FastQCFastQC Report
Sat 1 Apr 2023
C.h.060.3.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h.060.3.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43556017
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5061841.1621448306441795No Hit
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA1315940.3021258807939211No Hit
CGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACC657480.15095044158881654No Hit
AGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGT620690.1425038474018412No Hit
GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA560580.12870322830482872No Hit
GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTG548750.1259871856510663No Hit
GTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGCCGCTCGATGGGA545040.12513540896083314No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA536440.12316094008320366No Hit
GTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGA529960.1216732007428503No Hit
GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAG514510.11812604444524852No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA512110.11757502987474727No Hit
GGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC507410.11649595967418232No Hit
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC484180.11116259781053901No Hit
GCAAAGGATTCTACCCGCCGCTCGATGGGAATTACGATTCAAGGCGGCCG479990.1102006182062056No Hit
CGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCA443500.10182290084054288No Hit
GTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAAG443280.10177239117158025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)