Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
HR.1	24,107,316	722,944 (3.0%)	902,921 (3.7%)	0 (0.0%)	0 (0.0%)	24,107,316 (100.0%)
HR.2	24,142,711	719,716 (3.0%)	901,730 (3.7%)	0 (0.0%)	0 (0.0%)	24,142,711 (100.0%)
HR.3	24,163,957	722,291 (3.0%)	898,711 (3.7%)	0 (0.0%)	0 (0.0%)	24,163,957 (100.0%)
HS.1	24,210,809	711,370 (2.9%)	844,908 (3.5%)	0 (0.0%)	0 (0.0%)	24,210,809 (100.0%)
HS.2	24,226,151	708,577 (2.9%)	860,239 (3.6%)	0 (0.0%)	0 (0.0%)	24,226,151 (100.0%)
HS.3	24,039,082	700,843 (2.9%)	831,461 (3.5%)	1 (0.0%)	0 (0.0%)	24,039,081 (100.0%)
LR.1	23,061,425	678,828 (2.9%)	852,541 (3.7%)	0 (0.0%)	0 (0.0%)	23,061,425 (100.0%)
LR.2	22,823,297	666,009 (2.9%)	847,101 (3.7%)	0 (0.0%)	0 (0.0%)	22,823,297 (100.0%)
LR.3	24,072,751	723,484 (3.0%)	891,887 (3.7%)	0 (0.0%)	0 (0.0%)	24,072,751 (100.0%)
LS.1	22,924,564	678,113 (3.0%)	811,263 (3.5%)	2 (0.0%)	0 (0.0%)	22,924,562 (100.0%)
LS.2	24,355,445	716,818 (2.9%)	862,888 (3.5%)	1 (0.0%)	0 (0.0%)	24,355,444 (100.0%)
LS.3	24,096,916	702,271 (2.9%)	842,603 (3.5%)	0 (0.0%)	0 (0.0%)	24,096,916 (100.0%)
TR.1	24,156,901	725,207 (3.0%)	894,913 (3.7%)	0 (0.0%)	0 (0.0%)	24,156,901 (100.0%)
TR.2	23,899,549	715,325 (3.0%)	885,709 (3.7%)	0 (0.0%)	0 (0.0%)	23,899,549 (100.0%)
TR.3	24,152,507	722,790 (3.0%)	899,455 (3.7%)	1 (0.0%)	0 (0.0%)	24,152,506 (100.0%)
TS.1	24,160,305	721,026 (3.0%)	852,086 (3.5%)	0 (0.0%)	0 (0.0%)	24,160,305 (100.0%)
TS.2	24,209,449	715,145 (3.0%)	854,604 (3.5%)	0 (0.0%)	0 (0.0%)	24,209,449 (100.0%)
TS.3	24,144,818	713,640 (3.0%)	856,961 (3.5%)	0 (0.0%)	0 (0.0%)	24,144,818 (100.0%)