FastQCFastQC Report
Tue 24 Jan 2023
C.Las120.2.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.Las120.2.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45118798
Sequences flagged as poor quality0
Sequence length20-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA2609790.5784263135733358No Hit
GTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA932240.20661897952157326No Hit
CCCTACTCTAATCAAAAGAAAATGCGTTTCGCCTTTTGAAGCGCCAGTCG818380.18138337816534916No Hit
GTTTGTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAA811870.17994052057858456No Hit
CCCGCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAA729460.16167540633507124No Hit
GGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA688290.15255060651216817No Hit
GGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGA670230.14854784030372442No Hit
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC639260.14168373900386264No Hit
GGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC533990.11835200042341554No Hit
GTTCTATTGAGAGGGACCATCCAGGTATGAGCGGACTGACTGGGAACCGA526500.11669193846875088No Hit
GCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG501700.11119533813821901No Hit
CTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCC480630.10652544422836796No Hit
CCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCG479090.10618412307881074No Hit
GGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGACCCGTTATCC460320.1020239945221945No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA459360.1018112228964965No Hit
GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA454170.10066092629506664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)