FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Sobemovirus_segmet_2.15-35nt.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Sobemovirus_segmet_2.15-35nt.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69
Sequences flagged as poor quality0
Sequence length15-23
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAAATCGTGAACTCAGAA34.3478260869565215No Hit
GAAGACATCGCCCTCCACTCC34.3478260869565215No Hit
AAAGAGACCGTAAAAG34.3478260869565215No Hit
ACTCCTGCTGCACCAAG22.898550724637681No Hit
TCTTCCTCTTGCGCGCCTTCC22.898550724637681No Hit
ACCACTGGCGCGTCTGCAACC22.898550724637681No Hit
CGACTGTCACCGACGCCA22.898550724637681No Hit
GAGCCCATGAATCTGATCACCA22.898550724637681No Hit
GAAAAGAGACCGTAAAAGAGC22.898550724637681No Hit
AGAGCCCATGAATCTGATCACC22.898550724637681No Hit
AGAGCCCATGAATCTGATCACCA22.898550724637681No Hit
CGAAAAGAGACCGTAAAAGAGC22.898550724637681No Hit
CTGTGAGATCGAAATCC22.898550724637681No Hit
CATTCTTCCTCTTGCGCGCCT22.898550724637681No Hit
CCATTCTTCCTCTTGCGCGCC22.898550724637681No Hit
CAGGCAGAGGGTCAAACACGA22.898550724637681No Hit
AAAAGAGACCGTAAA11.4492753623188406No Hit
CTCCCAGACGATCGCACCCG11.4492753623188406No Hit
GCAGAGGGTCAAACACGAGAC11.4492753623188406No Hit
GACACCCCCTTCAGAAAA11.4492753623188406No Hit
GAGCCCATGAATCTGATCA11.4492753623188406No Hit
ATCGCGGGCCCATTCTTCCTC11.4492753623188406No Hit
TATGGCCCCCCCTCGGATTCAC11.4492753623188406No Hit
CGGCGTTTCCCCCTCCCAGAC11.4492753623188406No Hit
TCGAAATCCCAGTCAACACCG11.4492753623188406No Hit
GAGCCCATGAATCTGATCACC11.4492753623188406No Hit
CCATTCTTCCTCTTGCGCGCCA11.4492753623188406No Hit
CCCATGAATCTGATCA11.4492753623188406No Hit
CTCACGCGACACGGGGCCCAT11.4492753623188406No Hit
ATGGCCCCCCCTCGGATTCAT11.4492753623188406No Hit
GTTTGTCCAAAAGCAAAAGGGG11.4492753623188406No Hit
ATCGCAAGGTTCCCCGGGCT11.4492753623188406No Hit
TTCTTCCTCTTGCGCGCC11.4492753623188406No Hit
AATATGGCCCCCCCTCGGATT11.4492753623188406No Hit
ATCGCGGGCCCATTCTTC11.4492753623188406No Hit
ATACCACTGGCGCGTCTGCAA11.4492753623188406No Hit
GCGTCTGCAACCTCTCCCTACCA11.4492753623188406No Hit
TCTCAACCACCGCGTATCCAC11.4492753623188406No Hit
CTATGAACTCCTGCTGCACCA11.4492753623188406No Hit
GAGCCCATGAATCTGATCACACG11.4492753623188406No Hit
AGAGCCCATGAATCTGATCACA11.4492753623188406No Hit
CGGCGTTTCCCCCTCCCAGACC11.4492753623188406No Hit
AGAGGAGAAGACATCGCC11.4492753623188406No Hit
AAGAGACCGTAAAAGAGCCCA11.4492753623188406No Hit
AAGACATCGCCCTCCACTCC11.4492753623188406No Hit
CTTGGAGGGCCCCGGCAGCGC11.4492753623188406No Hit
ACTGGCGCGTCTGCAAC11.4492753623188406No Hit
CCGAAGAGGAGAAGACATCGCC11.4492753623188406No Hit
TATCCTCTGAAGACTC11.4492753623188406No Hit
GTGAGATCGAAATCCC11.4492753623188406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)