Sample	Total read pairs processed	Read 1 with adapter	Read 2 with adapter	Pairs that were too short	Pairs with too many N	Pairs written (passing filters)
Col0.dry.SD.1	7,458,409	2,166,329 (29.0%)	2,007,357 (26.9%)	27,501 (0.4%)	669 (0.0%)	7,430,239 (99.6%)
Col0.dry.SD.2	7,870,983	2,052,969 (26.1%)	1,938,258 (24.6%)	41,167 (0.5%)	617 (0.0%)	7,829,199 (99.5%)
Col0.dry.SD.3	8,880,300	2,426,126 (27.3%)	2,447,714 (27.6%)	29,859 (0.3%)	226 (0.0%)	8,850,215 (99.7%)
mA.1	7,601,916	1,703,012 (22.4%)	1,653,064 (21.7%)	40,895 (0.5%)	607 (0.0%)	7,560,414 (99.5%)
mA.2	11,434,445	3,058,740 (26.8%)	3,032,690 (26.5%)	45,388 (0.4%)	739 (0.0%)	11,388,318 (99.6%)
mA.3	11,162,785	3,053,643 (27.4%)	3,104,847 (27.8%)	42,782 (0.4%)	299 (0.0%)	11,119,704 (99.6%)
mB.1	6,724,209	1,338,148 (19.9%)	1,295,848 (19.3%)	32,651 (0.5%)	499 (0.0%)	6,691,059 (99.5%)
mB.2	6,832,604	2,040,480 (29.9%)	1,921,615 (28.1%)	42,903 (0.6%)	491 (0.0%)	6,789,210 (99.4%)
mB.3	7,726,536	1,616,493 (20.9%)	1,549,472 (20.1%)	26,026 (0.3%)	601 (0.0%)	7,699,909 (99.7%)
tfl1.20.dry.SD.1	7,612,293	1,957,384 (25.7%)	1,858,687 (24.4%)	25,512 (0.3%)	629 (0.0%)	7,586,152 (99.7%)
tfl1.20.dry.SD.2	8,770,090	2,473,018 (28.2%)	2,499,526 (28.5%)	28,019 (0.3%)	241 (0.0%)	8,741,830 (99.7%)
tfl1.20.dry.SD.3	10,888,386	2,491,769 (22.9%)	2,534,560 (23.3%)	25,288 (0.2%)	274 (0.0%)	10,862,824 (99.8%)