CHROM	POSI	variant	bulk1_depth	bulk2_depth	p99	p95	bulk1_SNPindex	bulk2_SNPindex	delta_SNPindex
SL4.0ch00	715060	indel	22	16	0.5227	0.4148	0.9545	0.0625	-0.892
SL4.0ch01	12889776	indel	17	13	0.5747	0.4389	0.0588	1.0	0.9412
SL4.0ch01	16315784	indel	22	9	0.596	0.4596	0.0455	1.0	0.9545
SL4.0ch01	21482485	indel	20	13	0.5692	0.4423	1.0	0.0	-1.0
SL4.0ch01	25387046	indel	26	15	0.5205	0.3974	0.0385	0.8667	0.8282
SL4.0ch01	27142308	indel	28	16	0.5089	0.4018	0.0714	1.0	0.9286
SL4.0ch01	27468578	indel	16	23	0.5326	0.4076	0.9375	0.0	-0.9375
SL4.0ch01	27468586	indel	14	24	0.5536	0.4226	0.8571	0.0	-0.8571
SL4.0ch01	40059218	indel	26	17	0.5136	0.3982	0.7308	0.0	-0.7308
SL4.0ch01	40104670	indel	15	20	0.55	0.4167	1.0	0.05	-0.95
SL4.0ch01	42403484	indel	25	16	0.5325	0.4075	0.0	0.875	0.875
SL4.0ch01	71525040	indel	16	20	0.525	0.4125	0.0625	1.0	0.9375
SL4.0ch01	71525042	indel	14	22	0.5584	0.4221	0.0	0.9091	0.9091
SL4.0ch01	77242071	indel	18	9	0.6111	0.4444	0.9444	0.2222	-0.7222
SL4.0ch01	79326627	snp	14	17	0.563	0.4328	0.7143	0.0	-0.7143
SL4.0ch01	79339376	snp	24	23	0.4909	0.3678	0.875	0.3043	-0.5707
SL4.0ch01	79370267	snp	28	18	0.5079	0.3849	0.7857	0.2778	-0.5079
SL4.0ch01	79374649	snp	21	16	0.5268	0.4167	0.7619	0.1875	-0.5744
SL4.0ch01	79382721	snp	23	25	0.5061	0.3826	0.913	0.32	-0.593
SL4.0ch01	79384425	snp	9	15	0.6222	0.4889	0.6667	0.0	-0.6667
SL4.0ch01	79389577	snp	27	21	0.4921	0.381	0.7407	0.1905	-0.5503
SL4.0ch01	79401510	indel	12	17	0.5735	0.4314	0.75	0.1176	-0.6324
SL4.0ch01	79406213	snp	14	13	0.5604	0.4725	0.7857	0.1538	-0.6319
SL4.0ch01	79420495	snp	12	18	0.5833	0.4444	0.9167	0.3333	-0.5833
SL4.0ch01	79426131	indel	21	22	0.4913	0.3939	0.7143	0.1364	-0.5779
SL4.0ch01	79428489	snp	13	9	0.6581	0.5043	0.7692	0.1111	-0.6581
SL4.0ch01	79434697	snp	16	15	0.55	0.4208	0.875	0.2	-0.675
SL4.0ch01	79447180	snp	25	28	0.4786	0.3671	0.8	0.25	-0.55
SL4.0ch01	79454908	indel	36	35	0.4611	0.3508	0.8056	0.2571	-0.5484
SL4.0ch01	79454978	snp	28	30	0.4786	0.3548	0.75	0.2	-0.55
SL4.0ch01	79459967	snp	18	17	0.5458	0.4281	0.6667	0.1176	-0.549
SL4.0ch01	79495780	snp	17	21	0.5266	0.409	0.7647	0.2381	-0.5266
SL4.0ch01	79514652	snp	27	20	0.5037	0.4019	0.6296	0.1	-0.5296
SL4.0ch01	79567052	snp	27	23	0.4799	0.3816	0.7778	0.2609	-0.5169
SL4.0ch01	79569020	snp	14	13	0.5604	0.4725	0.7143	0.1538	-0.5604
SL4.0ch01	79570973	indel	10	12	0.6333	0.4833	0.8	0.0833	-0.7167
SL4.0ch01	79594932	snp	17	22	0.5241	0.4011	0.8235	0.2727	-0.5508
SL4.0ch01	79606847	snp	13	20	0.5692	0.4423	0.7692	0.2	-0.5692
SL4.0ch01	79610809	snp	23	17	0.5192	0.4015	0.6522	0.0588	-0.5934
SL4.0ch01	79611915	snp	17	28	0.5126	0.395	0.7647	0.25	-0.5147
SL4.0ch01	79623768	snp	12	18	0.5833	0.4444	0.8333	0.1667	-0.6667
SL4.0ch01	79632317	snp	27	15	0.5259	0.4	0.7407	0.2	-0.5407
SL4.0ch01	79635412	snp	22	23	0.5119	0.3794	0.7273	0.1739	-0.5534
SL4.0ch01	79637440	snp	22	25	0.5036	0.3909	0.7273	0.2	-0.5273
SL4.0ch01	79643796	snp	13	18	0.547	0.4359	0.9231	0.3333	-0.5897
SL4.0ch01	79653057	indel	28	21	0.5	0.381	0.7143	0.1905	-0.5238
SL4.0ch01	79657932	snp	23	17	0.5192	0.4015	0.8261	0.1765	-0.6496
SL4.0ch01	79687357	indel	19	15	0.5509	0.4316	0.6842	0.1333	-0.5509
SL4.0ch01	79725635	indel	26	25	0.4892	0.3738	0.5769	0.08	-0.4969
