0435	-0.5399
SL4.0ch09	3789235	indel	21	20	0.5119	0.3762	0.619	0.1	-0.519
SL4.0ch09	3793289	snp	13	16	0.5673	0.4423	0.6923	0.0	-0.6923
SL4.0ch09	3794512	indel	20	20	0.5	0.4	0.65	0.05	-0.6
SL4.0ch09	3804829	snp	23	16	0.5136	0.4022	0.6522	0.0	-0.6522
SL4.0ch09	3806525	snp	32	26	0.4808	0.363	0.5625	0.0385	-0.524
SL4.0ch09	3807004	snp	20	11	0.5682	0.4364	0.65	0.0	-0.65
SL4.0ch09	3808300	snp	21	21	0.4762	0.381	0.7619	0.0952	-0.6667
SL4.0ch09	3811037	indel	22	18	0.5051	0.3939	0.6364	0.1111	-0.5253
SL4.0ch09	3811187	snp	22	19	0.5024	0.3876	0.7727	0.2105	-0.5622
SL4.0ch09	3811486	indel	21	18	0.5238	0.3968	0.619	0.0	-0.619
SL4.0ch09	3812109	snp	9	17	0.5948	0.4771	0.6667	0.0588	-0.6078
SL4.0ch09	3813320	snp	13	24	0.5192	0.4071	0.6923	0.0417	-0.6506
SL4.0ch09	3813660	snp	13	13	0.5385	0.4615	0.5385	0.0	-0.5385
SL4.0ch09	3814990	snp	18	16	0.5278	0.4097	0.7778	0.0625	-0.7153
SL4.0ch09	3816472	snp	23	14	0.5248	0.4099	0.7391	0.0714	-0.6677
SL4.0ch09	3824193	indel	8	12	0.625	0.5	0.75	0.0833	-0.6667
SL4.0ch09	3827479	snp	34	18	0.4804	0.366	0.7647	0.2222	-0.5425
SL4.0ch09	3828300	indel	35	19	0.4992	0.385	0.6	0.0526	-0.5474
SL4.0ch09	3837981	snp	14	23	0.5248	0.4099	0.7143	0.087	-0.6273
SL4.0ch09	3838416	snp	26	19	0.496	0.3806	0.6154	0.1053	-0.5101
SL4.0ch09	3839670	snp	24	24	0.5	0.375	0.7917	0.2917	-0.5
SL4.0ch09	3842397	indel	10	9	0.6778	0.4889	0.7	0.0	-0.7
SL4.0ch09	3849551	snp	23	23	0.4783	0.3913	0.6957	0.1739	-0.5217
SL4.0ch09	3851111	snp	32	27	0.4537	0.36	0.75	0.2222	-0.5278
SL4.0ch09	3852329	indel	34	21	0.486	0.3613	0.6765	0.1429	-0.5336
SL4.0ch09	3852378	snp	28	26	0.4808	0.3654	0.6786	0.1923	-0.4863
SL4.0ch09	3854592	snp	14	21	0.5238	0.4048	0.5714	0.0	-0.5714
SL4.0ch09	3854726	snp	15	24	0.5083	0.4	0.6667	0.0	-0.6667
SL4.0ch09	3854820	indel	21	21	0.4762	0.381	0.5714	0.0952	-0.4762
SL4.0ch09	3859176	snp	10	20	0.6	0.45	0.7	0.05	-0.65
SL4.0ch09	3859296	snp	17	22	0.5241	0.4011	0.8824	0.1818	-0.7005
SL4.0ch09	3860917	snp	26	20	0.4923	0.3808	0.7308	0.2	-0.5308
SL4.0ch09	3867582	snp	21	20	0.5119	0.3762	0.7143	0.15	-0.5643
SL4.0ch09	3869413	snp	35	13	0.5033	0.3978	0.7143	0.1538	-0.5604
SL4.0ch09	3870602	snp	23	25	0.4991	0.3791	0.7826	0.16	-0.6226
SL4.0ch09	3878354	snp	21	21	0.4762	0.381	0.6667	0.0	-0.6667
SL4.0ch09	3878780	indel	20	20	0.5	0.4	0.8	0.15	-0.65
SL4.0ch09	3902438	indel	20	21	0.5119	0.3762	0.85	0.3333	-0.5167
SL4.0ch09	3906337	snp	28	28	0.4643	0.3571	0.75	0.25	-0.5
