FastQCFastQC Report
Tue 24 Jan 2023
C.h120.2.R2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h120.2.R2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46362841
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC1213590.26175919633570344No Hit
CTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAA1058450.22829705366847558No Hit
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT832560.17957484529474801No Hit
TGATGATTAAATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGAC798350.17219609126196558No Hit
ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATT707310.15255967596981385No Hit
ATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC604810.13045145356817112No Hit
GTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATG595270.12839377121000847No Hit
ATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG585930.12637922684677586No Hit
CTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC579680.12503116450521226No Hit
ATTCTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAA552110.119084591904107No Hit
ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT547960.11818947850930878No Hit
CTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGT533500.11507060147586728No Hit
TCTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATA530430.11440843325369125No Hit
CATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCT527780.11383685482086829No Hit
GCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTAT517590.11163897397918301No Hit
GAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTAC514670.11100915925320452No Hit
GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTT511320.11028659783812644No Hit
GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT510360.11007953546246227No Hit
CAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAA507020.10935913094713069No Hit
CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG500820.10802185310429963No Hit
CTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATC479800.103488049837153No Hit
GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG479590.10344275494247644No Hit
GGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAA478490.10320549597036127No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)