FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Sobemovirus_Segment_1.15-35nt.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Sobemovirus_Segment_1.15-35nt.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84
Sequences flagged as poor quality0
Sequence length15-30
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCAAAAACTCCTCCGCCCGC33.571428571428571No Hit
TACAGAGAACCGTCCGACAAC33.571428571428571No Hit
ACAGAGAACCGTCCGACAACA22.380952380952381No Hit
CCACGCGCGCTCGGGACTC22.380952380952381No Hit
CTCTCTGATAAGGCAAACC22.380952380952381No Hit
TCCGCAGCCGCTGTACCCACC22.380952380952381No Hit
CACCACTACGATTAGAA22.380952380952381No Hit
TCTCCGGTAGACCATGCAGCCC22.380952380952381No Hit
TTGCCCTCAAGAACAATCTCCT22.380952380952381No Hit
TATCCGCAGCCGCTGTACCCA11.1904761904761905No Hit
ACACACAGCCGGATTTCATGA11.1904761904761905No Hit
GCTCCGGACTCACGCCCATC11.1904761904761905No Hit
CGCTCGGGACTCCTGGT11.1904761904761905No Hit
AACGGATACGGCCTTAGAGGCGTTCA11.1904761904761905No Hit
TGGTATTGTCGTCGCCTACAC11.1904761904761905No Hit
CGTCGCCTACACTCAAT11.1904761904761905No Hit
CCGTTCTTCCGCGCCTCGGAC11.1904761904761905No Hit
CTCAATTCAGTCTGTACACCACTACGAT11.1904761904761905No Hit
GTCGTCGCCTACACTCA11.1904761904761905No Hit
ACCGCGAGGGCCACGC11.1904761904761905No Hit
AGGTGCCGTCCAATC11.1904761904761905No Hit
ATTGTCGTCGCCTACACTCAATTCAGTC11.1904761904761905No Hit
CTATTTCAGTCTGTACACCACTACGATT11.1904761904761905No Hit
ACGCGCGCTCGGGACTCCTGAG11.1904761904761905No Hit
AATGACGGAGCCAAACAGAGC11.1904761904761905No Hit
ACCGCGAGGGCCACG11.1904761904761905No Hit
GTATTGTCGTCGCCTACACTCAATTCAGTC11.1904761904761905No Hit
CACGCGCGCTCGGGACTCCTGGTATTGT11.1904761904761905No Hit
TTGCGACCTCGACCCGT11.1904761904761905No Hit
TGACCATATCCGTTGCGACCTCGACCCG11.1904761904761905No Hit
GCCACGCGCGCTCGGG11.1904761904761905No Hit
TACACTCAATTCAGTCTGTA11.1904761904761905No Hit
CACGTGACCGCGAGGGCCACGC11.1904761904761905No Hit
AACGCCTGCTCCAGTAACGCCC11.1904761904761905No Hit
CCTGGATCCTCTGAGGGGG11.1904761904761905No Hit
TTGCGACCTCGACCCG11.1904761904761905No Hit
ACGCGCGCTCGGGACTCCTGGTA11.1904761904761905No Hit
GCCTTAGAGGCGTTCAGGCGTAAT11.1904761904761905No Hit
GCCTGGATCCTCTGAGGGGG11.1904761904761905No Hit
TATTGTCGTCGCCTACACTCAATT11.1904761904761905No Hit
CTCGGGACTCCTGGT11.1904761904761905No Hit
AATTCAGTCTGTACACCACTACGAT11.1904761904761905No Hit
CTGGTATTGTCGTCG11.1904761904761905No Hit
CGCGCGCTCGGGACTCCTGG11.1904761904761905No Hit
TTGCGACCTCGACCCGTTCAC11.1904761904761905No Hit
CTACACTCAATTCAGTCTGTACACCACTAC11.1904761904761905No Hit
TCGTCACGTGACCGCGAGGGCCACGCGC11.1904761904761905No Hit
CAGAGAACCGTCCGACAACAT11.1904761904761905No Hit
GAGAACCGTCCGACAAC11.1904761904761905No Hit
GCCTTCGTAAATGAC11.1904761904761905No Hit
CCTGGTATTGTCGTCGC11.1904761904761905No Hit
TACAGAGAACCGTCCGACAA11.1904761904761905No Hit
CTACGATTAGAACGGATACGGCCTTA11.1904761904761905No Hit
TCACGTGACCGCGAGGGCCACGCG11.1904761904761905No Hit
ATTGTCGTCGCCTACACTCAAT11.1904761904761905No Hit
CGTAAAAAAGAATCC11.1904761904761905No Hit
AGAGAACCGTCCGAC11.1904761904761905No Hit
TCCGACACTGCTGCTTCCGAGTC11.1904761904761905No Hit
CACACATTCGCGTCCGACCGA11.1904761904761905No Hit
CACGTGACCGCGAGGGCCACGCGCGCTCG11.1904761904761905No Hit
GGGCCACGCGCGCTCGGGA11.1904761904761905No Hit
GTCTGTACACCACTACGATTAGAA11.1904761904761905No Hit
TCACTAGCGCCACCTGC11.1904761904761905No Hit
GCTCCGGACTCACGC11.1904761904761905No Hit
CGTCACGTGACCGCGAGGGCCACGCGCG11.1904761904761905No Hit
CGCGCTCGGGACTCC11.1904761904761905No Hit
GTCGTCGCCTACACTCAATTCAGTC11.1904761904761905No Hit
CCTGGTATTGTCGTCGCCTA11.1904761904761905No Hit
CCTACACTCAATTCAGT11.1904761904761905No Hit
CTACGATTAGAACGGATACGGCCTT11.1904761904761905No Hit
AGAACGGATACGGCCTTAGAGG11.1904761904761905No Hit
TCCGGACCAATGAGGTAATCAT11.1904761904761905No Hit
CTACGATTAGAACGGATACGGCCAAA11.1904761904761905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)