SL4.0ch01	79725689	snp	21	21	0.5238	0.381	0.6667	0.1429	-0.5238
SL4.0ch01	79734618	snp	9	11	0.6869	0.5051	0.7778	0.0	-0.7778
SL4.0ch01	79744222	snp	12	21	0.5595	0.4405	0.75	0.1429	-0.6071
SL4.0ch01	79749614	snp	11	20	0.5682	0.4455	0.7273	0.15	-0.5773
SL4.0ch01	79767911	snp	15	21	0.5429	0.419	0.7333	0.1905	-0.5429
SL4.0ch01	79801081	indel	21	20	0.5143	0.4143	0.8095	0.2	-0.6095
SL4.0ch01	79807637	snp	10	18	0.5889	0.4556	0.9	0.2778	-0.6222
SL4.0ch01	79873781	indel	29	28	0.4741	0.3695	0.7241	0.25	-0.4741
SL4.0ch01	79873821	snp	24	27	0.4907	0.375	0.7917	0.2963	-0.4954
SL4.0ch01	79957768	snp	24	12	0.5417	0.4167	0.7083	0.1667	-0.5417
SL4.0ch01	79971611	indel	13	11	0.6014	0.4825	0.6923	0.0	-0.6923
SL4.0ch01	80035883	snp	19	29	0.5118	0.3938	0.6842	0.1724	-0.5118
SL4.0ch01	80069181	indel	16	15	0.55	0.4208	0.75	0.2	-0.55
SL4.0ch01	80230629	indel	14	20	0.5571	0.4357	0.7857	0.2	-0.5857
SL4.0ch01	80281313	indel	21	23	0.5052	0.4017	0.8095	0.3043	-0.5052
SL4.0ch01	80299410	snp	17	22	0.5241	0.4011	0.7647	0.1364	-0.6283
SL4.0ch01	80330168	snp	26	16	0.5337	0.4087	0.7692	0.1875	-0.5817
SL4.0ch01	80331617	snp	23	23	0.4783	0.3913	0.6522	0.0435	-0.6087
SL4.0ch01	80357384	snp	12	22	0.5606	0.4318	0.6667	0.0909	-0.5758
SL4.0ch01	80395207	snp	14	14	0.5714	0.4286	0.7143	0.1429	-0.5714
SL4.0ch01	80402836	indel	24	16	0.5417	0.4167	0.6667	0.125	-0.5417
SL4.0ch01	80404283	indel	21	16	0.5268	0.4167	0.6667	0.0625	-0.6042
SL4.0ch01	80446836	indel	25	23	0.5061	0.3826	0.6	0.0435	-0.5565
SL4.0ch01	80456347	snp	11	18	0.5758	0.4495	0.8182	0.1111	-0.7071
SL4.0ch01	80503487	snp	32	19	0.5082	0.3832	0.6875	0.1579	-0.5296
SL4.0ch01	80576187	indel	21	27	0.4921	0.381	0.7143	0.1852	-0.5291
SL4.0ch01	80577466	snp	16	13	0.5817	0.4567	0.625	0.0	-0.625
SL4.0ch01	80600718	indel	23	15	0.5391	0.4261	0.6087	0.0667	-0.542
SL4.0ch01	80606969	indel	22	19	0.5167	0.4043	0.6364	0.1053	-0.5311
SL4.0ch01	80629651	indel	21	25	0.4895	0.3867	0.7143	0.2	-0.5143
SL4.0ch01	80633271	indel	19	10	0.5895	0.4737	0.7895	0.1	-0.6895
SL4.0ch01	80651391	snp	21	22	0.4913	0.3939	0.7143	0.1818	-0.5325
SL4.0ch01	80717061	snp	20	30	0.4833	0.3833	0.65	0.1333	-0.5167
SL4.0ch01	80771879	snp	15	33	0.5152	0.4061	0.7333	0.0303	-0.703
SL4.0ch01	80791436	snp	12	12	0.5833	0.5	0.6667	0.0833	-0.5833
SL4.0ch01	80797156	indel	18	24	0.5	0.4028	0.6667	0.1667	-0.5
SL4.0ch01	80817734	indel	19	17	0.5201	0.4087	0.8947	0.3529	-0.5418
SL4.0ch01	80819677	snp	21	18	0.5159	0.3968	0.5714	0.0556	-0.5159
SL4.0ch01	80854423	snp	16	32	0.5	0.4062	0.875	0.3438	-0.5312
SL4.0ch01	80876382	snp	22	26	0.5035	0.3881	0.7727	0.2692	-0.5035
SL4.0ch01	80880418	snp	25	25	0.48	0.4	0.76	0.24	-0.52
SL4.0ch01	80918420	snp	10	18	0.5889	0.4556	0.7	0.1111	-0.5889
SL4.0ch01	80918510	snp	12	18	0.5833	0.4444	0.75	0.1667	-0.5833
SL4.0ch01	80918522	indel	11	14	0.6039	0.461	0.8182	0.0714	-0.7468
SL4.0ch01	80963928	snp	37	30	0.4568	0.3423	0.6757	0.2	-0.4757
SL4.0ch01	80989760	indel	32	20	0.4813	0.3812	0.6875	0.2	-0.4875
SL4.0ch01	80994347	snp	13	24	0.5609	0.4295	0.7692	0.1667	-0.6026
SL4.0ch01	81007121	snp	32	17	0.511	0.3934	0.7188	0.1765	-0.5423
SL4.0ch01	81064212	snp	18	24	0.5	0.4028	0.7222	0.2083	-0.5139
SL4.0ch01	81144109	snp	10	18	0.5889	0.4556	0.7	0.1111	-0.5889
