FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Phlebovirus_segment_L.15-35nt.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Phlebovirus_segment_L.15-35nt.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513
Sequences flagged as poor quality0
Sequence length15-30
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAAGATTCTGGACCCTGAG122.3391812865497075No Hit
TTGTTAAAGAAGATTCTGGACCCTGAGGAT101.949317738791423No Hit
AGAAGATTCTGGACCCTGAGG101.949317738791423No Hit
GAGGCTGAAGTTGGTACATTGAATGAAACA81.5594541910331383No Hit
ACTGCAAGCTAGAGTTTCTGACACGAGA71.364522417153996No Hit
TTCAGATCCTTGGACCTGTGGACTCGGA71.364522417153996No Hit
AAGGCACAGATCGGAAGTTGGAAACCATAC71.364522417153996No Hit
TAGGTGAGATGGATAACCTAAAGAGGTTGC71.364522417153996No Hit
CAGACAACCAGACTCCTGATGAAATCAT61.1695906432748537No Hit
ACAAGACTGCACGAAGCCACCAGAG61.1695906432748537No Hit
TTGACCCATGATGTGCTGAGCATTTCAA61.1695906432748537No Hit
CGAGAGGGCAGAAGATGATTCAATG61.1695906432748537No Hit
TGGGCTCCACTCTAGAAATGA61.1695906432748537No Hit
ACATTGGACGAGAGGGCAGAAGATGATTC61.1695906432748537No Hit
AAGAGGTTCTGGACAATCATGATTGG61.1695906432748537No Hit
TACAGGCCTGAAGAGATAAAC61.1695906432748537No Hit
TGGCAGAACTGAACGATTATGAGGAAAA50.9746588693957114No Hit
ACCTGTGGACTCGGAAGAAAATAAAAAA50.9746588693957114No Hit
CTGGCATGATGGACAAACTGAGAATGAAAA50.9746588693957114No Hit
CATAGATACAGGCCTGAAGAGATAAACACT50.9746588693957114No Hit
GATGAAACTGAGAACTCCTGGGCTCCACT50.9746588693957114No Hit
TGGACCTGTGGACTCGGA50.9746588693957114No Hit
ATAAAGATGAGACTCCTCAAGGACCCTCCT50.9746588693957114No Hit
ATTTCAGGATATCGAAAAAAGAGAGT40.7797270955165692No Hit
AAGACTGCACGAAGCCACCAGAGGA40.7797270955165692No Hit
ACATTGGACGAGAGGGCAGAAGATGAAA40.7797270955165692No Hit
TCATAAACAGACTAAGAGAAGAGCAAA40.7797270955165692No Hit
CTGAGAGGCTTCTAAA40.7797270955165692No Hit
CGGAGGAGATATTTAGAAATGAAAATAA40.7797270955165692No Hit
GAAGGCACAGATCGGAAGTTGGAAA30.5847953216374269No Hit
TTGGACCTGTGGACTCGGAAG30.5847953216374269No Hit
TAAACAGACTAAGAGAAGAGC30.5847953216374269No Hit
ATAGATACAGGCCTGAAGAGATAAAC30.5847953216374269No Hit
AAATACACCGGATTTTG30.5847953216374269No Hit
AACATTGGACGAGAGGGC30.5847953216374269No Hit
CATAAACAGACTAAGAGAAGAGCAAA30.5847953216374269No Hit
GAGATGAAACTGAGAACTCCTGGGCTCCA30.5847953216374269No Hit
GGTAAGAGGATGCGTAGATAA30.5847953216374269No Hit
ACATTGGACGAGAGGGCAGAAGATGATA30.5847953216374269No Hit
CAGGCCTGAAGAGATAAACAC30.5847953216374269No Hit
AAGGCACAGATCGGAAGTTGGAAACCATA30.5847953216374269No Hit
TAAGAGGATGCGTAGATAATA30.5847953216374269No Hit
CAAGGCGACGAATTAATGGGA30.5847953216374269No Hit
GAAGATTCTGGACCCTGAGGA30.5847953216374269No Hit
TCCCAACAACCTGTGCCGAGCC30.5847953216374269No Hit
