FastQCFastQC Report
Sat 1 Apr 2023
C.Las.120.1.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.Las.120.1.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46217332
Total Bases6.6 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA1422070.30769192821428987No Hit
CCCGCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAA899260.1945720276540411No Hit
GGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA787740.17044255172496758No Hit
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC728820.15769408757736167No Hit
CTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCC713150.15430358463790164No Hit
CCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC692410.14981609063889711No Hit
CCCTACTCTAATCAAAAGAAAATGCGTTTCGCCTTTTGAAGCGCCAGTCG675870.14623734663004778No Hit
GGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC631590.1366565253052686No Hit
CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG624210.13505972175113873No Hit
GGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGA585460.12667542124673056No Hit
CCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTA540000.1168392844485268No Hit
GTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATA517910.11205969223840097No Hit
GCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA513240.11104924879696647No Hit
GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA508690.110064769640965No Hit
CGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACC501400.10848743930090987No Hit
CCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGG494350.10696203753172079No Hit
GCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG491960.10644491551351343No Hit
ATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATAC488680.10573522504501126No Hit
GTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA486200.10519862981272912No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA483540.10462308815229751No Hit
CCCGACTCGCAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCGCGACGG478810.10359966256814651No Hit
AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTAT469600.1016069036611633No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA465680.10075873700368511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)