##FastQC	0.11.9
>>Basic Statistics	pass
#Measure	Value
Filename	S1_Sudafrica.EVE_totivirus.15-35nt.new.reverse-mapped.fq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21
Sequences flagged as poor quality	0
Sequence length	27-34
%GC	50
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	37.0	NaN	NaN	NaN	NaN	NaN
2	37.0	NaN	NaN	NaN	NaN	NaN
3	36.42857142857143	NaN	NaN	NaN	NaN	NaN
4	36.42857142857143	NaN	NaN	NaN	NaN	NaN
5	37.0	NaN	NaN	NaN	NaN	NaN
6	35.285714285714285	NaN	NaN	NaN	NaN	NaN
7	37.0	NaN	NaN	NaN	NaN	NaN
8	34.523809523809526	NaN	NaN	NaN	NaN	NaN
9	37.0	NaN	NaN	NaN	NaN	NaN
10	37.0	NaN	NaN	NaN	NaN	NaN
11	36.42857142857143	NaN	NaN	NaN	NaN	NaN
12	34.61904761904762	NaN	NaN	NaN	NaN	NaN
13	37.0	NaN	NaN	NaN	NaN	NaN
14	36.42857142857143	NaN	NaN	NaN	NaN	NaN
15	37.0	NaN	NaN	NaN	NaN	NaN
16	37.0	NaN	NaN	NaN	NaN	NaN
17	37.0	NaN	NaN	NaN	NaN	NaN
18	37.0	NaN	NaN	NaN	NaN	NaN
19	37.0	NaN	NaN	NaN	NaN	NaN
20	36.42857142857143	NaN	NaN	NaN	NaN	NaN
21	37.0	NaN	NaN	NaN	NaN	NaN
22	37.0	NaN	NaN	NaN	NaN	NaN
23	37.0	NaN	NaN	NaN	NaN	NaN
24	37.0	NaN	NaN	NaN	NaN	NaN
25	37.0	NaN	NaN	NaN	NaN	NaN
26	37.0	NaN	NaN	NaN	NaN	NaN
27	37.0	NaN	NaN	NaN	NaN	NaN
28	37.0	NaN	NaN	NaN	NaN	NaN
29	36.294117647058826	NaN	NaN	NaN	NaN	NaN
30	35.470588235294116	NaN	NaN	NaN	NaN	NaN
31	37.0	NaN	NaN	NaN	NaN	NaN
32	37.0	NaN	NaN	NaN	NaN	NaN
33	37.0	NaN	NaN	NaN	NaN	NaN
34	37.0	NaN	NaN	NaN	NaN	NaN
>>END_MODULE
>>Per tile sequence quality	fail
#Tile	Base	Mean
2172	1	0.0
2172	2	0.0
2172	3	0.0
2172	4	0.0
2172	5	0.0
2172	6	0.0
2172	7	0.0
2172	8	-13.0
2172	9	0.0
2172	10	0.0
2172	11	0.0
2172	12	0.0
2172	13	0.0
2172	14	0.0
2172	15	0.0
2172	16	0.0
2172	17	0.0
2172	18	0.0
2172	19	0.0
2172	20	0.0
2172	21	0.0
2172	22	0.0
2172	23	0.0
2172	24	0.0
2172	25	0.0
2172	26	0.0
2172	27	0.0
2172	28	18.5
2172	29	18.5
2172	30	18.5
2238	1	0.0
2238	2	0.0
2238	3	0.0
2238	4	0.0
2238	5	0.0
2238	6	0.0
2238	7	0.0
2238	8	13.0
2238	9	0.0
2238	10	0.0
2238	11	0.0
2238	12	0.0
2238	13	0.0
2238	14	0.0
2238	15	0.0
2238	16	0.0
2238	17	0.0
2238	18	0.0
2238	19	0.0
2238	20	0.0
2238	21	0.0
2238	22	0.0
2238	23	0.0
2238	24	0.0
2238	25	0.0
2238	26	0.0
2238	27	0.0
2238	28	-18.5
2238	29	-18.5
2238	30	-18.5
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
35	1.0
36	9.0
37	11.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	4.761904761904762	19.047619047619047	0.0	76.19047619047619
2	4.761904761904762	38.095238095238095	57.14285714285714	0.0
3	38.095238095238095	4.761904761904762	19.047619047619047	38.095238095238095
4	57.14285714285714	4.761904761904762	38.095238095238095	0.0
5	38.095238095238095	38.095238095238095	0.0	23.809523809523807
6	38.095238095238095	61.904761904761905	0.0	0.0
7	19.047619047619047	42.857142857142854	0.0	38.095238095238095
8	19.047619047619047	80.95238095238095	0.0	0.0
9	4.761904761904762	38.095238095238095	0.0	57.14285714285714
10	0.0	100.0	0.0	0.0
11	38.095238095238095	61.904761904761905	0.0	0.0
12	0.0	100.0	0.0	0.0
13	57.14285714285714	38.095238095238095	0.0	4.761904761904762
14	0.0	76.19047619047619	0.0	23.809523809523807
15	0.0	38.095238095238095	19.047619047619047	42.857142857142854
