FastQCFastQC Report
Sat 1 Apr 2023
C.h.0.2.R2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.h.0.2.R2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36586565
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG990330.27068132796834027No Hit
CTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTT446240.12196826895337129No Hit
CTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAAGAACATGGAAACC445510.12176874215986114No Hit
AGCAACTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCT401580.10976160238054598No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)