FastQCFastQC Report
Mon 12 Jun 2023
M.h.010.3.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameM.h.010.3.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42845525
Total Bases6.2 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTATTGAGAGAGACCATCCAAGTATGCACGGGCCAACTGGGAACCGA836920.1953342852024803No Hit
CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGA569930.13301972609741625No Hit
CCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCGCGCGACGTGCG493100.11508786506875572No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTAAA473100.11041993300350504No Hit
CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGG469600.10960304489208617No Hit
GGAAAGGAGAGTGAGGGGAAGAGTCAACTACGTCGAACCTCGGCCCGATC439220.10251245608497035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)