FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Phlebovirus_segment_S.15-35nt.new.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Phlebovirus_segment_S.15-35nt.new.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1094
Sequences flagged as poor quality0
Sequence length20-35
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGTTCTGAAGATCCTGAGAAGAGAGAGTGGCAA181.6453382084095063No Hit
AAATTATCGACGAAATGGCTGCCTTCACCTGGGA161.4625228519195612No Hit
GGAACCGCAGGTTCGGACATTTGGTCGAGCACTCG161.4625228519195612No Hit
AAAATTATCGACGAAATGGCTGCCTTCACCTGGG131.1882998171846435No Hit
TCCCCAAAGAGACTTGCTGGTATGCGAACAAA131.1882998171846435No Hit
TCTGAAGATCCTGAGAAGAGAGAGTGGCAAAGAAA131.1882998171846435No Hit
GGAACCGCAGGTTCGGACATTTGGTCGAGCACTC131.1882998171846435No Hit
CTGAAGATCCTGAGAAGAGAGAGTGGCAAAGAAAG121.0968921389396709No Hit
ATTATCGACGAAATGGCTGCCTTCACCTGGGA121.0968921389396709No Hit
CCTGAACGCCTCTAAGGCCGTATCCGTTCTAAT111.0054844606946984No Hit
AATTATCGACGAAATGGCTGCCTTCACCTGGGAA111.0054844606946984No Hit
TAAGGAGGTTCTGAAGATCCTGAGAAGAGAGAGT111.0054844606946984No Hit
CTGAAGATCCTGAGAAGAGAG111.0054844606946984No Hit
TTCGGACATTTGGTCGAGCACTCGCT111.0054844606946984No Hit
ATCGACGAAATGGCTGCCTTCACCTGGGAA111.0054844606946984No Hit
GAGGTTCTGAAGATCCTGAGAAGAGAGAGTGGCAC111.0054844606946984No Hit
ATCCGCGGGATTACGCCTGAACGCCTCTAAGGCC111.0054844606946984No Hit
CCCCAAAGAGACTTGCTGGTATGCGAACAAACA100.9140767824497258No Hit
CTGAAGATCCTGAGAAGAGAGAGTGGCAAAGAAA100.9140767824497258No Hit
TATAAGTCGAAGACAAAGCTTGAGAAGAGAGAGGA100.9140767824497258No Hit
TAAGTTGAAGACAAAGCTTGAGAAGAGAGAGGA100.9140767824497258No Hit
ACGAGAGGAACCGCAGGTTCGGACATTTGGTCGAG100.9140767824497258No Hit
GCCTGAACGCCTCTAAGGCCGTATCCGTTCTA100.9140767824497258No Hit
CTGGCTTTGACATGACAGCTCTGGCTAAGGAGGTT100.9140767824497258No Hit
CGGTGGTGCGACGCTACCATCCGCGGGATTA90.8226691042047531No Hit
CCCAAAGAGACTTGCTGGTATGCGAACAAACA90.8226691042047531No Hit
TACGCCTGAACGCCTCTAAGGCCGTATCCGTTCTA90.8226691042047531No Hit
AGAGGAACCGCAGGTTCGGACATTTGGTCGAGCAC90.8226691042047531No Hit
GTGTAGGTACAGCAAAGGGTGGAAAGAGTATCA90.8226691042047531No Hit
TTAAAATTATCGACGAAATGGCTGCCTTCAC80.7312614259597806No Hit
GAACCGCAGGTTCGGACATTTGGTCGAGCACTC80.7312614259597806No Hit
CCGCGGGATTACGCCTGAACGCCTCTAAGGCCGTA80.7312614259597806No Hit
ATCGACGAAATGGCTGCCTTCACCTGGGAAGAAA80.7312614259597806No Hit
TATAAGTCGAAGACAAAGCTTGAGAAGAG80.7312614259597806No Hit
AAGGCCGTATCCGTTCTAATCGTAGTGGTGTACA80.7312614259597806No Hit
CCCCAAAGAGACTTGCTGGTATGCGAACAAAA80.7312614259597806No Hit
AGGAACCGCAGGTTCGGACATTTGGTCGAGCACTC70.6398537477148081No Hit
GGCTTTGACATGACAGCTCTGGCTAAGGAGG70.6398537477148081No Hit
ACATTTTTGGGACCATTTAAGAAGATACA70.6398537477148081No Hit
