FastQCFastQC Report
Tue 24 Jan 2023
M.Las10.6.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameM.Las10.6.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46312838
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTACTCTAAAGAAAATTCGTTTCGCCTTTTGAAGCGCCAGTCGCGTAG857340.18511929672718394No Hit
GGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGA814750.17592314252043892No Hit
GTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAA587080.12676398712598871No Hit
CTGGAAGTTTCCACCTTGTTGACTATGACAACAGTCGCGACTATAAACAG495970.1070912562084837No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)