FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Tombus-like_virus_segment_1.15-35nt.forward-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Tombus-like_virus_segment_1.15-35nt.forward-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1344
Sequences flagged as poor quality0
Sequence length15-30
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAACTTCACCTACAAAACCTTGATGGCCC735.4315476190476195No Hit
ACGTTCTGAAGAGATTGCACATCAAAGG211.5625No Hit
AGGTCATATGTAGATGTCTCGAG161.1904761904761905No Hit
ACTTCACCTACAAAACCTTGATGGCCC130.9672619047619048No Hit
AGAGGCTGCAAGTACAGGCACGCGTGAGGA130.9672619047619048No Hit
GAGGCTGCAAGTACAGGCACGCGTGAGG110.818452380952381No Hit
AACTTCACCTACAAAACCTTGATGGCCC110.818452380952381No Hit
CAAGATAGAGAAGCTCAGCACCA110.818452380952381No Hit
CCTACAAGATGGACTCGAGCGGATTAC100.744047619047619No Hit
TGAAATGATACGCGGCCGAGC90.6696428571428571No Hit
AAAAGTGCACAAGTTGAGTAAGAAATATG90.6696428571428571No Hit
AGGTTCCCGGATTTGACAATTACTCGATTT90.6696428571428571No Hit
TGACTGTACAAAGGTAGCATAATAATTAGT90.6696428571428571No Hit
GAACTTCACCTACAAAACCTTGATGGCCC90.6696428571428571No Hit
TACAAGATGGACTCGAGCGGATTACGTCAA80.5952380952380952No Hit
GACGTTCTGAAGAGATTGCACATCAAAGG80.5952380952380952No Hit
CACCAAGATAGAGAAGCTCAGCACTAGCAA80.5952380952380952No Hit
CGAAGCAGATCACTCTACCTTTGATGCCCC80.5952380952380952No Hit
GAGCCTACATACACCGTCGAACAAAT80.5952380952380952No Hit
TCGGTGAACTCACTACTCAGAAATTGCA70.5208333333333333No Hit
CTACAAGATGGACTCGAGCGGATTACGT70.5208333333333333No Hit
CAACCCGGGCCTCCCGAACTTCACCTAAA70.5208333333333333No Hit
CGTTCTGAAGAGATTGCACATCAAAGG70.5208333333333333No Hit
CAATGCAGAAGTCGCGGGCAACCA70.5208333333333333No Hit
ATCCACGAGAATAAGCTGCGTTTGATTGAA70.5208333333333333No Hit
TACAAGATGGACTCGAGCGGA70.5208333333333333No Hit
GGGCCTCCCGAACTTCACCTACAAAA60.4464285714285714No Hit
TATCTCGGCTCGAGTTTCCCCGTTCACCA60.4464285714285714No Hit
TACAAGATGGACTCGAGCGGATTAC60.4464285714285714No Hit
AGATGGACTCGAGCGGATTAC60.4464285714285714No Hit
CTTCACCTACAAAACCTTGATGGCCC60.4464285714285714No Hit
CTACAAGATGGACTCGAGCGGATTACG60.4464285714285714No Hit
CCTACAAAACCTTGATGGCCC60.4464285714285714No Hit
TGGTGGAACCCACTGACATGGCATAAGAA60.4464285714285714No Hit
CTACAAGATGGACTCGAGCGGATTA60.4464285714285714No Hit
CAGGCGCTTGAACATGAGGAA60.4464285714285714No Hit
AGGTCATATGTAGATGTCTCGAGAGATACA60.4464285714285714No Hit
ATTTTCACGATTGCTAGGACCCAGCCGT60.4464285714285714No Hit
