FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Flavivirus.15-35nt.new.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Flavivirus.15-35nt.new.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295
Sequences flagged as poor quality0
Sequence length20-35
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGACTGCTGCCCACCCA103.389830508474576No Hit
AGGTGGCTCCTTAAACATCAGTAATTCTGCGCAA103.389830508474576No Hit
TTTCTCATTGAACATAGGCGTCCCAGATATTAGGT93.050847457627119No Hit
ACTCAAGTGAATTTTCTAATGATCGGCTATA82.711864406779661No Hit
TAATAGTCCTTGTAGCTCGAAGTCACTAACCT62.0338983050847457No Hit
ATTCCTTATCTGCACCAGGAATCAGGTTACA62.0338983050847457No Hit
ACGTATAACTCACGTATCTCTTGACACAACCATT51.694915254237288No Hit
AGCACTAGAAACTGAAAGTAAACACCATCAAAA51.694915254237288No Hit
GGTGATAGCATTGGCTCCTGTACTGGCACT41.3559322033898304No Hit
ACTACGCAATCGGCTGTCACCA41.3559322033898304No Hit
GTATCTTTTACCCAGCTCTTATAAA41.3559322033898304No Hit
CCAACACATCCGAGCGAGCCCCA41.3559322033898304No Hit
CCACTATATGAACAAACTGAGTACTTGGCACCGCT41.3559322033898304No Hit
CCTTTCTCATTGAACATAGGCGTCCCAGATAT41.3559322033898304No Hit
CATCATCTCAACGACAGCAACCTGGGCCTTCA41.3559322033898304No Hit
CGATCACGAACCGCAAAATTATCAATGGCACC41.3559322033898304No Hit
TCCACTCGAGACCTCATAATC41.3559322033898304No Hit
GGAAGCACTAGAAACTGAAACC31.0169491525423728No Hit
CTGGTAACGTATGATGACATC31.0169491525423728No Hit
TGCAATGAACCCGAATAACCC31.0169491525423728No Hit
TGAGAACCCAGGCTGCTCCGA31.0169491525423728No Hit
GCAGTTGCTATTACCATTATAAAAAAAC31.0169491525423728No Hit
CCGAGCTCAACAGTCAATTTGGAGT31.0169491525423728No Hit
CCCATTTGACAGTAGCGGCGCCA31.0169491525423728No Hit
GAAACTGTAAGCCGCAACGAG31.0169491525423728No Hit
ACAGCGAGACCGATATAACCATTACCTA31.0169491525423728No Hit
TGAACAAACTGAGTACTTGGC31.0169491525423728No Hit
CGACAATAACGACGTATGCCACC31.0169491525423728No Hit
CTGAGGCGCCAGTTTTGATCTTATCGA31.0169491525423728No Hit
ACCTCGACTGCCAACATTAC20.6779661016949152No Hit
CCGCGACTGCTGCCCACCCAC20.6779661016949152No Hit
ATGAGCACCTGTATACCGGTA20.6779661016949152No Hit
TATCCTAACATCTTCGCCTGC20.6779661016949152No Hit
TATGCAAGCCCACCGGACCCA20.6779661016949152No Hit
CGGCGCTTAAGATGAACAGAG20.6779661016949152No Hit
GATATCCAATTATGACGCCCT20.6779661016949152No Hit
TCCACTCGAGACCTCATAATCA20.6779661016949152No Hit
AAGATTGAACCTGGAGAAGCCC20.6779661016949152No Hit
TCAGTAGTTCTAGCCATGGTA20.6779661016949152No Hit
TCCATGTAATTGAAGGCCGGC20.6779661016949152No Hit
CAGCAACTCCGCCGATCGCACCA20.6779661016949152No Hit
TGTAATTGAAGGCCGGCACAC20.6779661016949152No Hit
TAATATCAGGCTGCCCAAAAC20.6779661016949152No Hit
TTTGAATGTTTGTTGGGTACC20.6779661016949152No Hit
AGTAGCAGGCCAAATATTAAG20.6779661016949152No Hit
AAGATTGAACCTGGAGAAGCC20.6779661016949152No Hit
GTCCATGAGTCACCTCTGTAAGTCAA20.6779661016949152No Hit
