FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Phlebovirus_segment_S.15-35nt.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Phlebovirus_segment_S.15-35nt.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences287
Sequences flagged as poor quality0
Sequence length15-30
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCAAATCCGTGGATCCCATCAACTC72.4390243902439024No Hit
ACAACTGGCGAACTTGATCCCAAGGAGACA72.4390243902439024No Hit
AGTGATACTCTTTCCACCCTTTGCTGTACC72.4390243902439024No Hit
CCTAGGGCTTAATAC62.0905923344947737No Hit
CCCAGGTGAAGGCAGCCATTTCGTCGATAA62.0905923344947737No Hit
CCCAGGTGAAGGCAGCCATTTCGTCGATA62.0905923344947737No Hit
AATCCGTGGATCCCATCAACTCATC62.0905923344947737No Hit
CCAGGTGAAGGCAGCCATTTCGTCGATAA51.7421602787456445No Hit
TTTGTCTTCGACTTATAAGCCTGCCCTC51.7421602787456445No Hit
CTACAACTGGCGAACTTGATCCCAAGGA51.7421602787456445No Hit
CCAGGTGAAGGCAGCCATTTCGTCGATAAT51.7421602787456445No Hit
TACAACTGGCGAACTTGATCCCAAGG41.3937282229965158No Hit
TTTGTCTTCGACTTATAAGCCTGCCCTCC41.3937282229965158No Hit
ACACAACGCCCCTTCCACAACCACCCCC41.3937282229965158No Hit
TTTGTCTTCGACTTATAAGCCTGCCCTCCA41.3937282229965158No Hit
AACTCGACCAGAAATGCTGCTCT31.0452961672473868No Hit
TCTCTCTTCTCAGGATCTTCAGAACC31.0452961672473868No Hit
CTTTCCGAGAAGAGAATGATTCCAGTCA31.0452961672473868No Hit
TCTGTGGACATCTTGGCTGAG31.0452961672473868No Hit
TTCTTCTACAACTGGCGAACTTGATCCCA31.0452961672473868No Hit
TTCTTAAATGGTCCCAAAAATGTG31.0452961672473868No Hit
TCAAATCCGTGGATCCCATCAACTCATCTC31.0452961672473868No Hit
TCGACTTATAAGCCTGCCCTCCC31.0452961672473868No Hit
CAGGTGAAGGCAGCCATTTCGTCGATA31.0452961672473868No Hit
TTCTACAACTGGCGAACTTGATC31.0452961672473868No Hit
AACTGGCGAACTTGATCCCAAGGAGAC31.0452961672473868No Hit
TGTCTTCGACTTATAAGCCTGCCCTCC31.0452961672473868No Hit
TTCCTTTTCAGTCAAATCCGTGGATCCC20.6968641114982579No Hit
CAGAGTGATACTCTTTCCACCCTTTGCTG20.6968641114982579No Hit
CACAACCACCCCCAACTCGAC20.6968641114982579No Hit
GGAGGCGTCTGCTTTGGTCATGA20.6968641114982579No Hit
ACAACTGGCGAACTTGATCCC20.6968641114982579No Hit
CAACGCCCCTTCCAC20.6968641114982579No Hit
CATCTGTGGACATCTTGGCTGAGGAGGCG20.6968641114982579No Hit
TCTACAACTGGCGAACTTGATCCC20.6968641114982579No Hit
AATCCGTGGATCCCATCAACTCATCTC20.6968641114982579No Hit
TGTGGACATCTTGGCTGAGGA20.6968641114982579No Hit
CTCTTCTCAGGATCTTCAGAA20.6968641114982579No Hit
CTTCTACAACTGGCGAACTTGATCCC20.6968641114982579No Hit
GTGGACATCTTGGCTGAGGAG20.6968641114982579No Hit
TATCTTCTTAAATGGTCCCAAAA20.6968641114982579No Hit
ATTTCCTTTTCAGTCAAATCCGTGGATCCC20.6968641114982579No Hit
ACTCGACCAGAAATGCTGCTC20.6968641114982579No Hit
CACCACTACGATTAGAA20.6968641114982579No Hit
ACATCTTCACACAACGCCC20.6968641114982579No Hit
AACGCCCCTTCCACAACCAC20.6968641114982579No Hit
CTACAACTGGCGAACT20.6968641114982579No Hit
TCTTCTTCTACAACTGGCGAACTTGATCCC20.6968641114982579No Hit
CCCAGGTGAAGGCAG20.6968641114982579No Hit