ACGAGCCTACATACACCGTCGAACAAAT50.3720238095238095No Hit
TACAAGATGGACTCGAGCGGATTACG50.3720238095238095No Hit
AGCAGATCACTCTACCTTTGA50.3720238095238095No Hit
TTCACCTACAAAACCTTGATGGCCC50.3720238095238095No Hit
CAAGATGGACTCGAGCGGATTACG50.3720238095238095No Hit
CTAGGTTCCCGGATTTGACAA50.3720238095238095No Hit
CTATTACTATCCCCAAGATCGCACCAC50.3720238095238095No Hit
CTCAATCGTATAAAAGGACTTGGCAAAG50.3720238095238095No Hit
ACTCAATCGTATAAAAGGACTTGGCAAAG50.3720238095238095No Hit
AGAGAAGCTCAGCACTAGCACCA50.3720238095238095No Hit
GAGGCTGCAAGTACAGGCACGCGTGAGGA50.3720238095238095No Hit
TGTTGACACTTCACTTGGCAATTCCCTC50.3720238095238095No Hit
CACATTTTCACGATTGCTAGGACCCAGCCG50.3720238095238095No Hit
CAAGATGGACTCGAGCGGATTA50.3720238095238095No Hit
TACCTTGACCGAACTCATGTGGCCGATC50.3720238095238095No Hit
CGAGCCTACATACACCGTCGAACAAAT50.3720238095238095No Hit
AAGGCTCCTCACCCGTTCCATGTTTGTA50.3720238095238095No Hit
GTTCCCGGATTTGACAATTACTCGATTTTG50.3720238095238095No Hit
ACCCGGGCCTCCCGAACTTCACCTACA50.3720238095238095No Hit
CTACCTTTGATGCCCATGTCACTCGCGA50.3720238095238095No Hit
AACGGTACGAGGTCATATGT50.3720238095238095No Hit
CTCCCGAACTTCACCTACAAAACCTT50.3720238095238095No Hit
CGGTGAACTCACTACTCAGAAATTGCA50.3720238095238095No Hit
AGGCTGCAAGTACAGGCACGCGTGAGG50.3720238095238095No Hit
TATTACTATCCCCAAGATCGCACCACC50.3720238095238095No Hit
GAGCCTACATACACCGTCGAACAAA40.2976190476190476No Hit
TCTCACATTTTCACGATTGCTAGGACCCA40.2976190476190476No Hit
GCAATGAGACAGGCGCTTGAACATGAGGA40.2976190476190476No Hit
CCTACGGCTGAGGAGCCAAAGTATCGGGAA40.2976190476190476No Hit
AATTCTATTACTATCCCCAAGATCGCAC40.2976190476190476No Hit
GTGAAATGATACGCGGCCGACC40.2976190476190476No Hit
TAAAGGCTTGTATGAAT40.2976190476190476No Hit
TGGTGGAACCCACTGACATGGC40.2976190476190476No Hit
AGCGTCGCGCAGCAGCAATGAGACAGGC40.2976190476190476No Hit
GGTGGAACCCACTGACATGGCA40.2976190476190476No Hit
CAACCCGGGCCTCCCGAACTTCACCTAAAA40.2976190476190476No Hit
TTCTATTACTATCCCCAAGATCGCACCACC40.2976190476190476No Hit
ATGGACTCGAGCGGATTACGTCA40.2976190476190476No Hit
GCCATCGAGCTGAGAGAGCGTCGCGCAGC40.2976190476190476No Hit
AAGGGCAATCATCTCGACATTGGTGCA40.2976190476190476No Hit
ATATGTAGATGTCTCGAG40.2976190476190476No Hit
TCGAGAGGCTGCAAGTACAGGCACGCGTGA40.2976190476190476No Hit
CGAAAATTCTATTACTATCCCCAAGATCGC40.2976190476190476No Hit
CGAACTTCACCTACAAAACCTTGATGGCC40.2976190476190476No Hit
CAAGATGGACTCGAGCGGATTACGT40.2976190476190476No Hit
