FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.EVE_totivirus.15-35nt.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.EVE_totivirus.15-35nt.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length15-20
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTAACGGCCTGCCCA545.45454545454545No Hit
GTTTAACGGCCTGCCC218.181818181818183No Hit
TTAACGGCCTGCCCA19.090909090909092No Hit
TTTAACGGCCTGCCCA19.090909090909092No Hit
CGCGTCCCTGTCAAA19.090909090909092No Hit
AATCCGCCGATCCGTCCAAC19.090909090909092No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)