ACACAAGTAGAAATCCCAAAC30.5847953216374269No Hit
TTAGACAAGGCGACGAATTAATGGGATAAA30.5847953216374269No Hit
AACATTGGACGAGAGGGCAG30.5847953216374269No Hit
ATAGATACAGGCCTGAAGAGATAAACAC30.5847953216374269No Hit
TTGGACGAGAGGGCAGA30.5847953216374269No Hit
ACTAAGAGAAGAGCAAA30.5847953216374269No Hit
CCTATCTCCTTTGGAAACCAGTACC30.5847953216374269No Hit
CTTCAATGATGAAAA20.3898635477582846No Hit
GCCTCTGACTTCTTTAG20.3898635477582846No Hit
ATCCCTTCCTTCACACTC20.3898635477582846No Hit
CACAACATTGGACGAGAGGGC20.3898635477582846No Hit
GGATGATGATCGGTTCTTAC20.3898635477582846No Hit
CCGAATCAGGTGCCTTACAGATTAG20.3898635477582846No Hit
CTAGTAGTCCCCTTCCCATTC20.3898635477582846No Hit
ATACAGGCCTGAAGAGATAAACACT20.3898635477582846No Hit
CTTGGACCTGTGGACTCGGAA20.3898635477582846No Hit
CAGGCCTGAAGAGATAAA20.3898635477582846No Hit
ACCCTGAGGATCTGTACGATC20.3898635477582846No Hit
AGACAGGACATGCAAG20.3898635477582846No Hit
TCCCAGTCAGCTGATAAATACAAA20.3898635477582846No Hit
AACCATGAACCTGCCAGATGAC20.3898635477582846No Hit
TTACAGACTTTTGGGCTCCAC20.3898635477582846No Hit
CAACATTGGACGAGAGGGCAGAAGATGAA20.3898635477582846No Hit
AATGAAAGATCCCTCAAC20.3898635477582846No Hit
TATAGAGATTGAAGCATGCGC20.3898635477582846No Hit
TGTGATGGTCTTCGAGGATGA20.3898635477582846No Hit
ATCTGACACCACTTCCTTTAGCCCT20.3898635477582846No Hit
TGGGGGCAGGTGATATAATCG20.3898635477582846No Hit
TCCATAGATACAGGCCTGAAGAGATAA20.3898635477582846No Hit
AAGGCCAATGGATTGCAA20.3898635477582846No Hit
ATCTGACACCACTTCCTTTAGCCCG20.3898635477582846No Hit
CATATCAAGCTAGGGCGCCCA20.3898635477582846No Hit
CATCCTCATAAGACCAACCACCA20.3898635477582846No Hit
TGGATACTAGTTCTCCCGAGC20.3898635477582846No Hit
GTTAAAGAAGATTCTGGACCCTGAGGAT20.3898635477582846No Hit
TAAAGAAGATTCTGGACCCTGAGGA20.3898635477582846No Hit
TTCCCATTCCTGTAGTGAAAGCTG20.3898635477582846No Hit
AATTTGTTGAGAACCATGAACCTGCC20.3898635477582846No Hit
TAAATACACCGGATTTTGT20.3898635477582846No Hit
TGGACAAACTGAGAATGAAAA20.3898635477582846No Hit
CCTGTGGACTCGGAAGAA20.3898635477582846No Hit
CAACCTGTGCCGAGCCTACTGCAAAAA20.3898635477582846No Hit
ACATTGGACGAGAGGGC20.3898635477582846No Hit
TGGATCTGAAACTATGAGGAGAGAAATAAA20.3898635477582846No Hit
GATCACGTCTCATAG20.3898635477582846No Hit
TAGCTCAGTGTCCCTTCCAAG20.3898635477582846No Hit
GATGAAACTGAGAACTCCTGG20.3898635477582846No Hit
TAGATACAGGCCTGAAGAGATAAACA20.3898635477582846No Hit
TCAGCATGGTGGACTTAG20.3898635477582846No Hit
CATATTCAGATCCTTGGACCT20.3898635477582846No Hit
GATGGACAAACTGAGAATG20.3898635477582846No Hit
ACCTGTGGACTCGGAAGAAAATAAAGTTGA20.3898635477582846No Hit
CGACTAGAAGCAGGCCTCGAG20.3898635477582846No Hit
AAACTGACTGTTCCTTGTAAATACAC20.3898635477582846No Hit
TGTGATGGTCTTCGAGGATG20.3898635477582846No Hit