TTCCCGGCTATCCTCGATAATC40.2976190476190476No Hit
ATGAGACAGGCGCTTGAACATGAGGAA40.2976190476190476No Hit
TCTATTACTATCCCCAAGATCGCACCACC40.2976190476190476No Hit
GTATCAAACGAGCCTACATACACCG40.2976190476190476No Hit
TACAAGATGGACTCGAGCGGATTACGT40.2976190476190476No Hit
CCGGCTATCCTCGATAATCGAAAA40.2976190476190476No Hit
AGTCGCGGGCAACCA40.2976190476190476No Hit
TACTCGATTTTGACACTTAGCATGGCTCT40.2976190476190476No Hit
CCCGGGCCTCCCGAACTTCACCTACAAAA40.2976190476190476No Hit
TGACTGTACAAAGGTAGCATAATAAAAAA40.2976190476190476No Hit
ACGGCTGAGGAGCCAAAGTATCGGGAAAAT40.2976190476190476No Hit
CTGTACAAAGGTAGCATAATAATTAGT40.2976190476190476No Hit
GGCAACCCGGGCCTCCCGAACTTCACC40.2976190476190476No Hit
TTTTAATTAAAGGCTTGTATGAATGGTT30.2232142857142857No Hit
ATGAAATGTGTCCAACCATGTATGCAGCCC30.2232142857142857No Hit
AGCCTACATACACCGTCGAACA30.2232142857142857No Hit
CCAAGATAGAGAAGCTCAGCACTAGCA30.2232142857142857No Hit
CACGCGTGAGGAGAATGGAAGCCG30.2232142857142857No Hit
CTACATACACCGTCGAACAAAT30.2232142857142857No Hit
AGCAGATCACTCTACCTTTGATGCCCA30.2232142857142857No Hit
TTTTTGAGGATGACACACACC30.2232142857142857No Hit
AGCCTACATACACCGTCGAAC30.2232142857142857No Hit
CTGAGGAGCCAAAGTATCGGGAAAATAGG30.2232142857142857No Hit
CTGTGTGAAATGATACGCGGCCGA30.2232142857142857No Hit
GACACTTAGCATGGCTCTGCGA30.2232142857142857No Hit
AGCCTACATACACCGTCGAACAA30.2232142857142857No Hit
GCCGTTGTCTGGTGGAACCC30.2232142857142857No Hit
GAGCCTACATACACCGTCGAACAA30.2232142857142857No Hit
AAAAACTCAATCGTATAAAAGGACTTGGC30.2232142857142857No Hit
CTTAGGTAAATAGCTGCAGTATTATGAC30.2232142857142857No Hit
CGATTGCTAGGACCCAGCCGT30.2232142857142857No Hit
CCGAACTTCACCTACAAAACCTTGATGGCC30.2232142857142857No Hit
CTCACTACTCAGAAATTGCACCA30.2232142857142857No Hit
GTTCCCGGATTTGACAATTACTCG30.2232142857142857No Hit
ATTGTATTTAAAGTGATCTAGGCCAAA30.2232142857142857No Hit
TTTCCCGGCTATCCTCGATAATCGAAAAT30.2232142857142857No Hit
CCACCACTTGCTATATAGTGCATCACCA30.2232142857142857No Hit
CAGGCGCTTGAACATGAGGAAGC30.2232142857142857No Hit
TCACCAACCGTCACGC30.2232142857142857No Hit
AACCCGGGCCTCCCGAACTTCACCTA30.2232142857142857No Hit
ATAACAAGTTGCTCCGGACGTTGTCTA30.2232142857142857No Hit
TGTTGACACTTCACTTGGCAATTCCCTCA30.2232142857142857No Hit
TCTCACATTTTCACGATTGCTAGGACCCAG30.2232142857142857No Hit
TAATTAAAGGCTTGTATGAATGGT30.2232142857142857No Hit
TTCCCGGCTATCCTCGAT30.2232142857142857No Hit