16	4.761904761904762	38.095238095238095	0.0	57.14285714285714
17	0.0	0.0	0.0	100.0
18	38.095238095238095	23.809523809523807	0.0	38.095238095238095
19	0.0	0.0	0.0	100.0
20	38.095238095238095	38.095238095238095	0.0	23.809523809523807
21	0.0	4.761904761904762	0.0	95.23809523809523
22	19.047619047619047	38.095238095238095	0.0	42.857142857142854
23	0.0	57.14285714285714	4.761904761904762	38.095238095238095
24	0.0	0.0	19.047619047619047	80.95238095238095
25	19.047619047619047	38.095238095238095	38.095238095238095	4.761904761904762
26	0.0	0.0	23.809523809523807	76.19047619047619
27	0.0	52.38095238095239	4.761904761904762	42.857142857142854
28	5.88235294117647	47.05882352941176	47.05882352941176	0.0
29	0.0	52.94117647058824	0.0	47.05882352941176
30	52.94117647058824	47.05882352941176	0.0	0.0
31	0.0	100.0	0.0	0.0
32	80.0	20.0	0.0	0.0
33	0.0	100.0	0.0	0.0
34	0.0	100.0	0.0	0.0
>>END_MODULE
>>Per sequence GC content	fail
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0
20	0.0
21	0.0
22	0.0
23	0.0
24	0.0
25	0.0
26	0.0
27	0.0
28	0.0
29	0.0
30	0.0
31	0.0
32	0.0
33	0.0
34	0.0
35	0.0
36	0.0
37	0.0
38	0.0
39	0.0
40	0.0
41	0.0
42	0.5
43	1.0
44	1.0
45	4.0
46	7.0
47	7.0
48	3.5
49	0.0
50	2.0
51	8.0
52	12.5
53	13.0
54	7.0
55	0.5
56	0.0
57	0.0
58	0.0
59	0.0
60	0.0
61	0.0
62	0.0
63	0.0
64	0.0
65	0.0
66	0.0
67	0.0
68	0.0
69	0.0
70	0.0
71	0.0
72	0.0
73	0.0
74	0.0
75	0.0
76	0.0
77	0.0
78	0.0
79	0.0
80	0.0
81	0.0
82	0.0
83	0.0
84	0.0
85	0.0
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0
20	0.0
21	0.0
22	0.0
23	0.0
24	0.0
25	0.0
26	0.0
27	0.0
28	0.0
29	0.0
30	0.0
31	0.0
32	0.0
33	0.0
34	0.0
>>END_MODULE
>>Sequence Length Distribution	warn
#Length	Count
27	4.0
28	0.0
29	0.0
30	7.0
31	0.0
32	2.0
33	0.0
34	8.0
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Deduplicated Percentage	23.809523809523807
#Duplication Level	Percentage of deduplicated	Percentage of total
1	40.0	9.523809523809524
2	0.0	0.0
3	0.0	0.0
4	20.0	19.047619047619047
5	0.0	0.0
6	0.0	0.0
7	20.0	33.33333333333333
8	20.0	38.095238095238095
9	0.0	0.0
>10	0.0	0.0
>50	0.0	0.0
>100	0.0	0.0
>500	0.0	0.0
>1k	0.0	0.0
>5k	0.0	0.0
>10k+	0.0	0.0
>>END_MODULE
>>Overrepresented sequences	fail
#Sequence	Count	Percentage	Possible Source
CTGGAACAAAGAAACCCGCACCACTCCTCGAGAA	8	38.095238095238095	No Hit
CACTGGAACAAAGAAACCCGCACCACAAAA	7	33.33333333333333	No Hit
ATTGCAGGCAAAGCTCCACCCGATGTA	4	19.047619047619047	No Hit
CACTGGAACAAAGAAACCCGCACCACTAAAAA	1	4.761904761904762	No Hit
GGAACAAAGAAACCCGCACCACTCCTCGAGAA	1	4.761904761904762	No Hit
>>END_MODULE
>>Adapter Content	pass
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
1	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.0
4	0.0	0.0	0.0	0.0	0.0
5	0.0	0.0	0.0	0.0	0.0
6	0.0	0.0	0.0	0.0	0.0
7	0.0	0.0	0.0	0.0	0.0
8	0.0	0.0	0.0	0.0	0.0
9	0.0	0.0	0.0	0.0	0.0
10	0.0	0.0	0.0	0.0	0.0
11	0.0	0.0	0.0	0.0	0.0
12	0.0	0.0	0.0	0.0	0.0
13	0.0	0.0	0.0	0.0	0.0
14	0.0	0.0	0.0	0.0	0.0
15	0.0	0.0	0.0	0.0	0.0
16	0.0	0.0	0.0	0.0	0.0
17	0.0	0.0	0.0	0.0	0.0
18	0.0	0.0	0.0	0.0	0.0
19	0.0	0.0	0.0	0.0	0.0
20	0.0	0.0	0.0	0.0	0.0
21	0.0	0.0	0.0	0.0	0.0
22	0.0	0.0	0.0	0.0	0.0
23	0.0	0.0	0.0	0.0	0.0
>>END_MODULE