CATCTGGGTGTTGGCCATTC20.6968641114982579No Hit
ACAACTGGCGAACTTGATCCCAAGG20.6968641114982579No Hit
CGTGGATCCCATCAACTCATCT20.6968641114982579No Hit
CTTATAAGCCTGCCCTCCAATCACCTCCGA20.6968641114982579No Hit
TAAGCCTGCCCTCCAATCACC20.6968641114982579No Hit
TTGGCAGGTATCAGCGCTGATAGAGTGGAA20.6968641114982579No Hit
CCGTGGATCCCATCAACTCATCTC20.6968641114982579No Hit
TTTCCGAGAAGAGAATGATTCCAGTC20.6968641114982579No Hit
CCACCCCCAACTCGAC20.6968641114982579No Hit
CTACAACTGGCGAACTTGATCCCAAGG20.6968641114982579No Hit
CAACGCCCCTTCCACAACCACCC20.6968641114982579No Hit
CAGTCAAATCCGTGGATCCCATCAACTC20.6968641114982579No Hit
TCGACTTATAAGCCTGCCCTCCAATCACC20.6968641114982579No Hit
TTCAGTCAAATCCGTGGATCCCATCAA20.6968641114982579No Hit
TGAAGGCAGCCATTTCGTCGATAATTTT20.6968641114982579No Hit
TTTCAGTCAAATCCGTGGATCCCATCAACT20.6968641114982579No Hit
TTTCCGAGACGAGAATGATTCCAGTC10.34843205574912894No Hit
TTCAGTCAAATCCGTGGAT10.34843205574912894No Hit
CTCTGGCATCTTCTTCTACAACTG10.34843205574912894No Hit
CTGAGGAGGCGTCTGC10.34843205574912894No Hit
GGCGTAATCCCGCGGATGGTAGC10.34843205574912894No Hit
AACGGATACGGCCTTAGAGGCGTTCA10.34843205574912894No Hit
ACTTATAAGCCTGCCCTCCAATC10.34843205574912894No Hit
ATAATTAAGTTGATAGTAGTTTCAATTAT10.34843205574912894No Hit
CATCTCTAAATTCTTCCCAGGAGAAGGCAG10.34843205574912894No Hit
CCATTTCGTCGATAA10.34843205574912894No Hit
TAGTAGTTTCAATTATTTATATTAGGAAC10.34843205574912894No Hit
ACAACGCCCCTTCCACAACCACCC10.34843205574912894No Hit
ACCAAATGTCCGAACC10.34843205574912894No Hit
AGCTTTGTCTTCGACTTATAAGCC10.34843205574912894No Hit
CAGTCAAATCCGTGGATCCCATCAACTCA10.34843205574912894No Hit
CCGCGGATGGTAGCGTCG10.34843205574912894No Hit
CAACTGGCGAACTTGATCCCAAGGAGACAA10.34843205574912894No Hit
TTCAGTCAAATCCGTGGATCCC10.34843205574912894No Hit
CAGGCGTAATCCCGCGGCTGGTAGCGTCG10.34843205574912894No Hit
AAGTCTGGATTTGATAGTAAGC10.34843205574912894No Hit
CAGGTGAAGGCAGCCATTTCGTCGATAAT10.34843205574912894No Hit
GGCGTTCAGGCGTAATCCCGCGGAGG10.34843205574912894No Hit
ACCACCCCCAACTCGACCAGAAATGCTGCT10.34843205574912894No Hit
CGACTTATAAGCCTGCCCTCCC10.34843205574912894No Hit
AAATGGTCCCAAAAATGT10.34843205574912894No Hit
CCCGCGGATGGTAGCGTCGC10.34843205574912894No Hit
TCCGTGGATCCCATCAACTCATCT10.34843205574912894No Hit
CCAGGTGAAGGCAGC10.34843205574912894No Hit
TGGTCTATAGATTAGTC10.34843205574912894No Hit
TCTCAGGATCTTCAGAACC10.34843205574912894No Hit
GCCTTAGAGGCGTTCAGGCGTAAT10.34843205574912894No Hit
ACACAACGCCCCTTCCACAACCA10.34843205574912894No Hit
TTCCGAGAAGAGAAT10.34843205574912894No Hit
ACCACCGCCCGCTCGAGCGAGTGCT10.34843205574912894No Hit
CAACCACCCCCAACTCGAC10.34843205574912894No Hit
ATGGTCCCAAAAATG10.34843205574912894No Hit
CTCTCTTCTCAGGATCTTCAGAACC10.34843205574912894No Hit
GATGGTAGCGTCGCAC10.34843205574912894No Hit
CATCTGTGGACATCTAGGCTGAGGAGGC10.34843205574912894No Hit
AGTGCTCGACCAAATGTCCGAACC10.34843205574912894No Hit