SL4.0ch01	81182181	snp	14	13	0.5604	0.4725	0.7143	0.0769	-0.6374
SL4.0ch01	81210454	indel	20	19	0.5342	0.3921	0.75	0.1579	-0.5921
SL4.0ch01	81213670	snp	11	17	0.5829	0.4599	0.8182	0.0	-0.8182
SL4.0ch01	81213686	indel	12	19	0.5921	0.443	0.8333	0.0526	-0.7807
SL4.0ch01	81231567	snp	41	22	0.459	0.3614	0.7317	0.2273	-0.5044
SL4.0ch01	81251128	snp	22	24	0.4848	0.3864	0.7273	0.2083	-0.5189
SL4.0ch01	81269616	snp	26	18	0.5128	0.3932	0.8077	0.1667	-0.641
SL4.0ch01	81278542	indel	32	20	0.4813	0.3812	0.5938	0.1	-0.4938
SL4.0ch01	81286888	indel	15	10	0.6	0.4667	0.7333	0.1	-0.6333
SL4.0ch01	81290465	indel	29	19	0.5118	0.3938	0.6552	0.1053	-0.5499
SL4.0ch01	81333324	indel	24	17	0.5221	0.4069	0.7083	0.1765	-0.5319
SL4.0ch01	81333343	snp	23	18	0.529	0.4058	0.7391	0.1667	-0.5725
SL4.0ch01	81337512	snp	22	21	0.4913	0.3939	0.7727	0.2381	-0.5346
SL4.0ch01	81373032	snp	30	31	0.4699	0.3505	0.6	0.129	-0.471
SL4.0ch01	81402588	indel	9	13	0.6581	0.5043	0.7778	0.0	-0.7778
SL4.0ch01	81402610	snp	9	10	0.6778	0.4889	0.7778	0.0	-0.7778
SL4.0ch01	81434948	snp	12	15	0.6	0.4667	0.75	0.0667	-0.6833
SL4.0ch01	81479347	snp	31	31	0.4516	0.3548	0.5484	0.0968	-0.4516
SL4.0ch01	81498922	snp	28	24	0.4881	0.369	0.7143	0.1667	-0.5476
SL4.0ch01	81504614	snp	22	21	0.4913	0.3939	0.8182	0.2857	-0.5325
SL4.0ch01	81511947	snp	15	18	0.5333	0.4222	0.8	0.1667	-0.6333
SL4.0ch01	81522247	indel	26	11	0.5629	0.4196	0.8462	0.1818	-0.6643
SL4.0ch01	81528658	snp	22	17	0.5241	0.4011	0.7727	0.2353	-0.5374
SL4.0ch01	81596679	snp	27	21	0.4921	0.381	0.5556	0.0476	-0.5079
SL4.0ch01	81778140	indel	15	22	0.5697	0.4152	0.6	0.0	-0.6
SL4.0ch01	81805229	snp	19	16	0.5395	0.4145	0.7368	0.1875	-0.5493
SL4.0ch01	81808429	indel	26	23	0.5033	0.3829	0.7308	0.087	-0.6438
SL4.0ch01	81834287	snp	24	22	0.4848	0.3864	0.625	0.1364	-0.4886
SL4.0ch01	81920500	snp	15	18	0.5333	0.4222	0.7333	0.1667	-0.5667
SL4.0ch01	81939006	snp	19	28	0.5226	0.3966	0.7895	0.1786	-0.6109
SL4.0ch01	81939018	indel	20	30	0.4833	0.3833	0.8	0.2	-0.6
SL4.0ch01	81962815	snp	13	23	0.5518	0.4314	0.6923	0.1304	-0.5619
SL4.0ch01	82045348	indel	12	18	0.5833	0.4444	0.8333	0.0556	-0.7778
SL4.0ch01	82298074	snp	21	31	0.4885	0.3902	0.619	0.129	-0.49
SL4.0ch01	82319275	snp	18	21	0.5159	0.3968	0.6111	0.0952	-0.5159
SL4.0ch01	82320680	snp	19	20	0.5342	0.3921	0.6842	0.1	-0.5842
SL4.0ch01	82322024	snp	22	29	0.4859	0.3715	0.6818	0.1379	-0.5439
SL4.0ch01	82325824	snp	25	22	0.5036	0.3909	0.72	0.1818	-0.5382
SL4.0ch01	82338919	indel	17	24	0.5221	0.4069	0.6471	0.125	-0.5221
SL4.0ch01	82377706	snp	10	14	0.6286	0.4857	0.7	0.0714	-0.6286
SL4.0ch01	82384288	snp	20	23	0.4891	0.3957	0.75	0.2174	-0.5326
SL4.0ch01	82384828	indel	17	20	0.5235	0.4059	0.6471	0.1	-0.5471
SL4.0ch01	82385415	indel	29	22	0.4859	0.3715	0.5862	0.0909	-0.4953
SL4.0ch01	82400349	snp	15	18	0.5333	0.4222	0.5333	0.0	-0.5333
SL4.0ch01	82497016	snp	13	25	0.5323	0.4123	0.6923	0.16	-0.5323
SL4.0ch01	82547227	snp	21	28	0.5	0.381	0.7619	0.25	-0.5119
SL4.0ch01	82597364	indel	18	28	0.5079	0.3849	0.8333	0.3214	-0.5119
SL4.0ch01	82632757	indel	16	16	0.5625	0.4375	0.75	0.0625	-0.6875
SL4.0ch01	82647337	snp	17	17	0.5294	0.4118	0.5882	0.0588	-0.5294
SL4.0ch01	82654157	snp	21	27	0.4921	0.381	0.7143	0.1111	-0.6032
