FastQCFastQC Report
Wed 9 Apr 2025
Col0.dry.SD.3.R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCol0.dry.SD.3.R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8880300
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTCTCAACGGTAGCCTCAACACCAACGTCTCCTTTATTGAGACTAT107120.1206265554091641No Hit
CCGCAAACTCCGGACCATGTCCCACTTGGCCTCTCGCACAACTTCTGTGC96610.10879136966093488No Hit
CACACTTTATAATTAAGCATTAAGAGCTCTTGGTAGATTAACATGGGAAG93870.10570588831458397No Hit
CTCCGGACCATGTCCCACTTGGCCTCTCGCACAACTTCTGTGCTTCCACC92560.10423071292636509No Hit
GTCCCACTTGGCCTCTCGCACAACTTCTGTGCTTCCACCACCATCGGTGC90210.10158440593223202No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)