FastQCFastQC Report
Tue 24 Jan 2023
C.h120.1.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h120.1.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46347598
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC1371940.29601102520997963No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA1266130.2731813631420554No Hit
GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGG1182570.25515238135965534No Hit
AGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGT1104780.238368340037816No Hit
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA1083950.23387404024691855No Hit
GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA1038060.2239727720085947No Hit
CCCGCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAA931760.20103738709393312No Hit
GGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC905780.19543191860773454No Hit
GCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG852940.18403111203303352No Hit
AGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTG841340.18152828545720967No Hit
GCTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGA829120.17889168711612627No Hit
GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAT815880.17603501264509977No Hit
CTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCC814000.17562938213108692No Hit
GCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA802010.1730424087996966No Hit
GCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAATAG790510.17056115831504365No Hit
GGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA727110.1568819165126961No Hit
GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGAC707740.1527026276528937No Hit
CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG685410.1478846864944328No Hit
GTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGA674030.1454293273191849No Hit
GGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAA657360.14183259292099668No Hit
GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAG639810.13804598892050457No Hit
GTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG615590.13282025963891375No Hit
CGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACC597700.1289602969284406No Hit
CAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGA589610.1272147911527152No Hit
GTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAAG582650.12571309520722088No Hit
GGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCA581150.12538945383965744No Hit
GCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAAC580320.12521037228293902No Hit
GCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAG561170.12107855082371258No Hit
GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTG537630.11599953896208387No Hit
CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGA535240.11548387038309946No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA531160.11460356586332693No Hit
GCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAAGTA518180.11180298922934474No Hit
GCCGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT511700.11040485852147072No Hit
GTTATTTTCAAAAACCCGCCTACACAAAGACCAAAATCTTACCCATTTGT508240.10965832576695776No Hit
CCAGAAACAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAAT497750.10739499380313085No Hit
GTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA497170.10726985247433968No Hit
CCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC491050.10594939569468088No Hit
CCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTA485790.10481449329909177No Hit
AGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAA481870.1039687105251927No Hit
GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAA477440.10301288968632204No Hit
CGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAA471160.10165791116078982No Hit
GCCAAAATAACCGTGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGAC468400.10106241104447311No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)