FastQCFastQC Report
Tue 24 Jan 2023
M.h10.6.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameM.h10.6.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45875737
Sequences flagged as poor quality0
Sequence length20-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAGTTTACCTACTACTGTACCGGCGTGAATATGATCTCCACCAGACA997630.217463536335122No Hit
GTTAAGTAGTCATGCATTACGATAGGAACTCCCAACTCTCTGGCAAAGAC902720.19677504036610902No Hit
CTGTTAAGTAGTCATGCATTACGATAGGAACTCCCAACTCTCTGGCAAAG725850.15822089136137474No Hit
CTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAG709480.15465255631751487No Hit
CTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCC597440.13023006039118237No Hit
CTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTAAGATTCAAGGCGGC527300.11494093272005636No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA476240.10381086629736325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)