SL4.0ch01	82680528	snp	16	29	0.5022	0.3966	0.8125	0.2069	-0.6056
SL4.0ch01	82697434	indel	9	18	0.6111	0.4444	0.7778	0.0556	-0.7222
SL4.0ch01	82706147	snp	23	23	0.4783	0.3913	0.6522	0.1304	-0.5217
SL4.0ch01	82725367	snp	23	19	0.5011	0.389	0.7391	0.1579	-0.5812
SL4.0ch01	82808147	snp	11	9	0.6869	0.5051	0.7273	0.0	-0.7273
SL4.0ch01	82836808	indel	20	20	0.5	0.4	0.75	0.15	-0.6
SL4.0ch01	82840091	snp	14	25	0.5371	0.4114	0.7143	0.12	-0.5943
SL4.0ch01	82841563	snp	17	18	0.5458	0.4281	0.7059	0.0556	-0.6503
SL4.0ch01	82881479	snp	9	8	0.6528	0.5278	0.6667	0.0	-0.6667
SL4.0ch01	82894510	snp	19	25	0.5221	0.3916	0.6842	0.16	-0.5242
SL4.0ch01	82912360	snp	21	17	0.5266	0.409	0.6667	0.1176	-0.549
SL4.0ch01	82916808	snp	9	20	0.5889	0.4778	0.6667	0.05	-0.6167
SL4.0ch01	82925509	snp	31	24	0.4879	0.3723	0.6774	0.125	-0.5524
SL4.0ch01	82967594	snp	36	22	0.4874	0.3763	0.75	0.2273	-0.5227
SL4.0ch01	82967783	snp	25	17	0.5059	0.4047	0.64	0.1176	-0.5224
SL4.0ch01	83004946	indel	11	13	0.6014	0.4825	0.6364	0.0	-0.6364
SL4.0ch01	83004948	snp	11	14	0.6039	0.461	0.6364	0.0	-0.6364
SL4.0ch01	83011926	snp	30	24	0.475	0.3667	0.7333	0.2083	-0.525
SL4.0ch01	83012619	snp	12	15	0.6	0.4667	0.75	0.1333	-0.6167
SL4.0ch01	83020718	indel	26	25	0.4892	0.3738	0.6538	0.16	-0.4938
SL4.0ch01	83053206	indel	11	18	0.5758	0.4495	0.7273	0.0556	-0.6717
SL4.0ch01	83058220	snp	14	19	0.5414	0.4173	0.8571	0.3158	-0.5414
SL4.0ch01	83075064	snp	15	18	0.5333	0.4222	0.6	0.0556	-0.5444
SL4.0ch01	83090454	indel	16	19	0.5395	0.4145	0.625	0.0526	-0.5724
SL4.0ch01	83095459	indel	26	27	0.4772	0.3647	0.7692	0.2593	-0.51
SL4.0ch01	83102282	snp	17	21	0.5266	0.409	0.8235	0.2381	-0.5854
SL4.0ch01	83123599	indel	20	30	0.4833	0.3833	0.75	0.2333	-0.5167
SL4.0ch01	83123606	indel	22	30	0.4848	0.3818	0.7273	0.2333	-0.4939
SL4.0ch01	83127518	indel	38	18	0.4854	0.3801	0.5789	0.0	-0.5789
SL4.0ch01	83184345	snp	17	17	0.5294	0.4118	0.6471	0.1176	-0.5294
SL4.0ch01	83186942	indel	25	18	0.5133	0.4022	0.6	0.0556	-0.5444
SL4.0ch01	83199475	snp	28	28	0.4643	0.3571	0.6786	0.1071	-0.5714
SL4.0ch01	83206543	snp	21	20	0.5143	0.4143	0.7143	0.2	-0.5143
SL4.0ch01	83216718	snp	36	32	0.441	0.3472	0.7222	0.25	-0.4722
SL4.0ch01	83236833	snp	20	36	0.4944	0.3833	0.75	0.1667	-0.5833
SL4.0ch01	83243322	snp	11	19	0.5694	0.4498	0.9091	0.2632	-0.6459
SL4.0ch01	83263551	snp	20	20	0.5	0.4	0.75	0.2	-0.55
SL4.0ch01	83267225	snp	29	22	0.4859	0.3715	0.7586	0.2727	-0.4859
SL4.0ch01	83267773	snp	15	23	0.5391	0.4261	0.6	0.0435	-0.5565
SL4.0ch01	83282312	indel	11	18	0.5758	0.4495	0.7273	0.1111	-0.6162
SL4.0ch01	83282877	snp	23	12	0.5652	0.442	0.7826	0.1667	-0.6159
SL4.0ch01	83286795	snp	25	24	0.5083	0.3867	0.6	0.0833	-0.5167
SL4.0ch01	83315558	snp	21	24	0.506	0.381	0.619	0.0	-0.619
SL4.0ch01	83331272	indel	16	16	0.5625	0.4375	0.6875	0.125	-0.5625
SL4.0ch01	83354757	snp	20	31	0.5032	0.3774	0.6	0.0968	-0.5032
SL4.0ch01	83370484	snp	22	23	0.5119	0.3794	0.7273	0.1304	-0.5968
SL4.0ch01	83370541	indel	23	22	0.5119	0.3794	0.6522	0.0455	-0.6067
SL4.0ch01	83380086	snp	15	22	0.5697	0.4152	0.8	0.1364	-0.6636
SL4.0ch01	83380185	indel	14	16	0.5536	0.4554	0.8571	0.1875	-0.6696
SL4.0ch01	83380188	snp	13	15	0.5692	0.4462	0.8462	0.2	-0.6462