CTACGATTAGAACGGATACGGCCTTA10.34843205574912894No Hit
CAGCCATTTCGTCGATAATTTTAA10.34843205574912894No Hit
TCTTATTCTAGATGTTAGAGTACATAAA10.34843205574912894No Hit
GTAATCCCGCGGATGGTAGCGTCG10.34843205574912894No Hit
AGTGATACTCTTTCCACCCTTTG10.34843205574912894No Hit
CAACCACCCCCAACTC10.34843205574912894No Hit
GAAGTCTGGATTTGATAGTAAGC10.34843205574912894No Hit
TACAACTGGCGAACTTGATCCCAAGGAGAC10.34843205574912894No Hit
CAAATCCGTGGATCCCATCAACTCATCT10.34843205574912894No Hit
CTACGATTAGAACGGATACGGCCTT10.34843205574912894No Hit
ATAAGCCTGCCCTCCAATCACCTCCGA10.34843205574912894No Hit
CAAATCCGTGGATCCCATCAACTCATCTC10.34843205574912894No Hit
CACAACGCCCCTGCCACAACCACCCCC10.34843205574912894No Hit
GCTCGACCAAATGTCCGAACC10.34843205574912894No Hit
AGCGAGTGCTCGACCAAATGTCCGAAC10.34843205574912894No Hit
TTCTACAACTGGCGAACTTGATCCC10.34843205574912894No Hit
CGCTCGAGCGAGTGCTCGACCAAAT10.34843205574912894No Hit
AATCCGTGGATCCCATCAACTCA10.34843205574912894No Hit
TTATAAGCCTGCCCTC10.34843205574912894No Hit
AACCACCCCCAACTC10.34843205574912894No Hit
AGCCATTTCGTCGATAA10.34843205574912894No Hit
AGTCTGGATTTGATAGTAAGC10.34843205574912894No Hit
TTGTCTTCGACTTATAAGCCTGCCC10.34843205574912894No Hit
GCGTAATCCCGCGGATG10.34843205574912894No Hit
AGAGAATGATTCCAGTCATT10.34843205574912894No Hit
CTTAAATGGTCCCAAAAATGTGT10.34843205574912894No Hit
AACCTCCTTAGCCCGAGCTGTCATGTCAAA10.34843205574912894No Hit
CCTAGGGCTTAATACTAATGTTAG10.34843205574912894No Hit
TAGGCGTTCAGGCGTAATCCCGCGGATG10.34843205574912894No Hit
ATCAGACATCTGGGTGTTGGCCAT10.34843205574912894No Hit
CCTAGGGCTTAATACTAATGTTAGTTTG10.34843205574912894No Hit
ATCAGGCGTAATCCCGCGGATGGTA10.34843205574912894No Hit
TTCAGAACCTCCTTAGCCAGAAA10.34843205574912894No Hit
TTGAAGCCATCTGTGGACATCTTGGCT10.34843205574912894No Hit
AAATCCGTGGATCCCATCAACT10.34843205574912894No Hit
AAATCCGGGATAATTAAGTTGATA10.34843205574912894No Hit
GGCGAACTTGATCCCAAGGAGACAAATCT10.34843205574912894No Hit
CCAGGTGAAGGCAGCCATATCGTCGATAAT10.34843205574912894No Hit
CAGGCGTAATCCCGCGGATGGTAGCGT10.34843205574912894No Hit
CTGGCGAACTTGATCCCAAGG10.34843205574912894No Hit
TACAACTGGCGAACTTGATCCCAAGGA10.34843205574912894No Hit
CTCTGGCATCTTCTTCTACAACT10.34843205574912894No Hit
CTCTAAATTCTTCCCAGGTGAAG10.34843205574912894No Hit
CCGTGGATCCCATCAACTCATC10.34843205574912894No Hit
CTTTCCACCCTTTGCTGT10.34843205574912894No Hit
TCTTTCCACCCTTTGCT10.34843205574912894No Hit
ACAACTGGCGAACTTGATCCCAAGGA10.34843205574912894No Hit
GTGGACATCTTGGCTGAGGAGGCGTCT10.34843205574912894No Hit
TCTCAGGATCTTCAGAAC10.34843205574912894No Hit
CCACCCCCAACTCGACCAGAAATGCTGCT10.34843205574912894No Hit
CACATCTTTACACAACGCCCCTTCCA10.34843205574912894No Hit
AGAACGGATACGGCCTTAGAGG10.34843205574912894No Hit
ACCGCCCGCTCGAGCGAG10.34843205574912894No Hit
CTACGATTAGAACGGATACGGCCAAA10.34843205574912894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)