FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Flavivirus.15-35nt.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Flavivirus.15-35nt.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences283
Sequences flagged as poor quality0
Sequence length15-30
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGACTGCTGCCCACCCA103.53356890459364No Hit
GGTGATAGCATTGGCTCCTGTACTGGCACT41.4134275618374559No Hit
ACTACGCAATCGGCTGTCACCA41.4134275618374559No Hit
GTATCTTTTACCCAGCTCTTATAAA41.4134275618374559No Hit
CCAACACATCCGAGCGAGCCCCA41.4134275618374559No Hit
ACAGCGAGACCGATATAACCATTACCTA41.4134275618374559No Hit
ATTGAACATAGGCGTCCC41.4134275618374559No Hit
TCCACTCGAGACCTCATAATC41.4134275618374559No Hit
GGAAGCACTAGAAACTGAAACC31.0600706713780919No Hit
GACATTCGTTCCAGCC31.0600706713780919No Hit
CTGGTAACGTATGATGACATC31.0600706713780919No Hit
TGCAATGAACCCGAATAACCC31.0600706713780919No Hit
TGAGAACCCAGGCTGCTCCGA31.0600706713780919No Hit
GCAGTTGCTATTACCATTATAAAAAAAC31.0600706713780919No Hit
CCGAGCTCAACAGTCAATTTGGAGT31.0600706713780919No Hit
CCCATTTGACAGTAGCGGCGCCA31.0600706713780919No Hit
GAAACTGTAAGCCGCAACGAG31.0600706713780919No Hit
TGAACAAACTGAGTACTTGGC31.0600706713780919No Hit
CGACAATAACGACGTATGCCACC31.0600706713780919No Hit
CTGAGGCGCCAGTTTTGATCTTATCGA31.0600706713780919No Hit
ACCTCGACTGCCAACATTAC20.7067137809187279No Hit
CCGCGACTGCTGCCCACCCAC20.7067137809187279No Hit
ATGAGCACCTGTATACCGGTA20.7067137809187279No Hit
TTCCTTATCTGCACCAG20.7067137809187279No Hit
TATCCTAACATCTTCGCCTGC20.7067137809187279No Hit
TATGCAAGCCCACCGGACCCA20.7067137809187279No Hit
CGGCGCTTAAGATGAACAGAG20.7067137809187279No Hit
GATATCCAATTATGACGCCCT20.7067137809187279No Hit
TCCACTCGAGACCTCATAATCA20.7067137809187279No Hit
AAGATTGAACCTGGAGAAGCCC20.7067137809187279No Hit
TCAGTAGTTCTAGCCATGGTA20.7067137809187279No Hit
TCCATGTAATTGAAGGCCGGC20.7067137809187279No Hit
CAGCAACTCCGCCGATCGCACCA20.7067137809187279No Hit
TGTAATTGAAGGCCGGCACAC20.7067137809187279No Hit
CATGAGCCTACCTGG20.7067137809187279No Hit
TAATATCAGGCTGCCCAAAAC20.7067137809187279No Hit
TTTGAATGTTTGTTGGGTACC20.7067137809187279No Hit
AGTAGCAGGCCAAATATTAAG20.7067137809187279No Hit
AAGATTGAACCTGGAGAAGCC20.7067137809187279No Hit
GTCCATGAGTCACCTCTGTAAGTCAA20.7067137809187279No Hit
AGCGGAAAACTCGCCTGGCGTC20.7067137809187279No Hit
CAAGCCCACCGGACCCAGCGC20.7067137809187279No Hit
GTCACCGGATCGTAAGCC20.7067137809187279No Hit
CTCCAAATTCTCCAAAG20.7067137809187279No Hit
TGGGGCCCGCGATAATGACG20.7067137809187279No Hit
TTAAAATTCCACTCGAGACCT20.7067137809187279No Hit
CGGAGCGCGTCATAAT20.7067137809187279No Hit
TTGTTGTATGTTTTATCGCCCCTTCACGT20.7067137809187279No Hit
CATGAAGCTGGCAGCGAGAGC20.7067137809187279No Hit
GCGGCGCTTAAGATGAAC20.7067137809187279No Hit
GTATGACTCGGAGTGTTTCCA20.7067137809187279No Hit
GACAATTGGCCTGTAAGTCAT20.7067137809187279No Hit
ACAGGACGAGAACAAGGTTGA20.7067137809187279No Hit
TACAGGACGAGAACAAGGTTGATG20.7067137809187279No Hit
TATGGCACGTATACTATCAAA20.7067137809187279No Hit
TGTTAGGGACATCTGATGAGAA20.7067137809187279No Hit
ATAGCATTGGCTCCTGTACTG20.7067137809187279No Hit
AACAAACTGAGTACTTGGCAC20.7067137809187279No Hit
CACCGAAGCCCACTCCATCGC20.7067137809187279No Hit
