FastQCFastQC Report
Tue 24 Jan 2023
C.h180.3.R2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h180.3.R2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46375935
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATA896290.19326618428286135No Hit
AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGC555090.11969354364499604No Hit
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC547710.11810220106613484No Hit
CCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTT534240.11519767741609954No Hit
GTTTAGTGGACTTCTCGCGACGTCGCGGGCGGCGAACCACCCACGTCGCC464670.10019636261781029No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)