FastQCFastQC Report
Tue 24 Jan 2023
M.h10.6.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameM.h10.6.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46063966
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAGTTTACCTACTACTGTACCGGCGTGAATATGATCTCCACCAGACA1003600.2178709492795301No Hit
GTTAAGTAGTCATGCATTACGATAGGAACTCCCAACTCTCTGGCAAAGAC906110.19670690100804608No Hit
CTGTTAAGTAGTCATGCATTACGATAGGAACTCCCAACTCTCTGGCAAAG730390.1585599468356676No Hit
CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAG712320.15463714088361388No Hit
CTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCC598670.12996492746629762No Hit
CTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTAAGATTCAAGGCGGC529950.1150465420194171No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA478650.10390985439681855No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)