FastQCFastQC Report
Mon 20 Feb 2023
prunned.4.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenameprunned.4.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22766151
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAGTTTGGCTTGGTGCTTTGCAAATTTGCTGAGCTTCTACCTCATAGG442500.19436750639139658No Hit
ATCGTGGTGGAGGTGGTGGTGATCGTGGTGGTGGAGGTGGTGGGCATGGT351500.15439588360808112No Hit
GTCGTGGTCGTGGTCGTGGTCTTGGAGGAGGGCATGGATATGGTCGCGGA264250.1160714430823199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)