FastQCFastQC Report
Wed 9 Apr 2025
mA.3.R1.clean.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenamemA.3.R1.clean.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11119704
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length20-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATTATTTTTATTTAATATGTATACACGATTGTTCGAAGCTTAACGGC151190.13596584945066884No Hit
GTCCTCTTCATGGTCCTAGTAAGGAGATGCCTTGAACTGGCAGGATCCAA141940.1276472826974531No Hit
GTCCCACTTGGCCTCTCGCACAACTTCTGTGCTTCCACCACCATCGGTGC133840.12036291613517769No Hit
CACACTTTATAATTAAGCATTAAGAGCTCTTGGTAGATTAACATGGGAAG131390.11815962007621786No Hit
GTTGTGATTGCTGAAACTCCTTCTGGCATCTCTGTCTTGGACCTACGGGG117810.10594706477798328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)