FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Phlebovirus_segment_M.15-35nt.new.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Phlebovirus_segment_M.15-35nt.new.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426
Sequences flagged as poor quality0
Sequence length20-35
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCTGGATGAATCCATATTCCCTACCTCATCTG133.051643192488263No Hit
TAAGTTTGAAGCACAGGTAGCATGATCCG122.8169014084507045No Hit
AAATCCGCGTGACCAAAAGAAACGAACAAAAT122.8169014084507045No Hit
ATGTAGCCTGAAGAAGAGCCATCTTGACAATGGA112.5821596244131455No Hit
TAAGTTTGAAGCACAGGTAGCATGATCCGAGAG112.5821596244131455No Hit
CTCAGAGGCCTTTAGCAATATAAACACCACCGCC102.3474178403755865No Hit
TAACCAACATGCTGATCAGCCCCTTAGATATCCA102.3474178403755865No Hit
CATGACCCATTGCACATTCTCAACCTCCTTTTTTC92.112676056338028No Hit
ACTTTGTAGGTCGCGTTGTCGCTCTTGCACTCG92.112676056338028No Hit
TTAGCAATATAAACACCACCGCCAGAACAATCAA81.8779342723004695No Hit
CAACATGCTGATCAGCCCCTTAGATATCCA81.8779342723004695No Hit
TTCAAATGCACGTACTCTAATCTTCCATTCAA81.8779342723004695No Hit
CTTTAAGTAAACAGCACAGCCGTTGGTAACCC81.8779342723004695No Hit
CCTCCACAACAGGATGATCCCATCTCAAAACAAAA81.8779342723004695No Hit
AATCCGCGTGACCAAAAGAAACGAACAAAATTTCT81.8779342723004695No Hit
TGCAAGTGACTGTTCCTGAATCTCCGTATCT81.8779342723004695No Hit
TTGCAGGTGCAGCCTCTCCAGAGCCGATGGTCA71.643192488262911No Hit
AAATCCGCGTGACCAAAAGAAACGAACAAAA71.643192488262911No Hit
AGTTTGCATAAGAGTAGCACTTCAGGTTGATCC71.643192488262911No Hit
TAGGTCGCGTTGTCGCTCTTGCACTCGAAT61.4084507042253522No Hit
CCCAATGATGGTTGAGGCGGCGCTGTGATGGACAC61.4084507042253522No Hit
CCTGAGTAAGTCAGATCTAAAGATTCAACCACACA51.1737089201877933No Hit
TTCACACAAGCTTTCTTCTGAACTCCATCAAC51.1737089201877933No Hit
TGAAGCACAGGTAGCATGATCCGAGAG51.1737089201877933No Hit
GCGGCGCTGTGATGGACACCAAGCTAAC51.1737089201877933No Hit
CCGCGTGACCAAAAGAAACGAACAAAATTTCAAA51.1737089201877933No Hit
AGGTCGCGTTGTCGCTCTTGCACTCGAATGTCTC51.1737089201877933No Hit
TAACATCCTGATAGACTAACAACCTCTGCATAAC51.1737089201877933No Hit
TCTTAGCCGTGATGATCTCTCCTTTCAC51.1737089201877933No Hit
GTTCTGTAGGTTTCTGAGTGGCTTGG40.9389671361502347No Hit
CTGATTCAATGCCATCTCTTTCCACC40.9389671361502347No Hit
ACACAAAATCCGCGTGACCAAAAGAAACAC40.9389671361502347No Hit
GTGATGGACACCAAGCTAACAGAAACCC40.9389671361502347No Hit
TTCTCAACCTCCTTTTTCCCATTCACACAAG40.9389671361502347No Hit
ATCCGCGTGACCAAAAGAAACGAACAAAATTTC40.9389671361502347No Hit
CAGAGGCCTTTAGCAATATAAACACCACCGCC40.9389671361502347No Hit
AATATAAACACCACCGCCAGAACAATCAAGAC30.7042253521126761No Hit
TATCAGCATGGATTCTGGCGCCA30.7042253521126761No Hit
CAGAGAAAGATCATGGCCCCA30.7042253521126761No Hit
CTCCTCATAGACCGATGACT30.7042253521126761No Hit
AAATCCGCGTGACCAAAAGAAAC30.7042253521126761No Hit
ACCAGATTCATGTATCCTCTAGACACTCC30.7042253521126761No Hit
TTTGAAGCACAGGTAGCATGATCCGAGAG30.7042253521126761No Hit
AACTTCACTAAGTCCCAGAGAAAGATCATGGCC30.7042253521126761No Hit
