FastQCFastQC Report
Tue 24 Jan 2023
C.Las120.2.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.Las120.2.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45118798
Sequences flagged as poor quality0
Sequence length20-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC777060.17222533277593077No Hit
GGGCCGGCGATGCGCCCCGGTCGGATGCGGAACGGCGAGAGCCGGTCCGC637310.14125154663916356No Hit
GCCCAATCCAAGTAATGAGTGATCCACGTGGTCCGGGCGAAGGTCTGGAT548960.12166990796164384No Hit
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT545710.12094958735381205No Hit
GTCTGGATCACTTGGATGCTAAAGTGGAGGGAACCGCGTGAGGCTGGTTT517090.11460633326269021No Hit
CTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAA485570.1076203315522723No Hit
ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATT477480.10582728733154638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)