SL4.0ch09	3907606	snp	25	33	0.457	0.3479	0.8	0.2424	-0.5576
SL4.0ch09	3915365	snp	10	21	0.5667	0.4238	0.7	0.0952	-0.6048
SL4.0ch09	3916163	snp	18	18	0.5	0.3889	0.7222	0.1667	-0.5556
SL4.0ch09	3920716	indel	9	18	0.6111	0.4444	0.8889	0.1667	-0.7222
SL4.0ch09	3922637	snp	13	24	0.5192	0.4071	0.6154	0.0417	-0.5737
SL4.0ch09	3929190	snp	13	11	0.5874	0.4685	0.9231	0.1818	-0.7413
SL4.0ch09	3932414	snp	19	18	0.5146	0.4064	0.7895	0.1667	-0.6228
SL4.0ch09	3933713	snp	12	19	0.5702	0.4342	0.5833	0.0	-0.5833
SL4.0ch09	3937988	indel	11	14	0.6039	0.461	0.7273	0.0714	-0.6558
SL4.0ch09	3938278	snp	22	20	0.5182	0.3864	0.6364	0.1	-0.5364
SL4.0ch09	3938288	indel	25	20	0.48	0.38	0.6	0.1	-0.5
SL4.0ch09	3939712	indel	18	20	0.5278	0.4167	0.5556	0.0	-0.5556
SL4.0ch09	3942620	snp	26	34	0.4661	0.3597	0.8462	0.2647	-0.5814
SL4.0ch09	3943098	snp	32	17	0.4871	0.386	0.625	0.0588	-0.5662
SL4.0ch09	3948426	snp	16	13	0.5673	0.4423	0.625	0.0	-0.625
SL4.0ch09	3949655	snp	15	23	0.5391	0.4087	0.7333	0.1739	-0.5594
SL4.0ch09	3953253	snp	23	20	0.4826	0.3783	0.7826	0.25	-0.5326
SL4.0ch09	3954633	snp	10	14	0.6143	0.4714	0.8	0.1429	-0.6571
SL4.0ch09	3957387	snp	21	27	0.4815	0.3704	0.7143	0.1852	-0.5291
SL4.0ch09	3958635	indel	33	17	0.492	0.3725	0.8788	0.1176	-0.7611
SL4.0ch09	3960531	snp	19	19	0.5263	0.4211	0.6316	0.1053	-0.5263
SL4.0ch09	3960783	snp	15	16	0.55	0.425	0.8	0.1875	-0.6125
SL4.0ch09	3961599	indel	17	20	0.5235	0.4059	0.5294	0.0	-0.5294
SL4.0ch09	3961759	snp	17	30	0.498	0.3824	0.7059	0.1333	-0.5725
SL4.0ch09	3967981	snp	20	20	0.5	0.4	0.6	0.05	-0.55
SL4.0ch09	3968023	indel	15	21	0.5238	0.4	0.6	0.0	-0.6
SL4.0ch09	3970622	indel	20	18	0.5278	0.4167	0.7	0.1667	-0.5333
SL4.0ch09	3970665	indel	27	24	0.4907	0.3657	0.7037	0.2083	-0.4954
SL4.0ch09	3971949	snp	22	16	0.5114	0.4034	0.7273	0.125	-0.6023
SL4.0ch09	3973253	snp	19	12	0.5702	0.4342	0.6842	0.0833	-0.6009
SL4.0ch09	3974337	snp	34	20	0.4735	0.3676	0.6471	0.1	-0.5471
SL4.0ch09	3977894	snp	17	19	0.5139	0.3963	0.7059	0.1579	-0.548
SL4.0ch09	3978944	snp	17	20	0.5235	0.4059	0.7647	0.1	-0.6647
SL4.0ch09	3980556	snp	14	29	0.5443	0.4064	0.7857	0.2414	-0.5443
SL4.0ch09	3987553	snp	23	25	0.4991	0.3791	0.6087	0.0	-0.6087
SL4.0ch09	3987574	indel	23	31	0.4811	0.3731	0.6522	0.0323	-0.6199
SL4.0ch09	3992284	snp	27	29	0.4649	0.3563	0.6667	0.1379	-0.5287
SL4.0ch09	3992458	snp	29	31	0.4616	0.3626	0.5517	0.0645	-0.4872
SL4.0ch09	3995158	snp	33	26	0.4662	0.3508	0.6364	0.1538	-0.4825
