FastQCFastQC Report
Sat 1 Apr 2023
C.h.120.1.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h.120.1.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46106585
Total Bases6.6 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC1357850.2945024013381169No Hit
GCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGGAA1252490.271651001695311No Hit
GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGG1172150.2542261588013946No Hit
AGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGT1092890.23703555576714258No Hit
GTTCTATTGAGGGGGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA1074810.23311420700535512No Hit
GCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATA1025490.22241725341401886No Hit
CCCGCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAA923240.20024037781154252No Hit
GGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGC897010.19455138566432537No Hit
GCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAG843810.18301290368826925No Hit
AGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTG831320.18030396308900346No Hit
GCTCAGCCTGGAATACAATCATGAAATTGAAAGTACCAGAGATTCCTAGA817930.17739982260668405No Hit
CTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCC807140.17505959289763057No Hit
GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCAT806000.17481233971242935No Hit
GCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAA794040.1722183501554062No Hit
GCCTACACAAAGACCAAAATCTTACCCATTTGTAGATGGGGCTTCAATAG780160.16920793418120209No Hit
GGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAA719840.1561252042414332No Hit
GTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGAC699900.15180044238800164No Hit
CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG680220.14753207161189663No Hit
GTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGA667270.14472336218351456No Hit
GGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAA652070.14142665304749852No Hit
GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAG633840.13747277097186877No Hit
GTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAG611160.13255373391891853No Hit
CGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACC592750.12856081186667806No Hit
CAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGA585960.12708813719341824No Hit
GTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAAG578490.12546797816407354No Hit
GCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAAC578120.12538772932326261No Hit
GGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCA576290.12499082289438701No Hit
GCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAG555120.12039928786744887No Hit
GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTG533780.11577088175148952No Hit
CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGA532300.11544988638824585No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTA527370.11438062480663012No Hit
GCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAAAGTA512570.11117067117419345No Hit
GCCGAATACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGT505140.10955918769520667No Hit
GTTATTTTCAAAAACCCGCCTACACAAAGACCAAAATCTTACCCATTTGT503260.10915143682838362No Hit
CCAGAAACAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAAT493570.1070497847541734No Hit
GTTCTATTGAGGGAGACTATCCAAGTACGAGCGAGCCAACTGGGAACCGA492790.10688061152219362No Hit
CCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC485660.10533419467089136No Hit
CCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTA482520.10465316396779333No Hit
AGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAA478630.10380946669548395No Hit
GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTGAA472400.10245824972723526No Hit
CGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGGTAA468850.10168829463296837No Hit
GCCAAAATAACCGTGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGAC464550.10075567296949015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)