SL4.0ch01	83390257	indel	16	20	0.525	0.4125	0.8125	0.2	-0.6125
SL4.0ch01	83390269	indel	16	17	0.5699	0.4485	0.8125	0.0588	-0.7537
SL4.0ch01	83390277	snp	16	18	0.5347	0.4167	0.8125	0.1111	-0.7014
SL4.0ch01	83399816	snp	21	25	0.4895	0.3867	0.7619	0.16	-0.6019
SL4.0ch01	83404954	snp	16	20	0.525	0.4125	0.625	0.1	-0.525
SL4.0ch01	83411075	indel	20	23	0.4891	0.3957	0.8	0.2174	-0.5826
SL4.0ch01	83419105	indel	21	20	0.5143	0.4143	0.619	0.1	-0.519
SL4.0ch01	83439095	snp	14	15	0.5857	0.4476	0.8571	0.1333	-0.7238
SL4.0ch01	83450627	snp	26	23	0.5033	0.3829	0.6538	0.1304	-0.5234
SL4.0ch01	83475000	snp	24	28	0.4881	0.369	0.7083	0.1786	-0.5298
SL4.0ch01	83479014	snp	8	15	0.6167	0.4833	0.75	0.0667	-0.6833
SL4.0ch01	83507122	snp	21	26	0.5037	0.3883	0.7143	0.1154	-0.5989
SL4.0ch01	83512936	snp	15	17	0.5647	0.4392	0.8	0.1176	-0.6824
SL4.0ch01	83524403	snp	13	11	0.6014	0.4825	0.6923	0.0	-0.6923
SL4.0ch01	83528362	snp	18	30	0.5	0.3889	0.7222	0.2	-0.5222
SL4.0ch01	83533400	snp	22	19	0.5167	0.4043	0.6818	0.1053	-0.5766
SL4.0ch01	83603430	snp	15	20	0.55	0.4167	0.7333	0.1	-0.6333
SL4.0ch01	83634674	snp	17	24	0.5221	0.4069	0.7647	0.2083	-0.5564
SL4.0ch01	83637771	snp	14	24	0.5536	0.4226	0.8571	0.2917	-0.5655
SL4.0ch01	83664043	snp	9	18	0.6111	0.4444	0.7778	0.1667	-0.6111
SL4.0ch01	83675011	indel	22	26	0.5035	0.3881	0.6818	0.1154	-0.5664
SL4.0ch01	83678386	snp	19	21	0.5363	0.4035	0.7895	0.1905	-0.599
SL4.0ch01	83678552	indel	23	16	0.5326	0.4076	0.6957	0.0625	-0.6332
SL4.0ch01	83686465	indel	19	15	0.5509	0.4316	0.6316	0.0667	-0.5649
SL4.0ch01	83698770	snp	25	26	0.4892	0.3738	0.64	0.0769	-0.5631
SL4.0ch01	83736355	indel	26	22	0.5035	0.3881	0.8077	0.1818	-0.6259
SL4.0ch01	83736497	indel	18	14	0.5635	0.4365	0.7778	0.0714	-0.7063
SL4.0ch01	83743799	indel	15	17	0.5647	0.4392	0.8	0.1765	-0.6235
SL4.0ch01	83754830	snp	16	17	0.5699	0.4485	0.75	0.1765	-0.5735
SL4.0ch01	83754918	snp	11	21	0.5758	0.4416	0.7273	0.0952	-0.632
SL4.0ch01	83808999	snp	31	23	0.4909	0.3829	0.6452	0.087	-0.5582
SL4.0ch01	83859463	indel	17	17	0.5294	0.4118	0.7059	0.1765	-0.5294
SL4.0ch01	83891382	snp	19	18	0.5585	0.4094	0.6842	0.1111	-0.5731
SL4.0ch01	83893052	snp	20	18	0.5222	0.4167	0.7	0.1667	-0.5333
SL4.0ch01	84009397	snp	28	21	0.5	0.381	0.6071	0.0952	-0.5119
SL4.0ch01	84324929	indel	19	28	0.5226	0.3966	0.8421	0.1786	-0.6635
SL4.0ch01	84403707	snp	21	23	0.5052	0.4017	0.5714	0.0435	-0.528
SL4.0ch01	84403727	indel	24	24	0.5	0.375	0.625	0.0833	-0.5417
SL4.0ch01	84422385	snp	15	28	0.519	0.4071	0.8	0.25	-0.55
SL4.0ch01	84431198	snp	18	23	0.529	0.4058	0.8889	0.2609	-0.628
SL4.0ch01	84592689	indel	9	13	0.6581	0.5043	0.7778	0.0769	-0.7009
SL4.0ch01	84609432	indel	14	16	0.5536	0.4554	0.7143	0.125	-0.5893
SL4.0ch01	84682787	snp	9	11	0.6869	0.5051	0.8889	0.1818	-0.7071
SL4.0ch01	84682816	indel	12	16	0.5625	0.4375	0.9167	0.125	-0.7917
SL4.0ch01	84757907	snp	16	14	0.5536	0.4554	0.75	0.1429	-0.6071
SL4.0ch01	84775038	snp	18	21	0.5159	0.3968	0.6111	0.0476	-0.5635
SL4.0ch01	84798835	snp	16	14	0.5536	0.4554	0.75	0.1429	-0.6071
SL4.0ch01	84832131	snp	27	33	0.4747	0.3636	0.7778	0.303	-0.4747
SL4.0ch01	84834150	snp	24	21	0.506	0.381	0.625	0.0952	-0.5298
SL4.0ch01	84875006	snp	13	9	0.6581	0.5043	0.6923	0.0	-0.6923
