FastQCFastQC Report
Tue 24 Jan 2023
C.h180.2.R2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h180.2.R2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43905197
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTATTGACCGCAACTTCTGTATTTATTATCGCCAGATCGGAAGAGCGT1383590.31513125883480264No Hit
CTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAA1319970.3006409469020262No Hit
CTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT1112010.2532752557743905No Hit
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC984540.22424224631084105No Hit
TGATGATTAAATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGAC762490.1736673678972446No Hit
GTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATG728460.1659165770284552No Hit
ATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG631820.14390551533113494No Hit
ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATT620680.14136823028034698No Hit
TCTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATA594680.1354463800720448No Hit
GTTTGCCGACCCGCAGTAGGGACCTCCCGGTCCCCAGAGGCACGTGTCGT594520.13540993791691674No Hit
CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG592430.13493391226555707No Hit
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT562900.12820805700974305No Hit
GAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTAC549070.12505808822586537No Hit
CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGG538040.12254585715672794No Hit
CTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC532140.12120205268638243No Hit
ATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC527270.12009284458967351No Hit
GCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTAT516840.11771727160226612No Hit
CTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGT487970.11114174023635517No Hit
CTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATC474160.10799632672186849No Hit
CAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCG473710.10789383316057094No Hit
GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG470880.1072492625417442No Hit
GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT470670.10720143221313869No Hit
CTGATGATTAAATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGA464800.1058644606468797No Hit
CGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA463080.10547270747925354No Hit
ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT454020.10340917044512976No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)