FastQCFastQC Report
Mon 20 Feb 2023
prunned.4.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenameprunned.4.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22766151
Sequences flagged as poor quality0
Sequence length67-100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAATCATGTTTTGCAGCCACCACCAAGTGATCGTGGCTAGAGAAGTC446850.1962782378101595No Hit
AAAAAAACAAAAACGTTTCTAATCTTTTTCACTCATTCCATGGCTCGTTC335380.1473151961436081No Hit
CAACTATGAAGATGTTTATGATGTTAGTGGTGGCTGCAATCATGTTTTGC306470.1346165190593702No Hit
GGAAATTCCGTGTTACTTACCATGGCCATTTCCCTTTCCGCGACCATATC228370.10031120324204124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)