TATCTATCTAGAGGGTGATTGGACCAGT20.3898635477582846No Hit
GGCAGAAGATGATTCAATGAG20.3898635477582846No Hit
GACTTGAGAGCAGTGACAGAA20.3898635477582846No Hit
TGATTAATGACAAGAACACCC20.3898635477582846No Hit
TGGACCTGTGGACTCGGAAG20.3898635477582846No Hit
ATAGAGAAGGATGGAGTCAC20.3898635477582846No Hit
TAGAGAAGGATGGAGTCACCC20.3898635477582846No Hit
GCTCAGCACTACTAAACC10.1949317738791423No Hit
AGGCCTGGTGGATCCCTTCC10.1949317738791423No Hit
CAGGGCTTTTGAAAAA10.1949317738791423No Hit
GCATTGAGAGTTGTTGCTGAAA10.1949317738791423No Hit
TCCCGGATTTTGTGT10.1949317738791423No Hit
GAATAATGGCTCAAGTGGAC10.1949317738791423No Hit
CTAACTAGAGAGAGCTCGATTGAT10.1949317738791423No Hit
ATTTTCAGATGATCCAGCGCAC10.1949317738791423No Hit
AGAGTGGATGAGCTAACT10.1949317738791423No Hit
AGAGAGTAGATGTGATGGTC10.1949317738791423No Hit
GACCTGTGGACTCGGA10.1949317738791423No Hit
GTTAAAGAAGATTCTGGACCCTGAGGA10.1949317738791423No Hit
TTAAAGAAGATTCTGGACCCTGAGGA10.1949317738791423No Hit
CACTCTATGCACAAATGATGATG10.1949317738791423No Hit
ACTCAAATGATAAAA10.1949317738791423No Hit
TGTCAATGATGAAAA10.1949317738791423No Hit
TAGATACAGGCCTGAAGAGATAAACACT10.1949317738791423No Hit
ACAGGCCTGAAGAGATAAA10.1949317738791423No Hit
ACGAGAGGCCAGAAGATGATTCAATGA10.1949317738791423No Hit
CAGTCAATGTTTAGAGG10.1949317738791423No Hit
ATGTGATGGTCTTCGAGGATG10.1949317738791423No Hit
ATTGAACCTCTAACCAAGATGACAGACAAC10.1949317738791423No Hit
CTATCAGAGGAAGGAGCACGC10.1949317738791423No Hit
GAGAGGCTGATGAAGT10.1949317738791423No Hit
ATGGATGAAGAGGGGTGACAAC10.1949317738791423No Hit
TGTCAATGATGAAAAG10.1949317738791423No Hit
GAAGATTCTGGACCCTGAGG10.1949317738791423No Hit
CTCCCATATCACTTCCCAGTCAGCTG10.1949317738791423No Hit
CATAGATACAGGCCTGAAGAGATA10.1949317738791423No Hit
TCTATCACCCCCGTGCCAA10.1949317738791423No Hit
ACGAGAGGGCAGAAGATGATTCAATGA10.1949317738791423No Hit
CAACATTGGACGAGAGGGCAG10.1949317738791423No Hit
GAGGCTTTAGACAAG10.1949317738791423No Hit
AAAGCTTCGTCAATGAAA10.1949317738791423No Hit
CATGGCAGACGTCGCAAC10.1949317738791423No Hit
TGACTGGTGGCTCCTACGTGCGA10.1949317738791423No Hit
AATCGGCACCTCAAATAGACA10.1949317738791423No Hit
CCTCAAGGACCCTCCTCAAGTC10.1949317738791423No Hit
TGACTCAGATCCGATCTTCAC10.1949317738791423No Hit
AAGAGAAATCAAGATACACTG10.1949317738791423No Hit
CGTGTGGGCTAGTAAT10.1949317738791423No Hit
TAATGACAAGAACACCC10.1949317738791423No Hit
TAAAGTTGCCGGATGAGTTAC10.1949317738791423No Hit
TTCAGGACTCTTGACTGGTGG10.1949317738791423No Hit
CTGGACCCTGAGGATCTGTAC10.1949317738791423No Hit
GAAACTGAGAACTCCTGGGCT10.1949317738791423No Hit
CTACGTGGACAAAGAAATTTC10.1949317738791423No Hit
CTGGCATGATGGACAAACTGAGAA10.1949317738791423No Hit
ATAAGAGCTATCAGAGGAAGG10.1949317738791423No Hit