TTAATTAAAGGCTTGTATGAATGGTTG30.2232142857142857No Hit
GCAACCCGGGCCTCCCGAACTTCACCTAAA30.2232142857142857No Hit
ACCTACAAAACCTTGATGGCCC30.2232142857142857No Hit
AAGATGGACTCGAGCGGATTA30.2232142857142857No Hit
ATAGTGCATCACCGAACCAAGACA30.2232142857142857No Hit
GGTCATATGTAGATGTCTCGAGAGATAC30.2232142857142857No Hit
CAAATATTGTCTATTCGGAACCACAAT30.2232142857142857No Hit
ACGATTGCTAGGACCCAGCCG30.2232142857142857No Hit
TCCTACAAGATGGACTCGAGCGGATTACGT30.2232142857142857No Hit
CGGGCCTCCCGAACTTCACCTACAAAAC30.2232142857142857No Hit
AGGACTTGGCAAAGTGAGCAG30.2232142857142857No Hit
CCTTGACCGAACTCATGTGGC30.2232142857142857No Hit
CTACAAAACCTTGATGGCCC30.2232142857142857No Hit
GCAACCCGGGCCTCCCGAACTTCACCT30.2232142857142857No Hit
TATGTAGATGTCTCGAG30.2232142857142857No Hit
CTGTGTGAAATGATACGCGGCCGAGCT30.2232142857142857No Hit
ACCTTGACCGAACTCATGTGG30.2232142857142857No Hit
AAGGCTCCTCACCCGTTCCATGTTT30.2232142857142857No Hit
ACAAGATGGACTCGAGCGGATTACGTCAAT30.2232142857142857No Hit
GTGGAACCCACTGACATGGCATA30.2232142857142857No Hit
GCCTACATACACCGTCGAACAAATATTG30.2232142857142857No Hit
CACCTACAAAACCTTGATGGCCC30.2232142857142857No Hit
AAGATGGACTCGAGCGGATTACGT30.2232142857142857No Hit
TAGGACCCAGCCGTAAC30.2232142857142857No Hit
TGCAGAAGTCGCGGGCAACCA30.2232142857142857No Hit
TGTGAAATGATACGCGGCCGA30.2232142857142857No Hit
AACTAGGTTCCCGGATTTGAC30.2232142857142857No Hit
ATGGACTCGAGCGGAT30.2232142857142857No Hit
CAAGATAGAGAAGCTCAGCACC30.2232142857142857No Hit
TGACCGAACTCATGTGGCCGA30.2232142857142857No Hit
CGGGCCTCCCGAACTTCACCTAC30.2232142857142857No Hit
TACAAGATGGACTCGAGCGGATTA30.2232142857142857No Hit
CACTGTGTGAAATGATACGCGG30.2232142857142857No Hit
TGGTGGAACCCACTGACATGGCAA30.2232142857142857No Hit
GAGGAAGCGATCGAGAGGCTGCAAGTACA30.2232142857142857No Hit
TCTGGTGGAACCCACTGACATGGCA30.2232142857142857No Hit
GATGGACTCGAGCGGATTAC20.1488095238095238No Hit
CCTACAAGATGGACTCGAGCGGATTA20.1488095238095238No Hit
GGACGTTCTGAAGAGATTGCACATCAAAGG20.1488095238095238No Hit
TCACATTTTCACGATTGCTAGGACCCAGC20.1488095238095238No Hit
CAGATCACTCTACCTTTGATGCCCTC20.1488095238095238No Hit
CCATGTCACTCGCGATTTTTTGA20.1488095238095238No Hit
CCGTTGCCGCTGCCTTCACCA20.1488095238095238No Hit
GACGTTCTGAAGAGATTGCACCA20.1488095238095238No Hit
TCACCTACAAAACCTTGATGGCCC20.1488095238095238No Hit
ACGCGTGAGGAGAATGGAAGCCGAGGA20.1488095238095238No Hit
TACTATCCCCAAGATCGCACCA20.1488095238095238No Hit