AGCGGAAAACTCGCCTGGCGTC20.6779661016949152No Hit
CAAGCCCACCGGACCCAGCGC20.6779661016949152No Hit
TGGGGCCCGCGATAATGACG20.6779661016949152No Hit
TTAAAATTCCACTCGAGACCT20.6779661016949152No Hit
TTGTTGTATGTTTTATCGCCCCTTCACGT20.6779661016949152No Hit
CATGAAGCTGGCAGCGAGAGC20.6779661016949152No Hit
GTATGACTCGGAGTGTTTCCA20.6779661016949152No Hit
GACAATTGGCCTGTAAGTCAT20.6779661016949152No Hit
ACAGGACGAGAACAAGGTTGA20.6779661016949152No Hit
TACAGGACGAGAACAAGGTTGATG20.6779661016949152No Hit
TATGGCACGTATACTATCAAA20.6779661016949152No Hit
TGTTAGGGACATCTGATGAGAA20.6779661016949152No Hit
ATAGCATTGGCTCCTGTACTG20.6779661016949152No Hit
AACAAACTGAGTACTTGGCAC20.6779661016949152No Hit
TGTCCCATGCTCTCCTCCATCAGT20.6779661016949152No Hit
TTGTGCAATGAACCCGAATAA20.6779661016949152No Hit
CAATGAACCCGAATAACCCA10.3389830508474576No Hit
TTGCCTTAGCACCTCGACTGC10.3389830508474576No Hit
CAACAACGCATGGCACTTCTC10.3389830508474576No Hit
CGTTTTCCTGATAACTTAAATTGAA10.3389830508474576No Hit
GTTTGGAACAGGCGCTCGGTC10.3389830508474576No Hit
CAGCGCGGCAGACATGGCACCATCAGAAATATAA10.3389830508474576No Hit
ATTGAACAGTAGGTGCCTTG10.3389830508474576No Hit
ACTACGCAATCGGCTGTCACC10.3389830508474576No Hit
AAACTGAGTACTTGGCACCGC10.3389830508474576No Hit
CTCTTTTATTGGCGCTGGGAA10.3389830508474576No Hit
CTCAATACTGTTGACATCACC10.3389830508474576No Hit
ACGACGTATGCCACCAGAGAC10.3389830508474576No Hit
GACAGTAGCGGCGCTTAAGATGAA10.3389830508474576No Hit
TTTCCTTAGCACCTCGACTGC10.3389830508474576No Hit
TAATAAACCGGACGTACTTCC10.3389830508474576No Hit
TATTGATTTCATGGCCCCTGC10.3389830508474576No Hit
TGACCGATGCGAGTGAGAGCG10.3389830508474576No Hit
ACCAGTCCGGAAATTCATCAAA10.3389830508474576No Hit
CCTTTCTTAACTTTCCATCTG10.3389830508474576No Hit
AGGACGAGAACAAGGTTGATGCA10.3389830508474576No Hit
CGCCGAAGATAGTTGTACCGC10.3389830508474576No Hit
CGACTGCTGCCCACCCACTTG10.3389830508474576No Hit
CGATTCTCAACTTCTCGCCCA10.3389830508474576No Hit
CACCACTCATTGAGCCCAGAA10.3389830508474576No Hit
CATCCAATCAGGTTTCCACTC10.3389830508474576No Hit
TCCGGAAATTCATCAATGAAC10.3389830508474576No Hit
TTGGTAGCCTCTTCATTTTCC10.3389830508474576No Hit
TCAATGAGCACCTGTATACCG10.3389830508474576No Hit
AATTATGACGCCCTGCACTTC10.3389830508474576No Hit
CGTCCAAAACGAAGCCATCCAC10.3389830508474576No Hit
TCCGCCGATCGCACTCAACACC10.3389830508474576No Hit
GTTCCCGCGATTAATTCTTCCTG10.3389830508474576No Hit
TGAGGCTCCTGATGTACTGAC10.3389830508474576No Hit
CAGTAGTTCTAGCCATGGTATCCA10.3389830508474576No Hit
CTGCCCAAAACTATCATATGACC10.3389830508474576No Hit
ATTAACCACCCATTTGACAG10.3389830508474576No Hit
GCAATGAACCCGAATAACCCA10.3389830508474576No Hit
TCATTGAACATAGGCGTCCCA10.3389830508474576No Hit
ACCAAGTAACAGAGCCAATTG10.3389830508474576No Hit
TACCGAAATCGACCACTAGAC10.3389830508474576No Hit
CCAATTATGACGCCCTGCACTA10.3389830508474576No Hit
