FastQCFastQC Report
Mon 28 Nov 2022
S1_Sudafrica.Tombus-like_virus_segment_1.15-35nt.reverse-mapped.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameS1_Sudafrica.Tombus-like_virus_segment_1.15-35nt.reverse-mapped.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106
Sequences flagged as poor quality0
Sequence length15-30
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTATAGACAAGATTGGTACGACAAAA54.716981132075472No Hit
ATCACCTGTCGCAAGT43.7735849056603774No Hit
CCATGTAGTCCCCAACGAGAG32.8301886792452833No Hit
GAATTATAGACAAGATTGGTACGA32.8301886792452833No Hit
AATGTCGAGATGATTGCCCTTCTAA32.8301886792452833No Hit
CGCGGGAATTATAGACAAGACC32.8301886792452833No Hit
CGATTGTGGTTCCGAATAGAC32.8301886792452833No Hit
AGCTGTGGCGCTATCGTACTC32.8301886792452833No Hit
CGCGACGCTCTCTCAGCTCGA32.8301886792452833No Hit
TGGCTCCTATGTTCTCACGAG21.8867924528301887No Hit
TCTTACTCAACTTGTGCACTTC21.8867924528301887No Hit
ATGTAGTCCCCAACGAGAGTA21.8867924528301887No Hit
GTAGAAAGCATGGTCCTCGG21.8867924528301887No Hit
ATTTTCCCGATACTTTGGCTC21.8867924528301887No Hit
GCGTGACGGTTGGTGAAGGCAAT21.8867924528301887No Hit
ACGAAGAACAGCGGATTGGCC21.8867924528301887No Hit
CATGTAGTCCCCAACGAGAGT21.8867924528301887No Hit
CGCGGGAATTATAGACA21.8867924528301887No Hit
TCCATGTAGTCCCCAACGAGAG21.8867924528301887No Hit
TCTTGGTGAACGGGGAAACTC21.8867924528301887No Hit
CTCGGCTTCCATTCTCCTCAC21.8867924528301887No Hit
TTTCTAAGGTGCCTATAACAGC10.9433962264150944No Hit
ATGGCTCCTATGTTCTCACGAG10.9433962264150944No Hit
CTCGGCCGCGTATCATTTCAC10.9433962264150944No Hit
TGATTAATGTATCTCTCGAGACC10.9433962264150944No Hit
CGAGGATAGCCGGGAAATACAC10.9433962264150944No Hit
TATTCCATGTAGTCCCCAACGAGAGT10.9433962264150944No Hit
GAGAATATCCAACACCGGCTA10.9433962264150944No Hit
GATTGGACTCTCCGC10.9433962264150944No Hit
TGCCCCTATTTTCCCGATACT10.9433962264150944No Hit
GGGGTTTTCCGAGATAGACAG10.9433962264150944No Hit
CAAAGTGTACATCTCTACCCAC10.9433962264150944No Hit
CGGCCGCGTATCATTTCACACC10.9433962264150944No Hit
TGTAGAAAGCATGGTCCTCGG10.9433962264150944No Hit
CGGAGCAACTTGTTATGGTACCA10.9433962264150944No Hit
ATGCTATCATCGCCGTTGACTATAA10.9433962264150944No Hit
AAGATCTGTGGCATGCTGTACC10.9433962264150944No Hit
CAGCCGTAGGTCACAC10.9433962264150944No Hit
TTAATGTCAAAATCGAGATTG10.9433962264150944No Hit
CTGTCGCAAGTATTCCATGTAGTCCCCA10.9433962264150944No Hit
GCTATCATCGCCGTTGACTACC10.9433962264150944No Hit
GATGCTATCATCGCCGTTGACC10.9433962264150944No Hit
GGGAGGCCCGGGTTG10.9433962264150944No Hit
TCCCGATACTTTGGCTCCTCA10.9433962264150944No Hit
AGGCATATTTCTTACTCAAC10.9433962264150944No Hit
ATGTCAAACAGCCTCCGAGGA10.9433962264150944No Hit
GTTGGTTGCCCGCGACTTC10.9433962264150944No Hit
CCACCAGACAACGGCATCCACCA10.9433962264150944No Hit
CACACTATGGAGTCCACTTACC10.9433962264150944No Hit
GATGCTATCATCGCCGTTGACTATAA10.9433962264150944No Hit
AGAGTGATCTGCTTCGGTATAC10.9433962264150944No Hit
TCCATGTAGTCCCCAACG10.9433962264150944No Hit
GAAGTTCGGGAGGCC10.9433962264150944No Hit
TGTCCCTCGCCTGTATCATGCC10.9433962264150944No Hit
CGCAGAGATTGTAGAAAGCAT10.9433962264150944No Hit
TCCACCAGACAACGGCATCCACC10.9433962264150944No Hit
ATGGCTCCTATGTTCTCACGA10.9433962264150944No Hit
GTAGAAAGCATGGTCCTCGGC10.9433962264150944No Hit
CTAGTGCTGAGCTTCTCTATCTTGGTGACC10.9433962264150944No Hit
CGAGATTGTCTTGGTTCGGTGTAAA10.9433962264150944No Hit
GCACCAATGTCGAGATGATTG10.9433962264150944No Hit
CGATTGTGGTTCCGAATAGACA10.9433962264150944No Hit
GTGTTCCATGTAGTCCCCAACGAGAG10.9433962264150944No Hit
ACCAATGTCGAGATGATTGCCCA10.9433962264150944No Hit
ACAAAACTCGACCTTGTGTACC10.9433962264150944No Hit
TCCAGCTGTGGCGCTATCGTA10.9433962264150944No Hit
GCCATGTCAGTGGGTTCCACC10.9433962264150944No Hit
CGCCTGTCTCATTGCTGCTGC10.9433962264150944No Hit
TCTTGTAGGATGACGGAGGAA10.9433962264150944No Hit
TGTACTTGCAGCCTCTCGATC10.9433962264150944No Hit
CTCAGCTCGATGGCATCCACG10.9433962264150944No Hit
TTTTCCCGATACTTTGGCTCCA10.9433962264150944No Hit
TATCATCGCCGTTGACTATAAA10.9433962264150944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)