FastQCFastQC Report
Sat 1 Apr 2023
C.h.030.1.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h.030.1.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26571312
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6301022.371362016297878No Hit
CGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACC615910.2317951029290537No Hit
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA589630.2219047369584159No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA445690.16773353156215998No Hit
AGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGT318380.11982095577365544No Hit
GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTG301450.11344942244477804No Hit
TCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC301350.11341178787106937No Hit
CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGA296600.11162414561990766No Hit
GCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA290390.10928703859259942No Hit
GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAG282790.1064268109907407No Hit
CGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCA279460.10517357968624207No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA275760.10378110045902136No Hit
GCCAAAATAACCGTGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGAC273530.10294184946531809No Hit
CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG270220.10169614507556118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)