ATTATCGACGAAATGGCTGCCTTCACCTGGGAAG70.6398537477148081No Hit
CCGCGGGATTACGCCTGAACGCCTCTAA70.6398537477148081No Hit
TAAAATTATCGACGAAATGGCTGCCTTCACCTGG70.6398537477148081No Hit
AGAGGAACCGCAGGTTCGGACATTTGGTCGAGC70.6398537477148081No Hit
GAGAAGAGAGAGTGGCAAAGAAAGATTGAAAAC70.6398537477148081No Hit
CCGCGGGATTACGCCTGAACGCCTCTAAGGCCGT70.6398537477148081No Hit
AAAATCATGACCAAAGCAGACGCCTCCTCAGCCA70.6398537477148081No Hit
GAGAGGAACCGCAGGTTCGGACATTTGGTCG60.5484460694698354No Hit
GTTGAAGACAAAGCTTGAGAAGAGAGAGGA60.5484460694698354No Hit
CCTCTAAGGCCGTATCCGTTCTAATCGT60.5484460694698354No Hit
CCAAAGAGACTTGCTGGTATGCGAACAAACACAGA60.5484460694698354No Hit
GAGGTTCTGAAGATCCTGAGAAGAGAGAGTGGCA60.5484460694698354No Hit
CAAAGAGACTTGCTGGTATGCGAACAAACACAGA60.5484460694698354No Hit
AGAGGAACCGCAGGTTCGGACATTTGGTCGAGCA60.5484460694698354No Hit
TCCGCGGGATTACGCCTGAACGCCTCTAA60.5484460694698354No Hit
AAATTATCGACGAAATGGCTGCCTTCACCTGG60.5484460694698354No Hit
AAGTCGAAGACAAAGCTTGAGAAGAGAGAGGA60.5484460694698354No Hit
ACGCCTGAACGCCTCTAAGGCCGTATCCGTTCTA60.5484460694698354No Hit
GTTGATGGGATCCACGGATTTGACTGAAAAGG60.5484460694698354No Hit
TATAAGTTGAAGACAAAGCTTGAGAAGAGAGAGGA60.5484460694698354No Hit
ATTAAGTTAAAATTATCGACGAAATGGCTGCCAT60.5484460694698354No Hit
TATAAGTTGAAGACAAAGCTTGAGAAGAGAG60.5484460694698354No Hit
TCCTCAGCCAAGATGTCCACA60.5484460694698354No Hit
AGGAACCGCAGGTTCGGACATTTGGTCGAGCACT50.4570383912248629No Hit
AGGAGGTTCTGAAGATCCTGAGAAGAGAGAG50.4570383912248629No Hit
AAATTATCGACGAAATGGCTGCCTTCAC50.4570383912248629No Hit
CGACGCTACCATCCGCGGGATTACGCCTGAAC50.4570383912248629No Hit
GGAGGTTCTGAAGATCCTGAGAAGAGAG50.4570383912248629No Hit
ATCCGCGGGATTACGCCTGAACGCCTCTAAG50.4570383912248629No Hit
CCGCGGGATTACGCCTGAACGCCTCTAAGGC50.4570383912248629No Hit
TCCGCGGGATTACGCCTGAACGCCTCT50.4570383912248629No Hit
GACGCCTCCTCAGCCAAGATGTCCAC50.4570383912248629No Hit
AGGTTCTGAAGATCCTGAGAAGAGAGAGTGGCAA50.4570383912248629No Hit
CCAAAGAGACTTGCTGGTATGCGAACAAACA50.4570383912248629No Hit
CAGGTTCGGACATTTGGTCGAGCACTCGC50.4570383912248629No Hit
TGAAGATCCTGAGAAGAGAGAGTGGCAA50.4570383912248629No Hit
AGTCGAAGACAAAGCTTGAGAAGAGAGAGGA50.4570383912248629No Hit
GCTCTGCTGGATGCCTATAAGGACTAATC50.4570383912248629No Hit
TGCGACGCTACCATCCGCGGGATTACGCCTGAAC50.4570383912248629No Hit
AGAGTGGCAAAGAAAGATTGAAAACAAT50.4570383912248629No Hit
GAGATGAGTTGATGGGATCCACGGATTTGACTGA50.4570383912248629No Hit
CGGGATTACGCCTGAACGCCTCTAAG50.4570383912248629No Hit
GAGACTTGCTGGTATGCGAACAAACACA50.4570383912248629No Hit
ATCCGCGGGATTACGCCTGAACGCCTC50.4570383912248629No Hit
GCGACGCTACCATCCGCGGGATTACGCCTGA40.3656307129798903No Hit
TTACGCCTGAACGCCTCTAA40.3656307129798903No Hit
TTACGCCTGAACGCCTCTAAG40.3656307129798903No Hit
