CHROM	POSI	variant	bulk1_depth	bulk2_depth	p99	p95	bulk1_SNPindex	bulk2_SNPindex	delta_SNPindex
SL4.0ch01	12889776	indel	17	13	0.8462	0.7647	0.0588	1.0	0.9412
SL4.0ch01	21482485	indel	20	13	0.85	0.8231	1.0	0.0	-1.0
SL4.0ch01	25387046	indel	26	15	0.8564	0.7795	0.0385	0.8667	0.8282
SL4.0ch01	27142308	indel	28	16	0.7411	0.6875	0.0714	1.0	0.9286
SL4.0ch01	27468578	indel	16	23	0.7826	0.6821	0.9375	0.0	-0.9375
SL4.0ch01	27468586	indel	14	24	0.7619	0.7202	0.8571	0.0	-0.8571
SL4.0ch01	40059218	indel	26	17	0.7081	0.6493	0.7308	0.0	-0.7308
SL4.0ch01	40104670	indel	15	20	0.7167	0.7	1.0	0.05	-0.95
SL4.0ch01	71525040	indel	16	20	0.7	0.7	0.0625	1.0	0.9375
SL4.0ch01	71525042	indel	14	22	0.7662	0.7468	0.0	0.9091	0.9091
SL4.0ch01	80771879	snp	15	33	0.7879	0.6303	0.7333	0.0303	-0.703
SL4.0ch02	7353215	indel	17	24	0.8333	0.799	0.8824	0.0833	-0.799
SL4.0ch02	7353222	indel	16	25	0.7375	0.6975	0.875	0.04	-0.835
SL4.0ch04	758548	indel	13	19	0.8178	0.7166	0.0	1.0	1.0
SL4.0ch04	34225652	indel	14	20	0.8286	0.7357	1.0	0.1	-0.9
SL4.0ch04	42726549	indel	25	14	0.6971	0.6886	1.0	0.0	-1.0
SL4.0ch04	58314389	indel	17	13	0.8462	0.7647	0.0	0.9231	0.9231
SL4.0ch04	58481376	indel	15	19	0.7895	0.7614	1.0	0.0	-1.0
SL4.0ch05	4404918	indel	19	17	0.7771	0.7647	1.0	0.0588	-0.9412
SL4.0ch05	4856285	indel	16	24	0.7083	0.6667	1.0	0.0833	-0.9167
SL4.0ch05	5137976	indel	19	13	0.8178	0.7166	0.0526	1.0	0.9474
SL4.0ch05	48970961	indel	15	13	0.7897	0.7897	0.0667	1.0	0.9333
SL4.0ch05	52779844	indel	14	21	0.8571	0.6905	0.0714	1.0	0.9286
SL4.0ch06	18141356	indel	17	31	0.7002	0.6945	0.8235	0.0645	-0.759
SL4.0ch07	3719777	indel	17	25	0.8424	0.7812	0.9412	0.04	-0.9012
SL4.0ch08	9460624	indel	15	15	0.7333	0.7333	0.9333	0.2	-0.7333
SL4.0ch08	28113277	indel	12	16	0.875	0.8125	0.8333	0.0	-0.8333
SL4.0ch08	52433542	indel	20	18	0.7833	0.7389	0.85	0.1111	-0.7389
SL4.0ch08	52930546	indel	21	14	0.8571	0.6905	0.0476	1.0	0.9524
SL4.0ch08	55627553	indel	28	19	0.6992	0.6805	0.0	0.9474	0.9474
SL4.0ch08	61591714	indel	18	16	0.7639	0.7639	0.0556	1.0	0.9444
SL4.0ch09	294421	indel	24	12	0.75	0.75	0.125	1.0	0.875
SL4.0ch09	515341	indel	19	17	0.7771	0.7647	1.0	0.1176	-0.8824
SL4.0ch09	30100883	indel	19	13	0.8178	0.7166	0.1053	0.9231	0.8178
SL4.0ch11	7810289	indel	19	17	0.7771	0.7647	0.0	0.8824	0.8824
SL4.0ch11	16522146	indel	15	22	0.7061	0.6848	1.0	0.1818	-0.8182
SL4.0ch12	6425180	indel	15	19	0.7895	0.7614	0.0	0.8947	0.8947
SL4.0ch12	13616147	indel	21	17	0.7507	0.7283	0.1429	0.9412	0.7983
SL4.0ch12	50920452	indel	23	15	0.6928	0.6928	0.087	0.8	0.713