FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.EVE_totivirus.15-35nt.new.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.EVE_totivirus.15-35nt.new.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21
Sequences flagged as poor quality0
Sequence length27-34
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAACAAAGAAACCCGCACCACTCCTCGAGAA838.095238095238095No Hit
CACTGGAACAAAGAAACCCGCACCACAAAA733.33333333333333No Hit
ATTGCAGGCAAAGCTCCACCCGATGTA419.047619047619047No Hit
CACTGGAACAAAGAAACCCGCACCACTAAAAA14.761904761904762No Hit
GGAACAAAGAAACCCGCACCACTCCTCGAGAA14.761904761904762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)