CCATCCGCGGGATTACGCCTGAACGC40.3656307129798903No Hit
GATTACGCCTGAACGCCTCT40.3656307129798903No Hit
GATGGTTTTGCATACACTGGCTTTGACATGAC40.3656307129798903No Hit
GCCTGAACGCCTCTAAGGCCGTATCCGTTCTAATC40.3656307129798903No Hit
TTCTGAAGATCCTGAGAAGAGAGAGTGGCAAA40.3656307129798903No Hit
CTCCTCAGCCAAGATGTCCAC40.3656307129798903No Hit
CCATCCGCGGGATTACGCCTGAACGCCTCTAA40.3656307129798903No Hit
ATAAGTCGAAGACAAAGCTTGAGAAGAGAGAGGA40.3656307129798903No Hit
TTCGGACATTTGGTCGAGCACTCGC40.3656307129798903No Hit
TCGAGCGGGCGGTGGTGCGACGCTACCATCC40.3656307129798903No Hit
GGGATTACGCCTGAACGCCTCTAAGG40.3656307129798903No Hit
TATGTACTCTAACATCTAGAATAAGAATCACAAAC40.3656307129798903No Hit
GTTCGGACATTTGGTCGAGCACTCGCT40.3656307129798903No Hit
CGGACATTTGGTCGAGCACTCG40.3656307129798903No Hit
ATCCGTTCTAATCGTAGTGGTGTAC40.3656307129798903No Hit
TGGTATGCGAACAAACACAGAAGACATTTCCC40.3656307129798903No Hit
AGTTAAAATTATCGACGAAATGGCTGCCTTC40.3656307129798903No Hit
GGTTCTGAAGATCCTGAGAAGAGAGAGTGGCAA40.3656307129798903No Hit
ATTAAGTTAAAATTATCGACGAAATGGCTGC40.3656307129798903No Hit
CCAAAGAGACTTGCTGGTATGCGAACAAAC40.3656307129798903No Hit
GATTACGCCTGAACGCCTCTAA40.3656307129798903No Hit
ATTATCGACGAAATGGCTGCCTTCAC40.3656307129798903No Hit
CCCCAAAGAGACTTGCTGGTATGCGAACAAAAA30.2742230347349177No Hit
GAGAGTGGCAAAGAAAGATTGAAAACA30.2742230347349177No Hit
CGGGATTACGCCTGAACGCCTCT30.2742230347349177No Hit
ACGCCTCCTCAGCCAAGATGTCCACAGATG30.2742230347349177No Hit
GCGACGCTACCATCCGCGGGATTACGCCTG30.2742230347349177No Hit
ATCGACGAAATGGCTGCCTTCACCTGGGAAGAA30.2742230347349177No Hit
ACCGCAGGTTCGGACATTTG30.2742230347349177No Hit
GTGGCAAAGAAAGATTGAAAACAATAATGACTGG30.2742230347349177No Hit
AAATGGCTGCCTTCACCTGGG30.2742230347349177No Hit
GACAGCTCTGGCTAAGGAGGTTCTGA30.2742230347349177No Hit
ATTATCGACGAAATGGCTGCCTTCACCTG30.2742230347349177No Hit
GAGAGTGGCAAAGAAAGATTGAAAAAAAA30.2742230347349177No Hit
AAGAGAGAGTGGCAAAGAAAGATTGAAAACA30.2742230347349177No Hit
AGTGGCAAAGAAAGATTGAAAACAATAATG30.2742230347349177No Hit
TATCGACGAAATGGCTGCCTTCACCTG30.2742230347349177No Hit
ACGCTACCATCCGCGGGATTACGCCTGAA30.2742230347349177No Hit
CCCAAAGAGACTTGCTGGTATGCGAACAAACAC30.2742230347349177No Hit
AAATTATCGACGAAATGGCTGCCTTCACCT30.2742230347349177No Hit
ACCTGGGAAGAATTTAGAGATGAGTTG30.2742230347349177No Hit
CACTCTGGCTCGTTGGTGCCTGGTGTTCCCCAA30.2742230347349177No Hit
TCGGACATTTGGTCGAGCACTCGCT30.2742230347349177No Hit
GAATTTAGAGATGAGTTGATGGGATCCAC30.2742230347349177No Hit
ACCGCAGGTTCGGACATTTGGTCGA30.2742230347349177No Hit
ACATGACAGCTCTGGCTAAGGAGGTTCT30.2742230347349177No Hit
CGCCAGTTGTAGAAGAAGATGCCAGAGCAGC30.2742230347349177No Hit
CCGCAGGTTCGGACATTTGGTCGAGCA30.2742230347349177No Hit
GACGAAATGGCTGCCTTCACCTGGGAAGAATTT30.2742230347349177No Hit
