FastQCFastQC Report
Wed 9 Apr 2025
Col0.dry.SD.3.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCol0.dry.SD.3.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8850215
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTCTCAACGGTAGCCTCAACACCAACGTCTCCTTTATTGAGACTAT106570.1204151537561517No Hit
CCGCAAACTCCGGACCATGTCCCACTTGGCCTCTCGCACAACTTCTGTGC96360.10887871085617692No Hit
CACACTTTATAATTAAGCATTAAGAGCTCTTGGTAGATTAACATGGGAAG93510.10565845010544941No Hit
CTCCGGACCATGTCCCACTTGGCCTCTCGCACAACTTCTGTGCTTCCACC92310.1043025508419852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)