CGGTGAACTCACTACTCAGAAATTGCAA20.1488095238095238No Hit
CACTCTACCTTTGATGCCCATGTCACTC20.1488095238095238No Hit
CTGAAGAGATTGCACATCAAAGGAGAC20.1488095238095238No Hit
CGTATCGACGACCGCACCAAG20.1488095238095238No Hit
CACCAAGATAGAGAAGCTCAGCGA20.1488095238095238No Hit
TTTGGAAAGGGCAAT20.1488095238095238No Hit
GATCACACAACTAGGTTCCCGGATTTGA20.1488095238095238No Hit
AAAGTATCGGGAAAATAGGGGCACC20.1488095238095238No Hit
AAAATATTTTTGGTATAACCTGCTCA20.1488095238095238No Hit
CAACCCGGGCCTCCCGAACTTCACCTACAA20.1488095238095238No Hit
CCCGGATTTGACAATTACTCGATTT20.1488095238095238No Hit
TGGTGGAACCCACTGACATGGCATAAGACA20.1488095238095238No Hit
TGAGACAGGCGCTTGAACATG20.1488095238095238No Hit
TCCCGGATTTGACAATTACTC20.1488095238095238No Hit
CTATCCCCAAGATCGCACCAC20.1488095238095238No Hit
TTTCCCCGTTCACCAAG20.1488095238095238No Hit
GCAAAAGTGCACAAGTTGAGTAAG20.1488095238095238No Hit
ATTGTCTATTCGGAACCACAATCGCT20.1488095238095238No Hit
ACGGCTGAGGAGCCAAAGTATCGGGAAA20.1488095238095238No Hit
TTAATTAAAGGCTTGTATGAATGGTT20.1488095238095238No Hit
AGTCCCTTGACAAGACTTGGAAAG20.1488095238095238No Hit
TGAGAATAAGCTGCGTTTGATTGAA20.1488095238095238No Hit
TTCACCTACAAAACCTTGATGGCCCC20.1488095238095238No Hit
TTAATCATGTATCAAACGAGCCTAC20.1488095238095238No Hit
ATGAGGAAGCGATCGAGAGGCC20.1488095238095238No Hit
TTCCCGGATTTGACAATTACTCGATTTTG20.1488095238095238No Hit
CTTCACTTGGCAATTCCCTCATCAACTAC20.1488095238095238No Hit
TGGAGATGTTGACACTTCACTTGGCAATTC20.1488095238095238No Hit
ACGGCTGAGGAGCCAAAGTATCGGGA20.1488095238095238No Hit
ATTACTATCCCCAAGATCGCACCACC20.1488095238095238No Hit
GAGAACATAGGAGCCATTGAGCGCGA20.1488095238095238No Hit
TGCTAGGACCCAGCCGTAACTG20.1488095238095238No Hit
TTTCACGATTGCTAGGACCCAGCCGTA20.1488095238095238No Hit
GTACAAGATGGACTCGAGCGGAT20.1488095238095238No Hit
AAGCGAGCCATCTATTTG20.1488095238095238No Hit
GTACAAGGCTCCTCGCATGAT20.1488095238095238No Hit
AAGATGGACTCGAGCGGATTACGTCAC20.1488095238095238No Hit
AGATGTTGACACTTCACTTGGCAATTCC20.1488095238095238No Hit
TCCGCTGTTCTTCGT20.1488095238095238No Hit
CCTACAAGATGGACTCGAGCGGATTACGT20.1488095238095238No Hit
CAACTAGGTTCCCGGATTTGAA20.1488095238095238No Hit
CTGGTGGAACCCACTGACATGGCACC20.1488095238095238No Hit
AGGCTGCAAGTACAGGCACGCGT20.1488095238095238No Hit
CGATTGCTAGGACCCAGCCGTAA20.1488095238095238No Hit
TCGAGAGGCTGCAAGTACAGGCACGCGTGG20.1488095238095238No Hit
GTATTATGACTGTACAAAGGTAGC20.1488095238095238No Hit
CATGTCACTCGCGATTTTTTG20.1488095238095238No Hit