TGTCCCATGCTCTCCTCCATCAGT20.7067137809187279No Hit
TTGTGCAATGAACCCGAATAA20.7067137809187279No Hit
CAATGAACCCGAATAACCCA10.35335689045936397No Hit
TTGCCTTAGCACCTCGACTGC10.35335689045936397No Hit
TCCTTATTGCTGCCTGT10.35335689045936397No Hit
CAACAACGCATGGCACTTCTC10.35335689045936397No Hit
CGTTTTCCTGATAACTTAAATTGAA10.35335689045936397No Hit
GTTTGGAACAGGCGCTCGGTC10.35335689045936397No Hit
TATTTGACCCCTGACAG10.35335689045936397No Hit
ATTGAACAGTAGGTGCCTTG10.35335689045936397No Hit
ACTACGCAATCGGCTGTCACC10.35335689045936397No Hit
AAACTGAGTACTTGGCACCGC10.35335689045936397No Hit
CTCTTTTATTGGCGCTGGGAA10.35335689045936397No Hit
CTCAATACTGTTGACATCACC10.35335689045936397No Hit
ACGACGTATGCCACCAGAGAC10.35335689045936397No Hit
GACAGTAGCGGCGCTTAAGATGAA10.35335689045936397No Hit
TCACTGCTAGCAGCA10.35335689045936397No Hit
TTTCCTTAGCACCTCGACTGC10.35335689045936397No Hit
TGACCAAGTAACAGAGCCA10.35335689045936397No Hit
TAATAAACCGGACGTACTTCC10.35335689045936397No Hit
AAAAACACAACTATACTCG10.35335689045936397No Hit
TATTGATTTCATGGCCCCTGC10.35335689045936397No Hit
TGACCGATGCGAGTGAGAGCG10.35335689045936397No Hit
ACCAGTCCGGAAATTCATCAAA10.35335689045936397No Hit
CCTTTCTTAACTTTCCATCTG10.35335689045936397No Hit
AGGACGAGAACAAGGTTGATGCA10.35335689045936397No Hit
TTTTTAGCCGCATTGA10.35335689045936397No Hit
CGCCGAAGATAGTTGTACCGC10.35335689045936397No Hit
ATTCCTTATCTGCACCAG10.35335689045936397No Hit
CGACTGCTGCCCACCCACTTG10.35335689045936397No Hit
CGATTCTCAACTTCTCGCCCA10.35335689045936397No Hit
CACCACTCATTGAGCCCAGAA10.35335689045936397No Hit
CATCCAATCAGGTTTCCACTC10.35335689045936397No Hit
CAAGAGCATTCATACCTG10.35335689045936397No Hit
TCCGGAAATTCATCAATGAAC10.35335689045936397No Hit
TTGGTAGCCTCTTCATTTTCC10.35335689045936397No Hit
TCAATGAGCACCTGTATACCG10.35335689045936397No Hit
AATTATGACGCCCTGCACTTC10.35335689045936397No Hit
CGTCCAAAACGAAGCCATCCAC10.35335689045936397No Hit
TCCGCCGATCGCACTCAACACC10.35335689045936397No Hit
GTTCCCGCGATTAATTCTTCCTG10.35335689045936397No Hit
TGAGGCTCCTGATGTACTGAC10.35335689045936397No Hit
CAGTAGTTCTAGCCATGGTATCCA10.35335689045936397No Hit
CTGCCCAAAACTATCATATGACC10.35335689045936397No Hit
ATTAACCACCCATTTGACAG10.35335689045936397No Hit
GCAATGAACCCGAATAACCCA10.35335689045936397No Hit
CGAGCTCAACAGTCAATTTGGAGT10.35335689045936397No Hit
TCATTGAACATAGGCGTCCCA10.35335689045936397No Hit
ACCAAGTAACAGAGCCAATTG10.35335689045936397No Hit
GACAATTGGCCTGTAAG10.35335689045936397No Hit
TACCGAAATCGACCACTAGAC10.35335689045936397No Hit
TATATCGCACCCTATTATCCA10.35335689045936397No Hit
CCAATTATGACGCCCTGCACTA10.35335689045936397No Hit
TCAACCGAAACACCAGCCATG10.35335689045936397No Hit
ATCAAGATTGAACCTGG10.35335689045936397No Hit
CCGGACCCAGCGCATG10.35335689045936397No Hit
ATAATTTCTGTACATACT10.35335689045936397No Hit
CGAAAGCCGCCTTATCCT10.35335689045936397No Hit
ACCATAACGAAGTTGCTAGCAC10.35335689045936397No Hit
CACACCGGGGACAGTGATAGC10.35335689045936397No Hit
CAATTCCACCTATGGCACCTC10.35335689045936397No Hit
GCGACTCCAACACATCCGAG10.35335689045936397No Hit
ATTCCACCTATGGCACCTC10.35335689045936397No Hit
ACCCGTTGGAAGTCCCTGCTC10.35335689045936397No Hit
CAACCTACCCCGTTCTATGCG10.35335689045936397No Hit