TTCGGACATTTGGTCGAGCACTCGCA30.2742230347349177No Hit
AAGAGAGAGTGGCAAAGAAAGATTG30.2742230347349177No Hit
TCCGCGGGATTACGCCTGAACGCCTCTA30.2742230347349177No Hit
TCCGCGGGATTACGCCTGAACGCCTCTAAGG30.2742230347349177No Hit
AAATAAAATCATGACCAAAGCAGACGCCT30.2742230347349177No Hit
CGCTACCATCCGCGGGATTACGCCTGAAC30.2742230347349177No Hit
CCCAAAGAGACTTGCTGGTATGCGAACAAA20.18281535648994515No Hit
CACATTTTTGGGACCATTTAAGA20.18281535648994515No Hit
CAGAAGACATTTCCCCATTGAAGAC20.18281535648994515No Hit
AGAGGAACCGCAGGTTCGGACATTTGGTCGAG20.18281535648994515No Hit
CTAAGGCCGTATCCGTTCTAATCGT20.18281535648994515No Hit
CGCCTGAACGCCTCTAAGGCCGTATCCGT20.18281535648994515No Hit
CGCCTGAACGCCTCTAAGGCCGTATCCGTTCTA20.18281535648994515No Hit
CGCGGGATTACGCCTGAACGCCTCTAA20.18281535648994515No Hit
CCGCGGGATTACGCCTGAACGCCTCTAAGG20.18281535648994515No Hit
GACGCTACCATCCGCGGGATTACG20.18281535648994515No Hit
CCGCGGGATTACGCCTGAACGCCT20.18281535648994515No Hit
GAGAGGAACCGCAGGTTCGGACATTTGGTCGAGCA20.18281535648994515No Hit
GGGATTACGCCTGAACGCCTCTAAGGC20.18281535648994515No Hit
TTTGGGACCATTTAAGAAGATACATAA20.18281535648994515No Hit
TAAAATTATCGACGAAATGGC20.18281535648994515No Hit
AAGGAGGTTCTGAAGATCCTGAGAAGAG20.18281535648994515No Hit
AGAGACTTGCTGGTATGCGAACAAACACAGAA20.18281535648994515No Hit
CAGTTGTAGAAGAAGATGCCAGAGC20.18281535648994515No Hit
GCGGGATTACGCCTGAACGCCTC20.18281535648994515No Hit
AGGTTCTGAAGATCCTGAGAAGAGAGAGTGGCA20.18281535648994515No Hit
TTCTCGGAAAGAGGAAATAAAATCATGACCAAAGC20.18281535648994515No Hit
GACGCTACCATCCGCGGGATTACGCCTGAACGCC20.18281535648994515No Hit
CCTGAGAAGAGAGAGTGGCAAAGAA20.18281535648994515No Hit
TTATCGACGAAATGGCTGCCTTCAC20.18281535648994515No Hit
AAGAGACTTGCTGGTATGCGAACAAACACAGAA20.18281535648994515No Hit
CCTCAGCCAAGATGTCCACAG20.18281535648994515No Hit
AAGGCCGTATCCGTTCTAATCGT20.18281535648994515No Hit
CGGACATTTGGTCGAGCACTCGC20.18281535648994515No Hit
GGGATTACGCCTGAACGCCTCTAAG20.18281535648994515No Hit
ATTACGCCTGAACGCCTCTAA20.18281535648994515No Hit
ATTAAGTTAAAATTATCGACGAAATGGCTGCCTTC20.18281535648994515No Hit
GCGACGCTACCATCCGCGGGATTACGCCTGAACGC20.18281535648994515No Hit
GCAGGTTCGGACATTTGGTCGAGCACTC20.18281535648994515No Hit
GGTCGAGCACTCGCTCGAGCGGGC20.18281535648994515No Hit
CGGGATTACGCCTGAACGCCTCTAAGGC20.18281535648994515No Hit
CGCCTCCTCAGCCAAGATGTCCACA20.18281535648994515No Hit
CATCCGCGGGATTACGCCTGAACGCCTCTAAGGCC20.18281535648994515No Hit
TACCATCCGCGGGATTACGCCTGAACGCCTCT20.18281535648994515No Hit
GATTACGCCTGAACGCCTCTAAG20.18281535648994515No Hit
ATCCGCGGGATTACGCCTGAACGCCT20.18281535648994515No Hit
GTAGGTACAGCAAAGGGTGGAAAGAGTATCA20.18281535648994515No Hit
CAGTTGTAGAAGAAGATGCCAGAGCAGC20.18281535648994515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)