FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Tombus-like_virus_segment_1.15-35nt.new.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Tombus-like_virus_segment_1.15-35nt.new.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110
Sequences flagged as poor quality0
Sequence length20-35
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGAGTAATTGTCAAATCCGGGAACCTAGTTGTGT1210.909090909090908No Hit
GAATTATAGACAAGATTGGTACGACAAAA54.545454545454546No Hit
CTAGTGCTGAGCTTCTCTATCTTGGTGACCA54.545454545454546No Hit
CCATGTAGTCCCCAACGAGAG32.727272727272727No Hit
GAATTATAGACAAGATTGGTACGA32.727272727272727No Hit
AATGTCGAGATGATTGCCCTTCTAA32.727272727272727No Hit
CGCGGGAATTATAGACAAGACC32.727272727272727No Hit
CGATTGTGGTTCCGAATAGAC32.727272727272727No Hit
AGCTGTGGCGCTATCGTACTC32.727272727272727No Hit
CGCGACGCTCTCTCAGCTCGA32.727272727272727No Hit
TGGCTCCTATGTTCTCACGAG21.8181818181818181No Hit
TCTTACTCAACTTGTGCACTTC21.8181818181818181No Hit
ATGTAGTCCCCAACGAGAGTA21.8181818181818181No Hit
ATTTTCCCGATACTTTGGCTC21.8181818181818181No Hit
GCGTGACGGTTGGTGAAGGCAAT21.8181818181818181No Hit
ACGAAGAACAGCGGATTGGCC21.8181818181818181No Hit
CATGTAGTCCCCAACGAGAGT21.8181818181818181No Hit
TCCATGTAGTCCCCAACGAGAG21.8181818181818181No Hit
TCTTGGTGAACGGGGAAACTC21.8181818181818181No Hit
CTCGGCTTCCATTCTCCTCAC21.8181818181818181No Hit
TTTCTAAGGTGCCTATAACAGC10.9090909090909091No Hit
ATGGCTCCTATGTTCTCACGAG10.9090909090909091No Hit
CTCGGCCGCGTATCATTTCAC10.9090909090909091No Hit
TGATTAATGTATCTCTCGAGACC10.9090909090909091No Hit
CGAGGATAGCCGGGAAATACAC10.9090909090909091No Hit
TATTCCATGTAGTCCCCAACGAGAGT10.9090909090909091No Hit
GAGAATATCCAACACCGGCTA10.9090909090909091No Hit
TGCCCCTATTTTCCCGATACT10.9090909090909091No Hit
GGGGTTTTCCGAGATAGACAG10.9090909090909091No Hit
CAAAGTGTACATCTCTACCCAC10.9090909090909091No Hit
CGGCCGCGTATCATTTCACACC10.9090909090909091No Hit
TGTAGAAAGCATGGTCCTCGG10.9090909090909091No Hit
CGGAGCAACTTGTTATGGTACCA10.9090909090909091No Hit
ATGCTATCATCGCCGTTGACTATAA10.9090909090909091No Hit
AAGATCTGTGGCATGCTGTACC10.9090909090909091No Hit
TTAATGTCAAAATCGAGATTG10.9090909090909091No Hit
GCTATCATCGCCGTTGACTACC10.9090909090909091No Hit
GTAGAAAGCATGGTCCTCGG10.9090909090909091No Hit
GATGCTATCATCGCCGTTGACC10.9090909090909091No Hit
TCCCGATACTTTGGCTCCTCA10.9090909090909091No Hit
AGGCATATTTCTTACTCAAC10.9090909090909091No Hit
ATGTCAAACAGCCTCCGAGGA10.9090909090909091No Hit
CCACCAGACAACGGCATCCACCA10.9090909090909091No Hit
CACACTATGGAGTCCACTTACC10.9090909090909091No Hit
GATGCTATCATCGCCGTTGACTATAA10.9090909090909091No Hit
AGAGTGATCTGCTTCGGTATAC10.9090909090909091No Hit
TACAAGCACTATACGAGGCATGGTTGGACTCTCCG10.9090909090909091No Hit
TGTCCCTCGCCTGTATCATGCC10.9090909090909091No Hit
CGCAGAGATTGTAGAAAGCAT10.9090909090909091No Hit
TCCACCAGACAACGGCATCCACC10.9090909090909091No Hit
ATGGCTCCTATGTTCTCACGA10.9090909090909091No Hit
GTAGAAAGCATGGTCCTCGGC10.9090909090909091No Hit
CTAGTGCTGAGCTTCTCTATCTTGGTGACC10.9090909090909091No Hit
CGAGATTGTCTTGGTTCGGTGTAAA10.9090909090909091No Hit
GCACCAATGTCGAGATGATTG10.9090909090909091No Hit
CGATTGTGGTTCCGAATAGACA10.9090909090909091No Hit
GTGTTCCATGTAGTCCCCAACGAGAG10.9090909090909091No Hit
ACCAATGTCGAGATGATTGCCCA10.9090909090909091No Hit
ACAAAACTCGACCTTGTGTACC10.9090909090909091No Hit
TCCAGCTGTGGCGCTATCGTA10.9090909090909091No Hit
GCCATGTCAGTGGGTTCCACC10.9090909090909091No Hit
CGCCTGTCTCATTGCTGCTGC10.9090909090909091No Hit
TCTTGTAGGATGACGGAGGAA10.9090909090909091No Hit
TGTACTTGCAGCCTCTCGATC10.9090909090909091No Hit
CTCAGCTCGATGGCATCCACG10.9090909090909091No Hit
TTTTCCCGATACTTTGGCTCCA10.9090909090909091No Hit
TATCATCGCCGTTGACTATAAA10.9090909090909091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)