FastQCFastQC Report
Sat 1 Apr 2023
C.Las.0.2.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC.Las.0.2.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32786679
Sequences flagged as poor quality0
Sequence length20-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG544600.1661040448774943No Hit
CTTTGATTCCCGTAAGCAGAGATCTTTCTGATTTGAAGAACATGGAAACC461530.14076753549818205No Hit
CTTAACTACTTTCGAACTTTGATTCCCGTAAGCAGAGATCTTTCTGATTT362170.11046254486463847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)