SL4.0ch01	84994310	snp	8	8	0.75	0.5	0.0	0.75	0.75
SL4.0ch01	84997271	snp	27	26	0.4772	0.3647	0.5926	0.0769	-0.5157
SL4.0ch01	85033094	snp	11	18	0.5758	0.4495	0.6364	0.0556	-0.5808
SL4.0ch01	85086736	indel	20	28	0.5071	0.3857	0.7	0.1071	-0.5929
SL4.0ch01	85208736	snp	13	11	0.6014	0.4825	0.8462	0.1818	-0.6643
SL4.0ch01	85212646	snp	16	18	0.5347	0.4167	0.8125	0.2778	-0.5347
SL4.0ch01	85243884	indel	27	20	0.5037	0.4019	0.7778	0.15	-0.6278
SL4.0ch01	85245000	indel	13	15	0.5692	0.4462	0.7692	0.2	-0.5692
SL4.0ch01	85259192	snp	23	17	0.5192	0.4015	0.7391	0.1176	-0.6215
SL4.0ch01	85299126	snp	23	21	0.5052	0.4017	0.7391	0.1905	-0.5487
SL4.0ch01	85301416	snp	23	30	0.4928	0.3725	0.7826	0.2667	-0.5159
SL4.0ch01	85301425	indel	26	31	0.4789	0.3759	0.8077	0.2903	-0.5174
SL4.0ch01	85321527	snp	13	19	0.5587	0.4291	0.7692	0.2105	-0.5587
SL4.0ch01	85391109	indel	26	21	0.5037	0.3883	0.6154	0.0952	-0.5201
SL4.0ch01	85415187	indel	24	18	0.5	0.4028	0.75	0.2222	-0.5278
SL4.0ch01	85474343	snp	19	27	0.5302	0.3879	0.7368	0.1852	-0.5517
SL4.0ch01	85509815	snp	27	24	0.4907	0.375	0.6296	0.125	-0.5046
SL4.0ch01	85535750	indel	23	27	0.4799	0.3816	0.8261	0.2963	-0.5298
SL4.0ch01	85577185	snp	20	25	0.51	0.4	0.6	0.08	-0.52
SL4.0ch01	85644614	snp	11	15	0.5939	0.4606	0.6364	0.0	-0.6364
SL4.0ch01	85738438	snp	24	17	0.5221	0.4069	0.7917	0.1176	-0.674
SL4.0ch01	85773958	indel	16	23	0.5326	0.4076	0.75	0.2174	-0.5326
SL4.0ch01	85774350	indel	23	18	0.529	0.4058	0.6522	0.1111	-0.5411
SL4.0ch01	85889574	indel	20	14	0.5571	0.4357	0.85	0.2143	-0.6357
SL4.0ch01	85957345	snp	13	8	0.6442	0.5192	0.9231	0.125	-0.7981
SL4.0ch01	86171588	snp	25	20	0.51	0.4	0.76	0.15	-0.61
SL4.0ch01	86172902	snp	23	22	0.5119	0.3794	0.6522	0.1364	-0.5158
SL4.0ch01	86210325	snp	14	19	0.5414	0.4173	0.7143	0.1579	-0.5564
SL4.0ch01	86225746	indel	23	22	0.5119	0.3794	0.6957	0.1818	-0.5138
SL4.0ch01	86225749	snp	20	26	0.4962	0.3808	0.65	0.1538	-0.4962
SL4.0ch01	86234730	indel	19	20	0.5342	0.3921	0.6842	0.1	-0.5842
SL4.0ch01	86346348	indel	16	28	0.5089	0.4018	0.75	0.2143	-0.5357
SL4.0ch01	86366469	snp	15	16	0.55	0.4208	0.8	0.1875	-0.6125
SL4.0ch01	86453245	snp	16	23	0.5326	0.4076	0.75	0.1739	-0.5761
SL4.0ch01	87031261	snp	12	10	0.6333	0.4833	0.0	0.7	0.7
SL4.0ch01	87226662	indel	13	18	0.547	0.4359	0.6923	0.1111	-0.5812
SL4.0ch01	87354178	indel	16	24	0.5417	0.4167	0.8125	0.2083	-0.6042
SL4.0ch01	87373335	indel	14	27	0.5291	0.418	0.8571	0.2222	-0.6349
SL4.0ch01	87403953	indel	15	23	0.5391	0.4261	0.0	0.6087	0.6087
SL4.0ch01	87425442	indel	16	11	0.5739	0.4489	0.6875	0.0909	-0.5966
SL4.0ch01	87447835	snp	10	16	0.5875	0.4625	1.0	0.3125	-0.6875
SL4.0ch01	87448064	snp	19	20	0.5342	0.3921	0.6842	0.15	-0.5342
SL4.0ch01	87528202	snp	20	17	0.5235	0.4059	0.7	0.1765	-0.5235
SL4.0ch01	87566588	indel	10	13	0.6154	0.4923	1.0	0.3077	-0.6923
SL4.0ch01	87566593	snp	10	13	0.6154	0.4923	1.0	0.3077	-0.6923
SL4.0ch01	87779092	snp	19	31	0.4992	0.382	0.8421	0.2581	-0.584
SL4.0ch01	88390269	snp	13	12	0.6026	0.4487	0.7692	0.1667	-0.6026
SL4.0ch01	88855013	snp	23	19	0.5011	0.389	0.6087	0.1053	-0.5034
SL4.0ch01	88916703	snp	10	11	0.6273	0.5182	0.9	0.2727	-0.6273
SL4.0ch01	89004250	snp	19	18	0.5585	0.4094	0.7895	0.1667	-0.6228
SL4.0ch01	89005434	snp	13	11	0.6014	0.4825	0.6923	0.0909	-0.6014