SL4.0ch09	3996869	snp	10	10	0.6	0.5	0.6	0.0	-0.6
SL4.0ch09	4004053	snp	28	31	0.4528	0.356	0.6786	0.0645	-0.6141
SL4.0ch09	4004184	snp	17	33	0.492	0.3725	0.5882	0.0909	-0.4973
SL4.0ch09	4004832	snp	18	27	0.5	0.3889	0.6667	0.1111	-0.5556
SL4.0ch09	4006877	snp	27	16	0.5162	0.3889	0.7778	0.0625	-0.7153
SL4.0ch09	4011858	snp	21	24	0.5	0.3869	0.8571	0.2083	-0.6488
SL4.0ch09	4017338	indel	17	26	0.5136	0.3824	0.8824	0.1923	-0.69
SL4.0ch09	4018133	indel	19	17	0.5139	0.3963	0.8947	0.2941	-0.6006
SL4.0ch09	4018147	snp	17	16	0.5184	0.4044	0.8824	0.3125	-0.5699
SL4.0ch09	4019657	snp	19	15	0.5228	0.414	0.7895	0.2667	-0.5228
SL4.0ch09	4020402	snp	20	20	0.5	0.4	0.8	0.2	-0.6
SL4.0ch09	4021009	indel	20	10	0.6	0.45	0.7	0.1	-0.6
SL4.0ch09	4021121	indel	14	20	0.5357	0.4286	0.7143	0.1	-0.6143
SL4.0ch09	4021191	indel	21	20	0.5119	0.3762	0.8095	0.2	-0.6095
SL4.0ch09	4027377	snp	27	23	0.4734	0.3688	0.5185	0.0435	-0.475
SL4.0ch09	4031737	snp	23	15	0.5391	0.4087	0.7826	0.0667	-0.7159
SL4.0ch09	4034554	snp	17	17	0.5294	0.4118	0.7059	0.0588	-0.6471
SL4.0ch09	4034638	snp	22	12	0.553	0.4318	0.6364	0.0833	-0.553
SL4.0ch09	4036137	snp	12	16	0.5625	0.4375	0.75	0.1875	-0.5625
SL4.0ch09	4038030	snp	20	19	0.4947	0.3868	0.6	0.1053	-0.4947
SL4.0ch09	4040772	indel	26	21	0.5018	0.3791	0.5769	0.0476	-0.5293
SL4.0ch09	4045618	indel	38	23	0.4588	0.3627	0.6579	0.1304	-0.5275
SL4.0ch09	4045763	snp	23	22	0.5079	0.3794	0.7391	0.2273	-0.5119
SL4.0ch09	4055439	snp	18	9	0.6111	0.4444	0.7222	0.1111	-0.6111
SL4.0ch09	4061640	snp	24	22	0.4886	0.375	0.625	0.0909	-0.5341
SL4.0ch09	4064189	snp	14	18	0.5635	0.4365	0.5714	0.0	-0.5714
SL4.0ch09	4072114	snp	37	18	0.4805	0.3724	0.7838	0.2222	-0.5616
SL4.0ch09	4074891	indel	17	23	0.5192	0.3862	0.7059	0.1739	-0.532
SL4.0ch09	4074932	snp	14	26	0.5165	0.4011	0.7857	0.1154	-0.6703
SL4.0ch09	4075178	snp	12	25	0.55	0.4267	0.75	0.16	-0.59
SL4.0ch09	4076091	snp	17	11	0.5829	0.4385	0.8235	0.0909	-0.7326
SL4.0ch09	4092133	snp	18	19	0.5146	0.4064	0.7778	0.1053	-0.6725
SL4.0ch09	4096006	snp	23	13	0.5284	0.4114	0.6522	0.0769	-0.5753
SL4.0ch09	4096268	snp	25	17	0.5059	0.3882	0.72	0.0588	-0.6612
SL4.0ch09	4099489	snp	23	21	0.501	0.3747	0.6522	0.1429	-0.5093
SL4.0ch09	4104653	snp	33	24	0.4659	0.3636	0.6061	0.125	-0.4811
SL4.0ch09	4105963	snp	25	21	0.4819	0.3771	0.72	0.1905	-0.5295
SL4.0ch09	4108703	snp	13	31	0.5236	0.4069	0.9231	0.1613	-0.7618
