FastQCFastQC Report
Wed 9 Apr 2025
Col0.dry.SD.3.R2.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCol0.dry.SD.3.R2.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8850215
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAAAACAACTAAGTATAAACAATAGTCATGGCTAAGTCTGCTACCATCG238290.2692476962424077No Hit
ATCGAAAACAACTAAGTATAAACAATAGTCATGGCTAAGTCTGCTACCAT218330.24669457182678614No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG176300.1992042001239518No Hit
TATACATCGAAAACAACTAAGTATAAACAATAGTCATGGCTAAGTCTGCT130410.1473523524569742No Hit
TCGAAAACAACTAAGTATAAACAATAGTCATGGCTAAGTCTGCTACCATC126610.14305867145600418No Hit
CTCGCCAAAAACCTTGAAACCTTTAAAAAATCGAAACTATGGCTAAGCTC106320.12013267474292999No Hit
TGTAAACTCAATTGCATGGTAGTAAAAATGAATACGAAAACGTTTATTGT90190.10190712880986508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)