FastQCFastQC Report
Tue 24 Jan 2023
C.h120.1.R2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h120.1.R2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46347598
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC1075410.23203144206092405No Hit
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT1063710.22950703939392933No Hit
GCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTAT903270.19489035871934507No Hit
CTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAA861450.18586723739167668No Hit
GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG791670.17081144097262602No Hit
GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCG735430.15867704729811458No Hit
GGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT697810.1505601217996238No Hit
GTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATG677090.1460895557090143No Hit
GCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTC671060.14478851741140933No Hit
GTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTA659740.142346103890864No Hit
GGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAA655810.1414981635078478No Hit
GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG622460.13430253710235424No Hit
GTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTA605550.13065402008535587No Hit
ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATT605050.1305461396295014No Hit
TGATGATTAAATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGAC594430.12825475874715234No Hit
ATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATC559970.12081963772966185No Hit
GGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC532420.11487542461208022No Hit
GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGA531050.11457983216303896No Hit
AGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAA523370.11292278836111419No Hit
GGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAG511700.11040485852147072No Hit
CATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCT511230.11030345089296752No Hit
GGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAG505690.10910813544209993No Hit
GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTT487880.1052654336045635No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)