SL4.0ch01	89170307	indel	21	18	0.5159	0.3968	0.6667	0.1111	-0.5556
SL4.0ch01	89560054	indel	23	16	0.5326	0.4076	0.5652	0.0	-0.5652
SL4.0ch01	89580389	snp	8	11	0.6591	0.5114	0.75	0.0909	-0.6591
SL4.0ch01	89843921	snp	16	14	0.5536	0.4554	0.6875	0.0714	-0.6161
SL4.0ch01	90259802	indel	26	18	0.5128	0.3932	0.7308	0.1111	-0.6197
SL4.0ch01	90537377	snp	15	11	0.5939	0.4606	0.8667	0.1818	-0.6848
SL4.0ch01	90572395	snp	9	9	0.6667	0.5556	0.0	0.6667	0.6667
SL4.0ch01	90620871	snp	13	14	0.5604	0.4725	0.6923	0.0714	-0.6209
SL4.0ch01	90620882	indel	13	15	0.5692	0.4462	0.6923	0.0	-0.6923
SL4.0ch01	90753155	snp	10	10	0.6	0.5	0.2	0.8	0.6
SL4.0ch02	7353215	indel	17	24	0.5221	0.4069	0.8824	0.0833	-0.799
SL4.0ch02	7353222	indel	16	25	0.5325	0.4075	0.875	0.04	-0.835
SL4.0ch02	9393827	indel	16	23	0.5326	0.4076	0.0	0.8696	0.8696
SL4.0ch02	36904013	indel	18	10	0.5889	0.4556	0.9444	0.1	-0.8444
SL4.0ch02	52488200	indel	8	21	0.5893	0.4643	1.0	0.0476	-0.9524
SL4.0ch03	6733858	snp	21	19	0.5363	0.4035	0.1905	0.8421	0.6516
SL4.0ch03	19058179	snp	29	28	0.4741	0.3695	0.3103	0.8214	0.5111
SL4.0ch03	26683347	snp	18	8	0.5972	0.4722	0.0556	0.75	0.6944
SL4.0ch03	26777746	snp	29	28	0.4741	0.3695	0.3448	0.8571	0.5123
SL4.0ch03	34391339	snp	37	23	0.49	0.376	0.3243	0.8261	0.5018
SL4.0ch03	38406428	snp	28	41	0.4591	0.3519	0.3214	0.8049	0.4834
SL4.0ch03	41370559	snp	25	24	0.5083	0.3867	0.16	0.7917	0.6317
SL4.0ch03	41563786	snp	31	24	0.4879	0.3723	0.2581	0.875	0.6169
SL4.0ch04	758548	indel	13	19	0.5587	0.4291	0.0	1.0	1.0
SL4.0ch04	34225652	indel	14	20	0.5571	0.4357	1.0	0.1	-0.9
SL4.0ch04	42726549	indel	25	14	0.5371	0.4114	1.0	0.0	-1.0
SL4.0ch04	58314389	indel	17	13	0.5747	0.4389	0.0	0.9231	0.9231
SL4.0ch04	58481376	indel	15	19	0.5509	0.4316	1.0	0.0	-1.0
SL4.0ch04	58874439	snp	16	12	0.5625	0.4375	0.1875	0.75	0.5625
SL4.0ch05	1229111	indel	13	15	0.5692	0.4462	0.8462	0.0667	-0.7795
SL4.0ch05	4404918	indel	19	17	0.5201	0.4087	1.0	0.0588	-0.9412
SL4.0ch05	4856285	indel	16	24	0.5417	0.4167	1.0	0.0833	-0.9167
SL4.0ch05	5137976	indel	19	13	0.5587	0.4291	0.0526	1.0	0.9474
SL4.0ch05	38361477	indel	12	19	0.5921	0.443	0.75	0.1053	-0.6447
SL4.0ch05	48970961	indel	15	13	0.5692	0.4462	0.0667	1.0	0.9333
SL4.0ch05	52779844	indel	14	21	0.5476	0.4286	0.0714	1.0	0.9286
SL4.0ch05	60586481	indel	27	10	0.5667	0.4556	0.0741	1.0	0.9259
SL4.0ch06	18141356	indel	17	31	0.5009	0.3833	0.8235	0.0645	-0.759
SL4.0ch06	38248944	indel	13	21	0.5788	0.4359	0.0769	0.9048	0.8278
SL4.0ch06	42933187	indel	23	8	0.6141	0.4837	0.0435	1.0	0.9565
SL4.0ch07	3719777	indel	17	25	0.5059	0.4047	0.9412	0.04	-0.9012
SL4.0ch07	34432501	indel	9	8	0.6528	0.5278	0.0	0.875	0.875
SL4.0ch07	58350232	indel	14	20	0.5571	0.4357	0.0	0.95	0.95
SL4.0ch07	66699251	indel	33	16	0.5076	0.3883	0.2121	0.75	0.5379
SL4.0ch08	9460624	indel	15	15	0.6	0.4667	0.9333	0.2	-0.7333
SL4.0ch08	28113277	indel	12	16	0.5625	0.4375	0.8333	0.0	-0.8333
SL4.0ch08	52433542	indel	20	18	0.5222	0.4167	0.85	0.1111	-0.7389
SL4.0ch08	52930546	indel	21	14	0.5476	0.4286	0.0476	1.0	0.9524
SL4.0ch08	55627553	indel	28	19	0.5226	0.3966	0.0	0.9474	0.9474
SL4.0ch08	61591714	indel	18	16	0.5347	0.4167	0.0556	1.0	0.9444
SL4.0ch08	63557510	indel	16	10	0.5875	0.4625	0.125	1.0	0.875
