FastQCFastQC Report
Tue 24 Jan 2023
C.h120.2.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h120.2.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46257600
Sequences flagged as poor quality0
Sequence length20-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC1199920.2593995365085954No Hit
CTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAA1054280.2279149804572654No Hit
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT824000.17813289059527515No Hit
TGATGATTAAATAAACCAAGATTTTACCATGACTGCAATTTTAGAGAGAC792640.17135346407941612No Hit
ATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATT697790.1508487253986372No Hit
ATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC594560.1285323925149597No Hit
GTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATG591220.1278103490021099No Hit
CTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC574210.12413311542319531No Hit
ATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG571810.12361428176126733No Hit
ATTCTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAA544930.1178033447476739No Hit
ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT534060.11545346062052506No Hit
TCTCGCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATA527290.1139899173325032No Hit
CTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGT526420.11380184013005432No Hit
CATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTATGGGGTCGCT523140.11309276745875273No Hit
GAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTAC514090.11113633219189928No Hit
GCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTAT511050.11047914288679049No Hit
GGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTT506420.10947822628065441No Hit
GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT506250.10944147556293453No Hit
CAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAA500530.10820492200200615No Hit
CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG494540.1069099996541109No Hit
GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG479400.10363702397011518No Hit
GGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAA475840.102867420704922No Hit
CTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATC475120.10271177060634362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)