FastQCFastQC Report
Tue 7 Nov 2023
BP.1.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameBP.1.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19481992
Total Bases961.4 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAACCGGAAAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGGCTTAA554260.28449862827168804Illumina Single End PCR Primer 1 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)