TGATATTCCATCTGAGCTGAGCCTG30.7042253521126761No Hit
CAGCACAGCCGTTGGTAACC30.7042253521126761No Hit
TAAGTAAACAGCACAGCCGTTGGTAACCCC30.7042253521126761No Hit
ACTTGACATCACAGTTGGCACAGTTCTC30.7042253521126761No Hit
CTCAGAGGCCTTTAGCAATATAAACACCACC30.7042253521126761No Hit
TCAAGACAGTAACCAACATGCTGATCAGCCCCTT30.7042253521126761No Hit
CTAAGTCCCAGAGAAAGATCATGGCCCCAGATA30.7042253521126761No Hit
CCTCAGAGGCCTTTAGCAATATAAACACC30.7042253521126761No Hit
TTAGCCGTGATGATCTCTCCT30.7042253521126761No Hit
ATAGTCGCAATCATCATGAGTATAAAGAAG30.7042253521126761No Hit
ACTATGTAGCCTGAAGAAGAG30.7042253521126761No Hit
TTGAAGCACAGGTAGCATGATCCGAGAG30.7042253521126761No Hit
GACTTTCCTAGCCAGATCTTGATTGTCGCCACT20.4694835680751174No Hit
TATGGATACAATGCACAGAACTAGTAAGTGTGA20.4694835680751174No Hit
ATCAACTGAGCAAACATCTAAGC20.4694835680751174No Hit
CTTTGTCTTAGCCGTGATGATCTCTCCTTTC20.4694835680751174No Hit
GTTGTCGCTCTTGCACTCGAATGTCTC20.4694835680751174No Hit
AAGTTTGAAGCACAGGTAGCATGATCCG20.4694835680751174No Hit
CCTTAGTGGCTGGCTTCAAATGCAC20.4694835680751174No Hit
CAAGAAACTTCACTAAGTCCC20.4694835680751174No Hit
TCAAAGAGATTCTGAGTGGTTGAAAAAA20.4694835680751174No Hit
CGCACTTAGAAACTCGGTATGCCCTTCCA20.4694835680751174No Hit
GCGTGACCAAAAGAAACGAACAAAATTTC20.4694835680751174No Hit
AGATCTTGATTGTCGCTACTGAG20.4694835680751174No Hit
ATAGACCGATGACTTTCCTAGCC20.4694835680751174No Hit
CGTTGTCGCTCTTGCACTCGA20.4694835680751174No Hit
TTTCCCAATGATGGTTGAGGCGGCGCTGTGATGGA20.4694835680751174No Hit
TAAGTTTGAAGCACAGGTAGCATGATACGAGAG20.4694835680751174No Hit
CCTCATAGACCGATGACTTTCC20.4694835680751174No Hit
CTTGTATTGGCAAAACAACTCATCTCC20.4694835680751174No Hit
TAGGTCGCGTTGTCGCTCTTGCACTCGAATGTCTC20.4694835680751174No Hit
CACAGTTGGCACAGTTCTCCTTGATCA20.4694835680751174No Hit
TCAGCATGGATTCTGGCGCCAG10.2347417840375587No Hit
ACATCCTGATAGACTAACAACCTCTGCATAAC10.2347417840375587No Hit
CCAATGATGGTTGAGGCGGCGCTGTGATGGACAC10.2347417840375587No Hit
ATGAATCCATATTCCCTACCTC10.2347417840375587No Hit
TAGACCGATGACTTTCCTAGC10.2347417840375587No Hit
AAAACAACTCATCTCCATTGCAGTCTGAGACTCCC10.2347417840375587No Hit
CCCAATGATGGTTGAGGCGGCGCTGTGATGGA10.2347417840375587No Hit
TTGTATTGGCAAAACAACTCATCTCC10.2347417840375587No Hit
ATCGAAGGTCGTCTTTCCTCC10.2347417840375587No Hit
TAAGTTTGAAGCACAGGTAGCATGATCCGAG10.2347417840375587No Hit
AACCCTGTTTGGAGGCAAGAGATG10.2347417840375587No Hit
TTCTCAACCTCCTTTTTCCCATTCACACAA10.2347417840375587No Hit
TTCTGTGTTTCCCTTTAGATTCTGAGTGTTA10.2347417840375587No Hit
CCTCAGAGGCCTTTAGCAATATAAACAC10.2347417840375587No Hit
TAGGTCGCGTTGTCGCTCTTGCACTCGAATGTCT10.2347417840375587No Hit
TCCCAGAGAAAGATCATGGCC10.2347417840375587No Hit
ACTTCACTAAGTCCCAGAGAAAGATCATGGCC10.2347417840375587No Hit
TTGTCGCTCTTGCACTCGAATGTCTC10.2347417840375587No Hit
CAGAACAATCAAGACAGTAACCAACAT10.2347417840375587No Hit
TGTATTGGCAAAACAACTCATCTCC10.2347417840375587No Hit
