FastQCFastQC Report
Tue 24 Jan 2023
C.h120.3.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h120.3.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37789146
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA1473630.38996118091686965No Hit
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC1148590.3039470645883344No Hit
CCCGCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAA1018030.2693974613768726No Hit
GGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA764990.2024364350546583No Hit
GGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC750070.1984882114033485No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA694390.18375382179846034No Hit
GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGG690200.1826450378105925No Hit
GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA636960.16855633625591857No Hit
GCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG618770.16374278476682166No Hit
GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAT615000.16274514380399072No Hit
GTTATTTTCAAAAACCCGCCTACACAAAGACCAAAATCTTACCCATTTGT606510.16049846694074535No Hit
GGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGA597410.15809036806494647No Hit
GCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA583560.1544252945012306No Hit
GTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATA561800.1486670272993203No Hit
AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTAT550580.1456979207733353No Hit
CTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCC546050.1444991638604376No Hit
CCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC534490.14144008440942277No Hit
GCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAATAG533950.14129718623437534No Hit
AGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGT526460.1393151356212178No Hit
GTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA518460.13719812562051548No Hit
CCCTACTCTAATCAAAAGAAAATGCGTTTCGCCTTTTGAAGCGCCAGTCG502640.13301173834412663No Hit
AGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTG489510.12953719568047395No Hit
GCTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGA477660.12640137461693365No Hit
CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG471440.12475539934138762No Hit
GTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG457010.1209368425526208No Hit
GGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAA428390.11336323927510826No Hit
GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAA414320.10963994793637304No Hit
GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAG412400.10913186553620449No Hit
GTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAAG402440.1064961880853301No Hit
GCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAAC381990.1010845812710348No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)