AGATTCTGGACCCTG10.1949317738791423No Hit
ATGAAACTGAGAACTCCTGGG10.1949317738791423No Hit
AAAAAGATGGGCGAAAGAGAG10.1949317738791423No Hit
TCCCAACAACCTGTGCCGAGC10.1949317738791423No Hit
ATAGATACAGGCCTGAAGAGATAAA10.1949317738791423No Hit
ACATTGGACGAGAGGGCAGAAGATGAT10.1949317738791423No Hit
TGGCAGACGTCGCAACAGAGC10.1949317738791423No Hit
AAGGACCCTCCTCAAG10.1949317738791423No Hit
ACACCACTTCCTTTAGCCC10.1949317738791423No Hit
TAGAAGAAGAGAACTAAA10.1949317738791423No Hit
TACCAGACCCTTTGCCCCATC10.1949317738791423No Hit
ACTCATGGCAGACGTCGCAAC10.1949317738791423No Hit
AGAGAGCTCGATTGAT10.1949317738791423No Hit
AGGCACAGATCGGAAGTTGGAAA10.1949317738791423No Hit
TGGATGAAGAGGGGTGACAAC10.1949317738791423No Hit
CAAGTAGAAATCCCAAAC10.1949317738791423No Hit
GTGGACTTAGAGAAA10.1949317738791423No Hit
AGCTAGAGTTTCTGACACGAG10.1949317738791423No Hit
GATGGTGAATCGGCGGTTTAC10.1949317738791423No Hit
TGTGCCGAGCCTACTG10.1949317738791423No Hit
ACAACATTGGACGAGAGGGCA10.1949317738791423No Hit
TTCTGGACCCTGAGGA10.1949317738791423No Hit
TAGGGCGCCCATCAAC10.1949317738791423No Hit
GAGAACCATGAACCTGCC10.1949317738791423No Hit
CCTGAAGAGATAAACACT10.1949317738791423No Hit
AGGCACAGATCGGAAGTTGGAAACCATAC10.1949317738791423No Hit
TTGCCGACTTGAGAG10.1949317738791423No Hit
ATCTGTACGATCCGGACTCCAC10.1949317738791423No Hit
AAGGAGGAAAGGAAC10.1949317738791423No Hit
CATTGGACGAGAGGGCAGAAGATGATTC10.1949317738791423No Hit
TGCATTGAGAGTTGTTGCTGAAA10.1949317738791423No Hit
GGCACAGATCGGAAGTTG10.1949317738791423No Hit
TAGTAGTCCCCTTCCCATTCC10.1949317738791423No Hit
TTTGCTAAAAAGATGGGCGAA10.1949317738791423No Hit
GGTAAGAGGATGCGTAGATA10.1949317738791423No Hit
CATAAACAGACTAAGAGAAGAGCAAAAG10.1949317738791423No Hit
AACCTGTGCCGAGCCTACTGCAAAAA10.1949317738791423No Hit
CCTCGACTGGCTATACC10.1949317738791423No Hit
AAGAAGATACTGGACCCTGA10.1949317738791423No Hit
TGGACCTGTGGACTCGGAAGAAACC10.1949317738791423No Hit
TAGTAGTCCCCTTCCCATTC10.1949317738791423No Hit
ATTAATGACAAGAACACCCTTGATG10.1949317738791423No Hit
TGAGAATTAGGTGAGATGGATAAC10.1949317738791423No Hit
AAAGATGAGACTCCTCAAGGA10.1949317738791423No Hit
TGGGCTGGCATGATGGACAAA10.1949317738791423No Hit
GAGAGGGCAGAAGATGATTCAATG10.1949317738791423No Hit
TGAGAACCATGAACCTGCC10.1949317738791423No Hit
ATGAAACTGAGAACTCCTGG10.1949317738791423No Hit
GATGAAACTGAGAACTCCTGGGCTCCAC10.1949317738791423No Hit
CATAAACAGACTAAGAGAAGAGCA10.1949317738791423No Hit
GACCTGTGGACTCGGAAGAAACC10.1949317738791423No Hit
GAATCGGCACCTCAAATAGACATACCAC10.1949317738791423No Hit
CCAAGACCAGCAGAAAACCTC10.1949317738791423No Hit
TGGACTCGGAAGAAAATAAAG10.1949317738791423No Hit
AGTGGAGGCTTTAGACAAGGC10.1949317738791423No Hit
AGGCTGAAGTTGGTACATTGAATGAAACA10.1949317738791423No Hit
