FastQCFastQC Report
Tue 24 Jan 2023
C.h180.3.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h180.3.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46219032
Sequences flagged as poor quality0
Sequence length20-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATA889100.19236664238229825No Hit
AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGC548820.11874329172449997No Hit
GTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGC543500.11759225074207526No Hit
CCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTT530050.11468219412297515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)