GAATCTCCGTATCTGCAATTTTCTGTGTTT10.2347417840375587No Hit
ATCCGCGTGACCAAAAGAAACGAACAAAATTT10.2347417840375587No Hit
AAAGAAACGAACAAAATTTCAAAAT10.2347417840375587No Hit
ATGCCTGAGTAAGTCAGATCTAA10.2347417840375587No Hit
CGCGTTGTCGCTCTTGCACTC10.2347417840375587No Hit
GGCGGCGCTGTGATGGACAC10.2347417840375587No Hit
CTTCACTAAGTCCCAGAGAAAGATCATGGCC10.2347417840375587No Hit
CATCTCAAAACAAAAGTCTGTT10.2347417840375587No Hit
TTTAAGTAAACAGCACAGCCGTT10.2347417840375587No Hit
CTCAGAGGCCTTTAGCAATATAAACACCACCGCCA10.2347417840375587No Hit
TCCTCTAGACACTCCTGATCC10.2347417840375587No Hit
ACTTTCCTAGCCAGATCTTGATTGTCGCCACT10.2347417840375587No Hit
TGGTTGAGGCGGCGCTGTGATGGACAC10.2347417840375587No Hit
AATTTCAAAATTCAATTCCTATTCAGTCATCTATA10.2347417840375587No Hit
GTGACCAAAAGAAACGAACAAAATTTCAAA10.2347417840375587No Hit
TCACACAAGCTTTCTTCTGAACTCCATCAAC10.2347417840375587No Hit
TCCTAGCCAGATCTTGATTGTCGCCACT10.2347417840375587No Hit
CATAGACCGATGACTTTCCTAGCC10.2347417840375587No Hit
ACACCAAGCTAACAGAAACCCCA10.2347417840375587No Hit
GAAGCACAGGTAGCATGATCCGAG10.2347417840375587No Hit
ACAAAATCCGCGTGACCAAAAGAAACGAACAAAAA10.2347417840375587No Hit
AGGTGCAGCCTCTCCAGAGCCGATGGTCA10.2347417840375587No Hit
GTTGTCGCTCTTGCACTCGAATGTCT10.2347417840375587No Hit
AACCCTGTTTGGAGGCAAGAGATGGATCC10.2347417840375587No Hit
CACAGGCTCTTCCTATTACTCTA10.2347417840375587No Hit
CNTCCACAACAGGATGATCCCATCTCAAAACAAAA10.2347417840375587No Hit
ATTTCAAAATTCAATTCCTATTCAGTCATCTATAG10.2347417840375587No Hit
TGACCCTATGACAATTGCCCA10.2347417840375587No Hit
CGGCGCTGTGATGGACACCAAGCTAAC10.2347417840375587No Hit
TAGGTCGCGTTGTCGCTCTTGCACTCGAA10.2347417840375587No Hit
TTGAAGGTGCAGCCTCTCCAGAGCCGATGGTCA10.2347417840375587No Hit
CACAAAATCCGCGTGACCAAAAGAAACAC10.2347417840375587No Hit
AGCTAACAGAAACCCCATCAA10.2347417840375587No Hit
CCTCCACAACAGGATGATCCCATCTCAAAACAAA10.2347417840375587No Hit
TGATATTCCATCAGAGCTGAGCCTG10.2347417840375587No Hit
ACAGCCGTTGGTAACCCCTCCT10.2347417840375587No Hit
CCCAATGATGGTTGAGGCGGCGCTGTGATGGACAA10.2347417840375587No Hit
CCTGATAATTTAGCCACTAAATAACC10.2347417840375587No Hit
CAGTCTGAGACTCCTTCAATC10.2347417840375587No Hit
CTAAGTCCCAGAGAAAGATCATGGCCCC10.2347417840375587No Hit
AAGACCAAGAGGCGCACTTAGAAACTCGGTATGCC10.2347417840375587No Hit
TCCGCGTGACCAAAAGAAACGAACAAAA10.2347417840375587No Hit
GTTTGCATAAGAGTAGCACTTCAGGTTGATCC10.2347417840375587No Hit
CCACAACAGGATGATCCCATCTCAAAACAAAAGTC10.2347417840375587No Hit
TTTGGAGGCAAGAGATGGATC10.2347417840375587No Hit
CATCTATAGAACCACATTAAA10.2347417840375587No Hit
GCACTTAGAAACTCGGTATGCCCTT10.2347417840375587No Hit
AAAACCGCGTGACCAAAAGAAACGAACAAAAT10.2347417840375587No Hit
CATTCACACACTTGACATCAC10.2347417840375587No Hit
AGGTCGCGTTGTCGCTCTTGCACTCGAAT10.2347417840375587No Hit
CTTAGCCGTGATGATCTCTCC10.2347417840375587No Hit
AAGTTTGAAGCACAGGTAGCATGATCCGAGAG10.2347417840375587No Hit

[OK]Adapter Content

Adapter graph