ATGGACTCGAGCGGATTACGTA20.1488095238095238No Hit
CAACCAACGTACACAAGGTCGACCA20.1488095238095238No Hit
GCAGATCACTCTACCTTTGATGCCCACC20.1488095238095238No Hit
TGAAATGATACGCGGCCGAG20.1488095238095238No Hit
AAAAGTGCACAAGTTGAGTAAG20.1488095238095238No Hit
AGGCTGCAAGTACAGGCACGCGTGAGGA20.1488095238095238No Hit
TACAGGCACGCGTGAGGAGAA20.1488095238095238No Hit
TCATATGTAGATGTCTCGAG20.1488095238095238No Hit
GTATTATGACTGTACAAAGGTAGCACCCA20.1488095238095238No Hit
AAATTCTATTACTATCCCCAAGATCGCAC20.1488095238095238No Hit
CTACAAGATGGACTCGAGCGGCA20.1488095238095238No Hit
GCAGATCACTCTACCTTTGATGCCCAGAA20.1488095238095238No Hit
ACTCACTACTCAGAAATTGCA20.1488095238095238No Hit
AGTGCATCACCGAACCAAGACAATCTC20.1488095238095238No Hit
TTTTGAAGGACGTTCTGAAGAGATTGCACA20.1488095238095238No Hit
TGGACTCCCGGCTCGTGAGAA20.1488095238095238No Hit
TTGCACATCAAAGGAGAC20.1488095238095238No Hit
CTTCACCAACCGTCACGCTGCAA20.1488095238095238No Hit
AGCCTACATACACCGTCGAACAAAT20.1488095238095238No Hit
TTTAATTAAAGGCTTGTATGAATGGT20.1488095238095238No Hit
TACAAGATGGACTCGAGCGGATTACGTC20.1488095238095238No Hit
CGAGCCTACATACACCGTCGAACAA20.1488095238095238No Hit
CAGATCACTCTACCTTTGATGCCCA20.1488095238095238No Hit
CACTCTACCTTTGATGCCCATGTCACTCGC20.1488095238095238No Hit
GAGATGTTGACACTTCACTTGGCAATTCC20.1488095238095238No Hit
TGGTGGAACCCACTGACATGGCATAAG20.1488095238095238No Hit
CGGCTGAGGAGCCAAAGTATCGGGAAAATA20.1488095238095238No Hit
TATAGTGCATCACCGAACCAAGAC20.1488095238095238No Hit
CCCGGCTATCCTCGATAATCGAAA20.1488095238095238No Hit
TGCTTAGGTAAATAGCTGCAGTATTATGAC20.1488095238095238No Hit
ACAAGATGGACTCGAGCGGATT20.1488095238095238No Hit
CGGTGAACTCACTACTCAGAAATTGCAAG20.1488095238095238No Hit
AGATGGACTCGAGCGGATTACA20.1488095238095238No Hit
TCGTGAGAACATAGGAGCCACC20.1488095238095238No Hit
CTAGGTTCCCGGATTTGACAAAA20.1488095238095238No Hit
AATTAAAGGCTTGTATGAATGGT20.1488095238095238No Hit
TCTATTACTATCCCCAAGATCGCACCA20.1488095238095238No Hit
TACTGTATTTCCCGGCTATCC20.1488095238095238No Hit
CATTAATCATGTATCAAACGAGCCTAC20.1488095238095238No Hit
GGTCATATGTAGATGTCTCGAG20.1488095238095238No Hit
CGAGCCTACATACACCGTCGAACAAATA20.1488095238095238No Hit
CATTAACCTAGGATCACACAACT20.1488095238095238No Hit
GCAGAAGTCGCGGGCAACCA20.1488095238095238No Hit
GGTAAATAGCTGCAGTATTATGAC20.1488095238095238No Hit
TTGTCACACCCTTATCACATACA20.1488095238095238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)