FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Sobemovirus_Segment_1.15-35nt.new.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Sobemovirus_Segment_1.15-35nt.new.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47
Sequences flagged as poor quality0
Sequence length20-35
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACAGAGAACCGTCCGACAAC36.382978723404255No Hit
CCGCAAAAACTCCTCCGCCCGC36.382978723404255No Hit
TCCGCAGCCGCTGTACCCACC24.25531914893617No Hit
ACAGAGAACCGTCCGACAACA24.25531914893617No Hit
TCTCCGGTAGACCATGCAGCCC24.25531914893617No Hit
TTGCCCTCAAGAACAATCTCCT24.25531914893617No Hit
AACGCCTGCTCCAGTAACGCCC12.127659574468085No Hit
TATCCGCAGCCGCTGTACCCA12.127659574468085No Hit
GTCGGCTACACTCAATTCAGTCTGTACACCACTA12.127659574468085No Hit
ACACACAGCCGGATTTCATGA12.127659574468085No Hit
GCTCCGGACTCACGCCCATC12.127659574468085No Hit
CCGCTAGGGCCACGCGCGCTCGGGACTCCTGG12.127659574468085No Hit
ACGCGCGCTCGGGACTCCTGGTA12.127659574468085No Hit
GCCTTAGAGGCGTTCAGGCGTAAT12.127659574468085No Hit
GCCCGGGACTCCTGGTATTGTCGTCGCCTACACTC12.127659574468085No Hit
GCCTGGATCCTCTGAGGGGG12.127659574468085No Hit
GTCGCCTACACTCAATTCAGTCTGTACACCACTAC12.127659574468085No Hit
TACTACACTCAATTCAGTCTGTACACCACTACGA12.127659574468085No Hit
TTGCGACCTCGACCCGTTCAC12.127659574468085No Hit
CTACACTCAATTCAGTCTGTACACCACTAC12.127659574468085No Hit
TGGTATTGTCGTCGCCTACAC12.127659574468085No Hit
CCGTTCTTCCGCGCCTCGGAC12.127659574468085No Hit
CAGAGAACCGTCCGACAACAT12.127659574468085No Hit
TACAGAGAACCGTCCGACAA12.127659574468085No Hit
TCACGTGACCGCGAGGGCCACGCG12.127659574468085No Hit
ATTGTCGTCGCCTACACTCAAT12.127659574468085No Hit
CTGGTATTGTCGTCGCCTACACTCAATTCAGTCT12.127659574468085No Hit
ACGCGCGCTCGGGACTCCTGAG12.127659574468085No Hit
CTCGTCGCCTACACTCAATTCAGTCTGTACACCAC12.127659574468085No Hit
TCCGACACTGCTGCTTCCGAGTC12.127659574468085No Hit
AATGACGGAGCCAAACAGAGC12.127659574468085No Hit
GTATTGTCGTCGCCTACACTCAATTCAGTC12.127659574468085No Hit
ACTACGATTAGAACGGATACGGCCTTAGAGGCGTT12.127659574468085No Hit
CTCAATTCAGTCTGTACACCACTACGATTAGAA12.127659574468085No Hit
CACACATTCGCGTCCGACCGA12.127659574468085No Hit
TGTCGTCGCCTACAATCAATTCAGTCTGTACA12.127659574468085No Hit
AGAACGGATACGGCCTTAGAGG12.127659574468085No Hit
TCCGGACCAATGAGGTAATCAT12.127659574468085No Hit
CTACGATTAGAACGGATACGGCCAAA12.127659574468085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)