FastQCFastQC Report
Tue 24 Jan 2023
C.h180.3.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h180.3.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46219032
Sequences flagged as poor quality0
Sequence length20-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA1592030.34445334121233867No Hit
GTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAAGCTGATTGG881410.19070282562386856No Hit
GGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGA786560.17018097652932238No Hit
GTCTGGAGAAGCGTCCTCAGCGACGGACCGGGCCTAAGTTCCCTGGAAAG742570.16066325231562617No Hit
GTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA712200.15409236610580682No Hit
GGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATG682490.1476642782133559No Hit
GTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGG648510.14031232847974834No Hit
CCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAAGCGGA638780.13820713510399785No Hit
GTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTG628270.13593318008044825No Hit
GTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGATGGGTCGGCCGGTCC614050.13285652542441825No Hit
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC613650.13276998098964946No Hit
GGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGG600870.13000488629878704No Hit
GCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGCGTCCTGG578890.12524926960824276No Hit
GTCGACGCGGGCTCTGCCCGTTGCTCTGATGATTCATGATAACTCGACGG494420.10697324859594635No Hit
GTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCC492720.10660543474817906No Hit
GCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTG490180.10605587758739732No Hit
GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGG489340.1058741342743829No Hit
CCCGCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAA482390.1043704247202754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)