AAACTGTAAGCCGCAACGAGC10.35335689045936397No Hit
CGTTAAGTAGGTTCCCGCGCAC10.35335689045936397No Hit
CGTGTAACTCATACCTGGTAT10.35335689045936397No Hit
GTAATTGAAGGCCGGCACAC10.35335689045936397No Hit
AATAGTCCTTGTAGCTCGAAGTCACTAACC10.35335689045936397No Hit
GATGTTGGAGATCAA10.35335689045936397No Hit
TCAAGAGCATTCATACCT10.35335689045936397No Hit
ATCGATCGCACTCAA10.35335689045936397No Hit
CTGCGACTCCAACACATCCGA10.35335689045936397No Hit
TTCTCAGCGTCGAACCAAAAA10.35335689045936397No Hit
CTCAAGTGAATTTTCTAATGATCGGCTATA10.35335689045936397No Hit
GAGGCTCCTGATGTACTGAC10.35335689045936397No Hit
CGTTCATTAAAATTCCACTCG10.35335689045936397No Hit
TGAGTAGTCGAAACATGCGAC10.35335689045936397No Hit
TCGAAAGCCGCCTTATCCTTACCA10.35335689045936397No Hit
GTGGGCCAGTCTAGAAGCGTTACT10.35335689045936397No Hit
CAGGCGTGGCACTCAATAGTA10.35335689045936397No Hit
TCTCATTGAACATAGGCGTCCC10.35335689045936397No Hit
TCCACTCGAGACCTCATAATTT10.35335689045936397No Hit
GGAGCACCTTCGTCTGCGCTGA10.35335689045936397No Hit
ATGCCTGTGAGGACACCGC10.35335689045936397No Hit
TGTACGACGCGACCAGGTGGC10.35335689045936397No Hit
CGGATACAACACAAGATATGA10.35335689045936397No Hit
TCGGAATCCGTAATTGCCCCG10.35335689045936397No Hit
AACGACGTATGCCACCAG10.35335689045936397No Hit
GAGCACCTTCGTCTGCGCTG10.35335689045936397No Hit
CATTGAACATAGGCGTCCCAG10.35335689045936397No Hit
TCATGAAGCTGGCAGCGAGAG10.35335689045936397No Hit
TTGGGGCCCGCGATAATGA10.35335689045936397No Hit
CTATACTTGGCCACCTTATGG10.35335689045936397No Hit
ATAGGTATAAAGACATTAAAC10.35335689045936397No Hit
CAGGTTTCAGGCGGACGA10.35335689045936397No Hit
GAATCCTCGTTGACC10.35335689045936397No Hit
CTTTCTCATTGAACATAGGCGTCCCAGATA10.35335689045936397No Hit
CGTAAACCGGTAAGT10.35335689045936397No Hit
ACCTGAAGCATTTCCTGAACG10.35335689045936397No Hit
GTTGCATTCAGGGTA10.35335689045936397No Hit
TCTCGTGATATTCTGGTTGGTCTC10.35335689045936397No Hit
AACTGCTGGGCCTCGACATTC10.35335689045936397No Hit
TGTTATGTCCACACACCCGCCA10.35335689045936397No Hit
AGCCCACCGGACCCA10.35335689045936397No Hit
TTAAGGCGGACGAAGAAATGT10.35335689045936397No Hit
CTTTCTTTATTCCTGCTAAC10.35335689045936397No Hit
TTGGGGCCCGCGATAATGACG10.35335689045936397No Hit
TAACCACTTATTTACCTCGTC10.35335689045936397No Hit
TGATCCCGAAACTTTAGCTTGAGCC10.35335689045936397No Hit
CAGACTTTGACCCCACA10.35335689045936397No Hit
TCCTCTGTCTCCCACT10.35335689045936397No Hit
CAATGAACCCGAATAACCCAG10.35335689045936397No Hit
GTTCTAATATCAGGCTGCCCA10.35335689045936397No Hit
TATTTGACCGGTTGATT10.35335689045936397No Hit
TAAGGCGGACGAAGAAATGTC10.35335689045936397No Hit
CGCCGATCGCACTCAACACAG10.35335689045936397No Hit
TGCGACTCCAACACATCCGAG10.35335689045936397No Hit
ATTTGATTCCTTATCTGCACC10.35335689045936397No Hit
AATTGAAGGCCGGCACACTC10.35335689045936397No Hit
GACCACTAGACTCACACCGGG10.35335689045936397No Hit
TTTAATCACTGAGGCGCCA10.35335689045936397No Hit
AATCTGGCACTGTCATGACAC10.35335689045936397No Hit
GTGAGGGTCGTGGCTGCGA10.35335689045936397No Hit
CATGGCTGACTGAAAT10.35335689045936397No Hit
ATACCGATCTAGCTTAC10.35335689045936397No Hit
TATGACTCGGAGTGTTTCCA10.35335689045936397No Hit
GTTATGGTGCAGTCGAG10.35335689045936397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)