SL4.0ch09	4110354	indel	16	20	0.55	0.4125	0.6875	0.05	-0.6375
SL4.0ch09	4112602	snp	21	15	0.5238	0.4	0.7143	0.0667	-0.6476
SL4.0ch09	4125443	snp	28	19	0.5038	0.3816	0.6786	0.0526	-0.6259
SL4.0ch09	4125461	indel	31	24	0.4691	0.3629	0.7097	0.0417	-0.668
SL4.0ch09	4126041	snp	25	19	0.5095	0.3895	0.68	0.1579	-0.5221
SL4.0ch09	4127319	snp	19	27	0.4932	0.3821	0.6842	0.1481	-0.5361
SL4.0ch09	4131082	indel	19	14	0.5414	0.4173	0.8421	0.0714	-0.7707
SL4.0ch09	4131135	snp	14	23	0.5248	0.4099	0.8571	0.1304	-0.7267
SL4.0ch09	4133928	snp	23	21	0.501	0.3747	0.6522	0.1429	-0.5093
SL4.0ch09	4141821	snp	29	34	0.4503	0.3469	0.5862	0.1176	-0.4686
SL4.0ch09	4142946	snp	18	23	0.5048	0.3986	0.7222	0.2174	-0.5048
SL4.0ch09	4144011	snp	18	15	0.5333	0.4333	0.7222	0.0667	-0.6556
SL4.0ch09	4147679	snp	12	8	0.625	0.5	0.75	0.0	-0.75
SL4.0ch09	4149362	snp	20	26	0.4923	0.3808	0.7	0.1923	-0.5077
SL4.0ch09	4149447	snp	13	23	0.5284	0.4114	0.7692	0.1304	-0.6388
SL4.0ch09	4151850	snp	12	20	0.55	0.4333	0.8333	0.15	-0.6833
SL4.0ch09	4151913	snp	8	13	0.6442	0.4904	0.75	0.0769	-0.6731
SL4.0ch09	4156196	snp	17	24	0.4975	0.3873	0.8235	0.1667	-0.6569
SL4.0ch09	4156485	indel	33	33	0.4545	0.3333	0.6667	0.2121	-0.4545
SL4.0ch09	4157768	indel	8	20	0.625	0.475	0.625	0.0	-0.625
SL4.0ch09	4159609	snp	14	16	0.5625	0.4196	0.6429	0.0625	-0.5804
SL4.0ch09	4160567	snp	30	19	0.4895	0.3789	0.6	0.0	-0.6
SL4.0ch09	4163180	snp	23	24	0.4855	0.3659	0.6087	0.0833	-0.5254
SL4.0ch09	4163309	indel	22	17	0.5241	0.4011	0.6364	0.0588	-0.5775
SL4.0ch09	4163322	snp	23	20	0.4826	0.3783	0.6957	0.15	-0.5457
SL4.0ch09	9086272	snp	32	16	0.5	0.375	0.125	0.625	0.5
SL4.0ch09	53261335	indel	9	17	0.5948	0.4771	1.0	0.1176	-0.8824
SL4.0ch09	64531960	snp	16	27	0.5162	0.3889	0.625	0.037	-0.588
SL4.0ch10	12340354	snp	19	22	0.5024	0.3876	0.2105	0.7727	0.5622
SL4.0ch10	18223174	indel	12	13	0.5962	0.4423	1.0	0.0	-1.0
SL4.0ch10	20731088	snp	8	13	0.6442	0.4904	0.25	0.9231	0.6731
SL4.0ch10	27983597	snp	14	23	0.5248	0.4099	0.2143	0.7391	0.5248
SL4.0ch10	34786771	snp	25	18	0.5067	0.3867	0.28	0.8333	0.5533
SL4.0ch10	60783612	indel	16	17	0.5184	0.4044	1.0	0.1176	-0.8824
SL4.0ch11	17645104	indel	26	19	0.496	0.3806	0.6538	0.0	-0.6538
SL4.0ch11	50535984	indel	19	13	0.5587	0.4291	0.9474	0.0	-0.9474
SL4.0ch12	49511130	indel	18	19	0.5146	0.4064	1.0	0.0526	-0.9474
SL4.0ch12	59619035	indel	17	24	0.4975	0.3873	0.9412	0.0	-0.9412
SL4.0ch12	63986259	indel	19	13	0.5587	0.4291	0.9474	0.0	-0.9474