TCAACCGAAACACCAGCCATG10.3389830508474576No Hit
ACCATAACGAAGTTGCTAGCAC10.3389830508474576No Hit
CACACCGGGGACAGTGATAGC10.3389830508474576No Hit
CAATTCCACCTATGGCACCTC10.3389830508474576No Hit
GCGACTCCAACACATCCGAG10.3389830508474576No Hit
ACCCGTTGGAAGTCCCTGCTC10.3389830508474576No Hit
CAACCTACCCCGTTCTATGCG10.3389830508474576No Hit
AAACTGTAAGCCGCAACGAGC10.3389830508474576No Hit
CGTTAAGTAGGTTCCCGCGCAC10.3389830508474576No Hit
CGTGTAACTCATACCTGGTAT10.3389830508474576No Hit
GTAATTGAAGGCCGGCACAC10.3389830508474576No Hit
AATAGTCCTTGTAGCTCGAAGTCACTAACC10.3389830508474576No Hit
CTGCGACTCCAACACATCCGA10.3389830508474576No Hit
TTCTCAGCGTCGAACCAAAAA10.3389830508474576No Hit
CTCAAGTGAATTTTCTAATGATCGGCTATA10.3389830508474576No Hit
GAGGCTCCTGATGTACTGAC10.3389830508474576No Hit
CGTTCATTAAAATTCCACTCG10.3389830508474576No Hit
TGAGTAGTCGAAACATGCGAC10.3389830508474576No Hit
TCGAAAGCCGCCTTATCCTTACCA10.3389830508474576No Hit
GTGGGCCAGTCTAGAAGCGTTACT10.3389830508474576No Hit
CAGGCGTGGCACTCAATAGTA10.3389830508474576No Hit
TCTCATTGAACATAGGCGTCCC10.3389830508474576No Hit
TCCACTCGAGACCTCATAATTT10.3389830508474576No Hit
GGAGCACCTTCGTCTGCGCTGA10.3389830508474576No Hit
TGTACGACGCGACCAGGTGGC10.3389830508474576No Hit
CGGATACAACACAAGATATGA10.3389830508474576No Hit
TCGGAATCCGTAATTGCCCCG10.3389830508474576No Hit
AATAGTCCTTGTAGCTCGAAGTCACTAACCT10.3389830508474576No Hit
CGTATAACTCACGTATCTCTTGACACAACCATT10.3389830508474576No Hit
GAGCACCTTCGTCTGCGCTG10.3389830508474576No Hit
CATTGAACATAGGCGTCCCAG10.3389830508474576No Hit
TCATGAAGCTGGCAGCGAGAG10.3389830508474576No Hit
CTATACTTGGCCACCTTATGG10.3389830508474576No Hit
ATAGGTATAAAGACATTAAAC10.3389830508474576No Hit
CTTTCTCATTGAACATAGGCGTCCCAGATA10.3389830508474576No Hit
ACCTGAAGCATTTCCTGAACG10.3389830508474576No Hit
TCTCGTGATATTCTGGTTGGTCTC10.3389830508474576No Hit
AACTGCTGGGCCTCGACATTC10.3389830508474576No Hit
TGTTATGTCCACACACCCGCCA10.3389830508474576No Hit
TTAAGGCGGACGAAGAAATGT10.3389830508474576No Hit
CTTTCTTTATTCCTGCTAAC10.3389830508474576No Hit
TTGGGGCCCGCGATAATGACG10.3389830508474576No Hit
TAACCACTTATTTACCTCGTC10.3389830508474576No Hit
TGATCCCGAAACTTTAGCTTGAGCC10.3389830508474576No Hit
CAATGAACCCGAATAACCCAG10.3389830508474576No Hit
GTTCTAATATCAGGCTGCCCA10.3389830508474576No Hit
GGTGGCTCCTTAAACATCAGTAATTCTGCGCAA10.3389830508474576No Hit
TAAGGCGGACGAAGAAATGTC10.3389830508474576No Hit
TGCGACTCCAACACATCCGAG10.3389830508474576No Hit
ATTTGATTCCTTATCTGCACC10.3389830508474576No Hit
AATTGAAGGCCGGCACACTC10.3389830508474576No Hit
GACCACTAGACTCACACCGGG10.3389830508474576No Hit
AATCTGGCACTGTCATGACAC10.3389830508474576No Hit
CATCATCTCAACGACAGCAACCTGGGCCTTC10.3389830508474576No Hit
CACCGAAGCCCACTCCATCGC10.3389830508474576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)