AGAAGATTCTGGACCCTG10.1949317738791423No Hit
AGGATGGTGAATCGGCGGTTTACATC10.1949317738791423No Hit
CACAAGTAGAAATCCCAAAC10.1949317738791423No Hit
CTTTGGCCAGTCAATG10.1949317738791423No Hit
TCTTACATAAACTCTG10.1949317738791423No Hit
AGAATAATGGCTCAAGTGGAC10.1949317738791423No Hit
GAGAGCTCGATTGAT10.1949317738791423No Hit
TTGTTAAAGAAGATTCTGGACCCTGAGGA10.1949317738791423No Hit
GAGAGAGATTGAATAAGATGTTGGC10.1949317738791423No Hit
TACATTGGATGATCTGGAAGAATGCAAA10.1949317738791423No Hit
AGGACCCTCCTCAAGTAAATT10.1949317738791423No Hit
CAGACTAAGAGAAGAGCAAA10.1949317738791423No Hit
ACATTGGACGAGAGGGCAGAA10.1949317738791423No Hit
CAGACAACCAGACTCCTGATGAAATCA10.1949317738791423No Hit
TCACAAGACTGCACGAAGCCACCAGAGG10.1949317738791423No Hit
ACGAGAGGGCAGAAGATGATTCAATG10.1949317738791423No Hit
TTCTGGACCCTGAGG10.1949317738791423No Hit
TGGACGAGAGGGCAGA10.1949317738791423No Hit
AAATGAATGAGTACA10.1949317738791423No Hit
ATACTAGTTCTCCCGA10.1949317738791423No Hit
GAGGATTCTGGACCCTGAGGA10.1949317738791423No Hit
ACCTGTGGACTCGGAAGAAAATAAAAAAA10.1949317738791423No Hit
CATAGATACAGGCCTGAAGAGATAAACAC10.1949317738791423No Hit
GAAACATGGGTAAGAGGATGC10.1949317738791423No Hit
GATTTTCAGATGATCCAGCGCAC10.1949317738791423No Hit
CAGGAGCTGGTCAAAAT10.1949317738791423No Hit
GAAGATTCTGGACCCTG10.1949317738791423No Hit
CTAGAGTTTCTGACACGAGAA10.1949317738791423No Hit
CTGCATCTGACACCACTTCCT10.1949317738791423No Hit
AAATGGTCTAAAGAGAAATCAAGAAA10.1949317738791423No Hit
ACGTGCGAATGGGATCAAGAAACA10.1949317738791423No Hit
ATAAAGATGAGACTCCTCAAGGACCC10.1949317738791423No Hit
GAAGATTCTGGACCCTGAG10.1949317738791423No Hit
ATAGATACAGGCCTGAAGAGATAAACACT10.1949317738791423No Hit
ATGGTGAATCGGCGGTTTAC10.1949317738791423No Hit
TTTCAATGATGAAAA10.1949317738791423No Hit
AAAGAAGATTCTGGACCCTGA10.1949317738791423No Hit
TGGCCAGTCAATGTTTAGAGG10.1949317738791423No Hit
ATACAGGCCTGAAGAGATAAACACTGATGA10.1949317738791423No Hit
CAATATCGGTAGCAGCTAGAGTGAGAGATT10.1949317738791423No Hit
AGACTGCACGAAGCCACCAGAGGA10.1949317738791423No Hit
CATTGGATGATCTGGAAGAATGCAAA10.1949317738791423No Hit
TAAGTGAAGGCACAG10.1949317738791423No Hit
CAGATCGGAAGTTGGAAACCATAC10.1949317738791423No Hit
TCCCAGTCAGCTGATAA10.1949317738791423No Hit
AAGGCACAGATCGGAAGTTGGAAA10.1949317738791423No Hit
GATCTAGAGAGCCGCCAG10.1949317738791423No Hit
AAGATTCTGGACCCTGAGGA10.1949317738791423No Hit
AAACTCTGAGAGGCTTCTAA10.1949317738791423No Hit
CTGAGAACTCCTGGGCTCCAC10.1949317738791423No Hit
ACATTGGACGAGAGGGCAGAAGATGAAAA10.1949317738791423No Hit
AATTAGATCACCCAC10.1949317738791423No Hit
CTAGGGCGCCCATCA10.1949317738791423No Hit
CATAGATACAGGCCTGAAGAGATAA10.1949317738791423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)