SL4.0ch09	294421	indel	24	12	0.5417	0.4167	0.125	1.0	0.875
SL4.0ch09	515341	indel	19	17	0.5201	0.4087	1.0	0.1176	-0.8824
SL4.0ch09	11533844	snp	23	16	0.5326	0.4076	0.1739	0.75	0.5761
SL4.0ch09	30100883	indel	19	13	0.5587	0.4291	0.1053	0.9231	0.8178
SL4.0ch09	66841836	indel	11	10	0.6273	0.5182	0.0909	0.9	0.8091
SL4.0ch11	16472	snp	13	8	0.6442	0.5192	0.2308	0.875	0.6442
SL4.0ch11	28099	snp	8	17	0.6397	0.4706	0.0	0.7059	0.7059
SL4.0ch11	76837	indel	22	34	0.4786	0.361	0.3636	0.8529	0.4893
SL4.0ch11	112581	indel	20	20	0.5	0.4	0.2	0.7	0.5
SL4.0ch11	180715	snp	27	11	0.5589	0.431	0.2593	0.9091	0.6498
SL4.0ch11	191496	snp	16	20	0.525	0.4125	0.25	0.8	0.55
SL4.0ch11	295910	indel	10	21	0.5667	0.4619	0.1	0.6667	0.5667
SL4.0ch11	372028	snp	18	9	0.6111	0.4444	0.0556	0.7778	0.7222
SL4.0ch11	377202	snp	12	23	0.5652	0.442	0.25	0.8261	0.5761
SL4.0ch11	425981	snp	11	11	0.6364	0.4545	0.1818	0.8182	0.6364
SL4.0ch11	493867	indel	22	23	0.5119	0.3794	0.0909	0.6087	0.5178
SL4.0ch11	493970	snp	20	18	0.5222	0.4167	0.1	0.7222	0.6222
SL4.0ch11	533515	snp	20	28	0.5071	0.3857	0.2	0.75	0.55
SL4.0ch11	630430	indel	13	18	0.547	0.4359	0.1538	0.7222	0.5684
SL4.0ch11	636695	snp	9	10	0.6778	0.4889	0.1111	0.9	0.7889
SL4.0ch11	661185	snp	21	26	0.5037	0.3883	0.2381	0.7692	0.5311
SL4.0ch11	681187	snp	15	18	0.5333	0.4222	0.2667	0.8333	0.5667
SL4.0ch11	738914	snp	16	23	0.5326	0.4076	0.1875	0.7826	0.5951
SL4.0ch11	776923	indel	31	15	0.514	0.4086	0.1613	0.7333	0.572
SL4.0ch11	776942	snp	26	16	0.5337	0.4087	0.1154	0.75	0.6346
SL4.0ch11	780034	snp	17	12	0.5735	0.4314	0.1176	0.75	0.6324
SL4.0ch11	788796	snp	24	26	0.4872	0.391	0.3333	0.8462	0.5128
SL4.0ch11	822716	snp	17	17	0.5294	0.4118	0.2941	0.8824	0.5882
SL4.0ch11	841601	indel	21	19	0.5363	0.4035	0.1429	0.7368	0.594
SL4.0ch11	841625	snp	21	21	0.5238	0.381	0.1429	0.6667	0.5238
SL4.0ch11	853182	snp	17	16	0.5699	0.4485	0.2353	0.8125	0.5772
SL4.0ch11	984232	indel	21	22	0.4913	0.3939	0.0952	0.5909	0.4957
SL4.0ch11	1020298	indel	19	21	0.5363	0.4035	0.1053	0.6667	0.5614
SL4.0ch11	1040617	indel	19	10	0.5895	0.4737	0.1579	0.9	0.7421
SL4.0ch11	1053015	indel	9	11	0.6869	0.5051	0.0	0.8182	0.8182
SL4.0ch11	1053018	indel	11	9	0.6869	0.5051	0.0909	0.7778	0.6869
SL4.0ch11	1096355	indel	13	18	0.547	0.4359	0.1538	0.7778	0.6239
SL4.0ch11	1096390	snp	11	17	0.5829	0.4599	0.1818	0.7647	0.5829
SL4.0ch11	1126256	snp	13	18	0.547	0.4359	0.0769	0.7222	0.6453
SL4.0ch11	1152738	snp	12	24	0.5417	0.4167	0.1667	0.7083	0.5417
SL4.0ch11	1164504	snp	24	28	0.4881	0.369	0.2917	0.7857	0.494
SL4.0ch11	1184797	indel	14	8	0.6429	0.4821	0.1429	0.875	0.7321
SL4.0ch11	1229964	snp	20	20	0.5	0.4	0.25	0.75	0.5
SL4.0ch11	5281103	snp	12	22	0.5606	0.4318	0.0833	0.6818	0.5985
SL4.0ch11	7810289	indel	19	17	0.5201	0.4087	0.0	0.8824	0.8824
SL4.0ch11	16522146	indel	15	22	0.5697	0.4152	1.0	0.1818	-0.8182
SL4.0ch12	6425180	indel	15	19	0.5509	0.4316	0.0	0.8947	0.8947
SL4.0ch12	12686909	indel	22	17	0.5241	0.4011	0.1818	0.8235	0.6417
SL4.0ch12	13616147	indel	21	17	0.5266	0.409	0.1429	0.9412	0.7983
SL4.0ch12	34931662	indel	10	15	0.6	0.4667	0.9	0.0	-0.9
SL4.0ch12	50920452	indel	23	15	0.5391	0.4261	0.087	0.8	0.713
SL4.0ch12	54668304	indel	11	20	0.5682	0.4455	0.0	1.0	1.0